Ggra7114.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7114.t1
Unique Name	Ggra7114.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	534

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000062_pilon	contig	tig00000062_pilon:556740..558341 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7114	Ggra7114	Gracilaria gracilis GNS1m male	gene	tig00000062_pilon 556740..558341 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7114.t1.start1	Ggra7114.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000062_pilon 556740..556742 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7114.t1.CDS1	Ggra7114.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000062_pilon 556740..558341 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7114.t1.exon1	Ggra7114.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000062_pilon 556740..558341 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7114.t1.stop1	Ggra7114.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000062_pilon 558339..558341 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7114.t1	Ggra7114.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000062_pilon 556740..558341 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000062_pilon:556740..558341+
coding sequence from alignment at tig00000062_pilon:556740..558341+

mRNA sequence

>Ggra7114.t1 ID=Ggra7114.t1|Name=Ggra7114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp
MTKSVPRRRSTRTRRSPPQWWKEGSNRPKSKPSSVAKIERSSLSEEEERP
RKRRPPRLPENAQPQKSRCQETFQSDWNGVEEDGEGEVSHQVIGDTCSTV
IFHSTETYKSHGKPQSDFLKSSEHPVPDEKITNTGETLKSDIEQVTNTFE
STAYHVQFTSTTEVETAAQTDKIHDEARLVSGNINTQKDVELTRTRMEKT
CSFQVSSGLQRGGRGETIFNTFIQDGMCSSSPPRASGSNASKDAMKAVGE
KKTGAIGKRLDSKDCLEACPEGRSTPPKASVNQNLSPQEIGARVVARISE
RLLYGETLNNENCRSPTRQSKPLSNNTSFTSAKDVRKGTDNSSVQSSRII
NAINGVAVRQSTEHTSLHGSERYFGVEEMMPAVSQEFRMPETCSTCSPQA
CICENKRFAKKRAKETTPSAIGFKLRRGSKIHYTTESGVFGLIKFGIRAC
SDGILVGELTIFPRSATGPRRTSGQKELYIVLRGFLILEVEDSTLHLREG
DDVEFEDNTVFQFRNPHLRSTDLICLLLPTEYA*

spliced messenger RNA

>Ggra7114.t1 ID=Ggra7114.t1|Name=Ggra7114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00000062_pilon:556740..558341+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAAAGTGTTCCCAGACGTAGGTCGACCAGGACGCGAAGAAGTCC
CCCACAGTGGTGGAAAGAAGGCTCGAATCGACCTAAATCTAAGCCCTCAA
GCGTTGCCAAGATTGAACGGTCCTCACTCTCGGAAGAAGAAGAAAGGCCT
AGGAAGAGGCGGCCTCCGAGACTTCCAGAGAACGCTCAGCCTCAAAAATC
AAGATGCCAAGAGACCTTCCAATCGGATTGGAACGGCGTTGAAGAAGACG
GGGAAGGCGAAGTCAGCCACCAAGTAATTGGTGATACTTGTTCAACAGTG
ATTTTCCACTCCACTGAAACGTACAAAAGTCATGGGAAACCGCAGTCTGA
CTTCCTAAAATCAAGCGAGCATCCCGTCCCTGACGAAAAGATCACCAATA
CTGGCGAAACCCTCAAGTCCGATATAGAACAGGTTACTAATACCTTCGAA
TCGACGGCGTATCATGTGCAGTTCACCTCAACAACAGAGGTAGAAACAGC
GGCTCAAACTGACAAAATTCACGATGAAGCAAGGCTTGTCTCGGGAAACA
TCAACACACAGAAGGATGTGGAACTAACTCGTACAAGGATGGAAAAGACA
TGTTCTTTCCAGGTTTCTTCTGGGCTGCAGAGAGGTGGCCGTGGCGAAAC
CATTTTCAATACTTTTATCCAGGATGGGATGTGCAGCTCTTCTCCGCCAA
GAGCAAGTGGTTCTAACGCAAGCAAAGACGCAATGAAAGCGGTGGGTGAA
AAGAAGACAGGCGCTATTGGGAAACGACTAGATTCCAAAGACTGCTTGGA
AGCATGTCCAGAAGGAAGATCAACACCTCCTAAAGCCAGTGTTAATCAGA
ACCTCTCTCCTCAAGAAATCGGAGCTCGGGTGGTAGCTCGGATTTCTGAA
CGACTTTTATACGGCGAAACGTTGAACAACGAAAACTGTCGAAGCCCAAC
CAGGCAATCGAAACCACTCTCGAACAATACAAGCTTTACATCAGCGAAAG
ATGTGAGAAAAGGGACCGATAACTCTTCAGTACAGTCTTCGAGGATAATC
AACGCCATCAACGGCGTAGCTGTGCGTCAATCTACGGAGCATACGAGCTT
GCATGGTTCAGAACGATACTTCGGGGTTGAAGAAATGATGCCTGCCGTTT
CTCAAGAGTTTCGAATGCCAGAAACCTGTTCCACTTGCTCTCCACAAGCA
TGCATCTGTGAGAACAAGCGTTTCGCTAAAAAACGAGCGAAGGAAACCAC
ACCATCTGCAATAGGCTTTAAACTACGGCGCGGGTCAAAGATTCATTACA
CCACTGAGAGCGGGGTCTTTGGGCTTATAAAGTTCGGAATCAGAGCATGC
AGCGACGGAATTCTGGTAGGAGAACTTACTATTTTCCCTCGGTCTGCAAC
AGGTCCTCGACGCACAAGCGGACAAAAAGAATTGTATATAGTTCTACGAG
GATTCCTCATCCTCGAAGTAGAGGATTCTACACTCCATCTGCGTGAAGGA
GACGACGTCGAATTCGAAGATAACACGGTGTTTCAGTTTAGAAACCCACA
CCTTCGTTCCACTGACTTAATCTGCCTTCTGTTGCCCACTGAGTACGCGT
AG

protein sequence of Ggra7114.t1

>Ggra7114.t1 ID=Ggra7114.t1|Name=Ggra7114.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=534bp
MTKSVPRRRSTRTRRSPPQWWKEGSNRPKSKPSSVAKIERSSLSEEEERP
RKRRPPRLPENAQPQKSRCQETFQSDWNGVEEDGEGEVSHQVIGDTCSTV
IFHSTETYKSHGKPQSDFLKSSEHPVPDEKITNTGETLKSDIEQVTNTFE
STAYHVQFTSTTEVETAAQTDKIHDEARLVSGNINTQKDVELTRTRMEKT
CSFQVSSGLQRGGRGETIFNTFIQDGMCSSSPPRASGSNASKDAMKAVGE
KKTGAIGKRLDSKDCLEACPEGRSTPPKASVNQNLSPQEIGARVVARISE
RLLYGETLNNENCRSPTRQSKPLSNNTSFTSAKDVRKGTDNSSVQSSRII
NAINGVAVRQSTEHTSLHGSERYFGVEEMMPAVSQEFRMPETCSTCSPQA
CICENKRFAKKRAKETTPSAIGFKLRRGSKIHYTTESGVFGLIKFGIRAC
SDGILVGELTIFPRSATGPRRTSGQKELYIVLRGFLILEVEDSTLHLREG
DDVEFEDNTVFQFRNPHLRSTDLICLLLPTEYA*

mRNA from alignment at tig00000062_pilon:556740..558341+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7114.t1 ID=Ggra7114.t1|Name=Ggra7114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00000062_pilon:556740..558341+ (Gracilaria gracilis GNS1m male)
ATGACAAAAAGTGTTCCCAGACGTAGGTCGACCAGGACGCGAAGAAGTCC
CCCACAGTGGTGGAAAGAAGGCTCGAATCGACCTAAATCTAAGCCCTCAA
GCGTTGCCAAGATTGAACGGTCCTCACTCTCGGAAGAAGAAGAAAGGCCT
AGGAAGAGGCGGCCTCCGAGACTTCCAGAGAACGCTCAGCCTCAAAAATC
AAGATGCCAAGAGACCTTCCAATCGGATTGGAACGGCGTTGAAGAAGACG
GGGAAGGCGAAGTCAGCCACCAAGTAATTGGTGATACTTGTTCAACAGTG
ATTTTCCACTCCACTGAAACGTACAAAAGTCATGGGAAACCGCAGTCTGA
CTTCCTAAAATCAAGCGAGCATCCCGTCCCTGACGAAAAGATCACCAATA
CTGGCGAAACCCTCAAGTCCGATATAGAACAGGTTACTAATACCTTCGAA
TCGACGGCGTATCATGTGCAGTTCACCTCAACAACAGAGGTAGAAACAGC
GGCTCAAACTGACAAAATTCACGATGAAGCAAGGCTTGTCTCGGGAAACA
TCAACACACAGAAGGATGTGGAACTAACTCGTACAAGGATGGAAAAGACA
TGTTCTTTCCAGGTTTCTTCTGGGCTGCAGAGAGGTGGCCGTGGCGAAAC
CATTTTCAATACTTTTATCCAGGATGGGATGTGCAGCTCTTCTCCGCCAA
GAGCAAGTGGTTCTAACGCAAGCAAAGACGCAATGAAAGCGGTGGGTGAA
AAGAAGACAGGCGCTATTGGGAAACGACTAGATTCCAAAGACTGCTTGGA
AGCATGTCCAGAAGGAAGATCAACACCTCCTAAAGCCAGTGTTAATCAGA
ACCTCTCTCCTCAAGAAATCGGAGCTCGGGTGGTAGCTCGGATTTCTGAA
CGACTTTTATACGGCGAAACGTTGAACAACGAAAACTGTCGAAGCCCAAC
CAGGCAATCGAAACCACTCTCGAACAATACAAGCTTTACATCAGCGAAAG
ATGTGAGAAAAGGGACCGATAACTCTTCAGTACAGTCTTCGAGGATAATC
AACGCCATCAACGGCGTAGCTGTGCGTCAATCTACGGAGCATACGAGCTT
GCATGGTTCAGAACGATACTTCGGGGTTGAAGAAATGATGCCTGCCGTTT
CTCAAGAGTTTCGAATGCCAGAAACCTGTTCCACTTGCTCTCCACAAGCA
TGCATCTGTGAGAACAAGCGTTTCGCTAAAAAACGAGCGAAGGAAACCAC
ACCATCTGCAATAGGCTTTAAACTACGGCGCGGGTCAAAGATTCATTACA
CCACTGAGAGCGGGGTCTTTGGGCTTATAAAGTTCGGAATCAGAGCATGC
AGCGACGGAATTCTGGTAGGAGAACTTACTATTTTCCCTCGGTCTGCAAC
AGGTCCTCGACGCACAAGCGGACAAAAAGAATTGTATATAGTTCTACGAG
GATTCCTCATCCTCGAAGTAGAGGATTCTACACTCCATCTGCGTGAAGGA
GACGACGTCGAATTCGAAGATAACACGGTGTTTCAGTTTAGAAACCCACA
CCTTCGTTCCACTGACTTAATCTGCCTTCTGTTGCCCACTGAGTACGCGT
AG

Coding sequence (CDS) from alignment at tig00000062_pilon:556740..558341+

>Ggra7114.t1 ID=Ggra7114.t1|Name=Ggra7114.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1602bp|location=Sequence derived from alignment at tig00000062_pilon:556740..558341+ (Gracilaria gracilis GNS1m male)
ATGACAAAAAGTGTTCCCAGACGTAGGTCGACCAGGACGCGAAGAAGTCC
CCCACAGTGGTGGAAAGAAGGCTCGAATCGACCTAAATCTAAGCCCTCAA
GCGTTGCCAAGATTGAACGGTCCTCACTCTCGGAAGAAGAAGAAAGGCCT
AGGAAGAGGCGGCCTCCGAGACTTCCAGAGAACGCTCAGCCTCAAAAATC
AAGATGCCAAGAGACCTTCCAATCGGATTGGAACGGCGTTGAAGAAGACG
GGGAAGGCGAAGTCAGCCACCAAGTAATTGGTGATACTTGTTCAACAGTG
ATTTTCCACTCCACTGAAACGTACAAAAGTCATGGGAAACCGCAGTCTGA
CTTCCTAAAATCAAGCGAGCATCCCGTCCCTGACGAAAAGATCACCAATA
CTGGCGAAACCCTCAAGTCCGATATAGAACAGGTTACTAATACCTTCGAA
TCGACGGCGTATCATGTGCAGTTCACCTCAACAACAGAGGTAGAAACAGC
GGCTCAAACTGACAAAATTCACGATGAAGCAAGGCTTGTCTCGGGAAACA
TCAACACACAGAAGGATGTGGAACTAACTCGTACAAGGATGGAAAAGACA
TGTTCTTTCCAGGTTTCTTCTGGGCTGCAGAGAGGTGGCCGTGGCGAAAC
CATTTTCAATACTTTTATCCAGGATGGGATGTGCAGCTCTTCTCCGCCAA
GAGCAAGTGGTTCTAACGCAAGCAAAGACGCAATGAAAGCGGTGGGTGAA
AAGAAGACAGGCGCTATTGGGAAACGACTAGATTCCAAAGACTGCTTGGA
AGCATGTCCAGAAGGAAGATCAACACCTCCTAAAGCCAGTGTTAATCAGA
ACCTCTCTCCTCAAGAAATCGGAGCTCGGGTGGTAGCTCGGATTTCTGAA
CGACTTTTATACGGCGAAACGTTGAACAACGAAAACTGTCGAAGCCCAAC
CAGGCAATCGAAACCACTCTCGAACAATACAAGCTTTACATCAGCGAAAG
ATGTGAGAAAAGGGACCGATAACTCTTCAGTACAGTCTTCGAGGATAATC
AACGCCATCAACGGCGTAGCTGTGCGTCAATCTACGGAGCATACGAGCTT
GCATGGTTCAGAACGATACTTCGGGGTTGAAGAAATGATGCCTGCCGTTT
CTCAAGAGTTTCGAATGCCAGAAACCTGTTCCACTTGCTCTCCACAAGCA
TGCATCTGTGAGAACAAGCGTTTCGCTAAAAAACGAGCGAAGGAAACCAC
ACCATCTGCAATAGGCTTTAAACTACGGCGCGGGTCAAAGATTCATTACA
CCACTGAGAGCGGGGTCTTTGGGCTTATAAAGTTCGGAATCAGAGCATGC
AGCGACGGAATTCTGGTAGGAGAACTTACTATTTTCCCTCGGTCTGCAAC
AGGTCCTCGACGCACAAGCGGACAAAAAGAATTGTATATAGTTCTACGAG
GATTCCTCATCCTCGAAGTAGAGGATTCTACACTCCATCTGCGTGAAGGA
GACGACGTCGAATTCGAAGATAACACGGTGTTTCAGTTTAGAAACCCACA
CCTTCGTTCCACTGACTTAATCTGCCTTCTGTTGCCCACTGAGTACGCGT
AG