Ggra7006.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7006.t1
Unique NameGgra7006.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000211_piloncontigtig00000211_pilon:171955..172722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7006Ggra7006Gracilaria gracilis GNS1m malegenetig00000211_pilon 171955..172722 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7006.t1.stop1Ggra7006.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000211_pilon 171955..171957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7006.t1.CDS1Ggra7006.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000211_pilon 171955..172722 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7006.t1.exon1Ggra7006.t1.exon1Gracilaria gracilis GNS1m maleexontig00000211_pilon 171955..172722 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7006.t1.start1Ggra7006.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000211_pilon 172720..172722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7006.t1Ggra7006.t1Gracilaria gracilis GNS1m malepolypeptidetig00000211_pilon 171955..172722 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7006.t1 ID=Ggra7006.t1|Name=Ggra7006.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=256bp
MEAACDFSALHCPSVNPPAPSAEKTVITGWEIERIPVENNTHPCFSPSLG
HYTVPVDGLYQIIVEVIPLGGPAIAGEKNQRQVVPYAVCLQEPPSEQEDQ
ILRRFHDIGNKFAKVEHIKAGTKITCVRMPNVPGDECLRFKVEIVIRKRK
RVEKELTKKERKKRNKRQRRQVRSPRFLPARGRGEASRASEHDLAQFDTD
DASDSDSEWENGFESDSTSDELPSSRLAKRFKPSRPFDDLNRSEVFFDIN
DEVVS*
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spliced messenger RNA

>Ggra7006.t1 ID=Ggra7006.t1|Name=Ggra7006.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00000211_pilon:171955..172722- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCGGCTTGCGATTTCTCCGCGCTGCATTGCCCAAGCGTTAATCC
TCCCGCGCCGTCGGCCGAGAAGACTGTCATCACTGGATGGGAAATCGAGA
GGATTCCGGTCGAGAACAACACGCATCCTTGCTTCAGTCCTAGCCTGGGC
CATTACACCGTCCCGGTCGACGGGCTCTACCAGATAATCGTCGAGGTCAT
TCCCCTTGGCGGGCCCGCCATTGCTGGCGAGAAGAATCAGCGCCAAGTCG
TGCCTTACGCAGTCTGTTTGCAAGAGCCACCGAGCGAACAGGAGGATCAG
ATATTGCGGCGCTTCCACGACATTGGAAATAAGTTTGCCAAGGTAGAGCA
CATCAAAGCAGGCACCAAAATCACATGTGTGCGTATGCCAAATGTCCCGG
GTGATGAATGTCTGCGATTCAAGGTAGAGATCGTCATTCGCAAACGCAAG
AGAGTGGAAAAAGAGCTCACCAAGAAGGAACGCAAGAAAAGAAATAAGAG
GCAGAGGAGACAGGTGCGTTCGCCGCGCTTCTTACCGGCTCGTGGTCGTG
GCGAAGCTTCGCGCGCATCCGAACACGATCTCGCACAGTTTGATACCGAT
GACGCTTCTGACAGTGACAGCGAGTGGGAGAACGGATTCGAGAGTGATTC
CACTTCGGATGAACTCCCGTCCAGTCGCTTGGCCAAGCGCTTCAAACCGT
CTCGTCCTTTCGATGATCTCAACCGCAGTGAGGTCTTTTTCGATATCAAT
GATGAAGTAGTTTCTTAA
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protein sequence of Ggra7006.t1

>Ggra7006.t1 ID=Ggra7006.t1|Name=Ggra7006.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=256bp
MEAACDFSALHCPSVNPPAPSAEKTVITGWEIERIPVENNTHPCFSPSLG
HYTVPVDGLYQIIVEVIPLGGPAIAGEKNQRQVVPYAVCLQEPPSEQEDQ
ILRRFHDIGNKFAKVEHIKAGTKITCVRMPNVPGDECLRFKVEIVIRKRK
RVEKELTKKERKKRNKRQRRQVRSPRFLPARGRGEASRASEHDLAQFDTD
DASDSDSEWENGFESDSTSDELPSSRLAKRFKPSRPFDDLNRSEVFFDIN
DEVVS*
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mRNA from alignment at tig00000211_pilon:171955..172722-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7006.t1 ID=Ggra7006.t1|Name=Ggra7006.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00000211_pilon:171955..172722- (Gracilaria gracilis GNS1m male)
ATGGAAGCGGCTTGCGATTTCTCCGCGCTGCATTGCCCAAGCGTTAATCC
TCCCGCGCCGTCGGCCGAGAAGACTGTCATCACTGGATGGGAAATCGAGA
GGATTCCGGTCGAGAACAACACGCATCCTTGCTTCAGTCCTAGCCTGGGC
CATTACACCGTCCCGGTCGACGGGCTCTACCAGATAATCGTCGAGGTCAT
TCCCCTTGGCGGGCCCGCCATTGCTGGCGAGAAGAATCAGCGCCAAGTCG
TGCCTTACGCAGTCTGTTTGCAAGAGCCACCGAGCGAACAGGAGGATCAG
ATATTGCGGCGCTTCCACGACATTGGAAATAAGTTTGCCAAGGTAGAGCA
CATCAAAGCAGGCACCAAAATCACATGTGTGCGTATGCCAAATGTCCCGG
GTGATGAATGTCTGCGATTCAAGGTAGAGATCGTCATTCGCAAACGCAAG
AGAGTGGAAAAAGAGCTCACCAAGAAGGAACGCAAGAAAAGAAATAAGAG
GCAGAGGAGACAGGTGCGTTCGCCGCGCTTCTTACCGGCTCGTGGTCGTG
GCGAAGCTTCGCGCGCATCCGAACACGATCTCGCACAGTTTGATACCGAT
GACGCTTCTGACAGTGACAGCGAGTGGGAGAACGGATTCGAGAGTGATTC
CACTTCGGATGAACTCCCGTCCAGTCGCTTGGCCAAGCGCTTCAAACCGT
CTCGTCCTTTCGATGATCTCAACCGCAGTGAGGTCTTTTTCGATATCAAT
GATGAAGTAGTTTCTTAA
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Coding sequence (CDS) from alignment at tig00000211_pilon:171955..172722-

>Ggra7006.t1 ID=Ggra7006.t1|Name=Ggra7006.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=768bp|location=Sequence derived from alignment at tig00000211_pilon:171955..172722- (Gracilaria gracilis GNS1m male)
ATGGAAGCGGCTTGCGATTTCTCCGCGCTGCATTGCCCAAGCGTTAATCC
TCCCGCGCCGTCGGCCGAGAAGACTGTCATCACTGGATGGGAAATCGAGA
GGATTCCGGTCGAGAACAACACGCATCCTTGCTTCAGTCCTAGCCTGGGC
CATTACACCGTCCCGGTCGACGGGCTCTACCAGATAATCGTCGAGGTCAT
TCCCCTTGGCGGGCCCGCCATTGCTGGCGAGAAGAATCAGCGCCAAGTCG
TGCCTTACGCAGTCTGTTTGCAAGAGCCACCGAGCGAACAGGAGGATCAG
ATATTGCGGCGCTTCCACGACATTGGAAATAAGTTTGCCAAGGTAGAGCA
CATCAAAGCAGGCACCAAAATCACATGTGTGCGTATGCCAAATGTCCCGG
GTGATGAATGTCTGCGATTCAAGGTAGAGATCGTCATTCGCAAACGCAAG
AGAGTGGAAAAAGAGCTCACCAAGAAGGAACGCAAGAAAAGAAATAAGAG
GCAGAGGAGACAGGTGCGTTCGCCGCGCTTCTTACCGGCTCGTGGTCGTG
GCGAAGCTTCGCGCGCATCCGAACACGATCTCGCACAGTTTGATACCGAT
GACGCTTCTGACAGTGACAGCGAGTGGGAGAACGGATTCGAGAGTGATTC
CACTTCGGATGAACTCCCGTCCAGTCGCTTGGCCAAGCGCTTCAAACCGT
CTCGTCCTTTCGATGATCTCAACCGCAGTGAGGTCTTTTTCGATATCAAT
GATGAAGTAGTTTCTTAA
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