Ggra7001.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7001.t2
Unique NameGgra7001.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length421
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000211_piloncontigtig00000211_pilon:155815..157077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0167139
PFAMsSET
Max annot lvl554915|Amoebozoa
Evalue1.43e-10
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota,3XCN5@554915|Amoebozoa
DescriptionSET domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7001Ggra7001Gracilaria gracilis GNS1m malegenetig00000211_pilon 155815..157407 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7001.t2.stop1Ggra7001.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000211_pilon 155815..155817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7001.t2.CDS1Ggra7001.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000211_pilon 155815..157077 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7001.t2.exon1Ggra7001.t2.exon1Gracilaria gracilis GNS1m maleexontig00000211_pilon 155815..157077 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7001.t2.start1Ggra7001.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000211_pilon 157075..157077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7001.t2Ggra7001.t2Gracilaria gracilis GNS1m malepolypeptidetig00000211_pilon 155815..157077 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7001.t2 ID=Ggra7001.t2|Name=Ggra7001.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=421bp
MLGGRSRWARYIALLPRSLQEMGVPLGVDDETLRELFAGTGVDDVAISMK
RELQDVFTDVVAPILRTRATEMGLGKECLRHVRRERFLWACGVVASRAFD
VGAGLGNCLVAVADMFNHSGGGREHVHIEAVGAWRGDDAEESDDDSDDSD
DKDEEHDKDDNNNDEDDRDNDDEDDNDDVDENDDDGNSHKQEEEEEEEHA
LKMVCVRDAHTDEELFNTFGDKSNIRLFLHYGFTERNSQQHAALLSRHSI
EQAARLEHQSQQEQDAATRPLRTRCLSLADELMADEQQHGQLELTSDEPL
PPPLLALLAVLTRAPHRLRALAHDDLHFAQWLLHLRPRDVLADDDGGARA
RRVLRRVVDDKCAAMAARRAAGETGGGREGAVALAARRVRHSTAAALQQL
RRVIDDGGDDVRGEKRARLH*
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spliced messenger RNA

>Ggra7001.t2 ID=Ggra7001.t2|Name=Ggra7001.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000211_pilon:155815..157077- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGGCGGGCGCTCCAGATGGGCGCGCTACATCGCGTTGCTTCCGCG
CTCGCTGCAGGAGATGGGCGTGCCGCTCGGCGTGGACGACGAGACGCTGC
GCGAACTTTTCGCCGGCACTGGTGTGGACGACGTGGCGATCAGCATGAAA
CGCGAGCTACAAGACGTGTTCACCGACGTGGTGGCGCCGATTTTGAGGAC
GCGCGCAACCGAGATGGGGCTCGGGAAGGAATGTTTGCGGCACGTGCGAC
GCGAGCGCTTCTTGTGGGCGTGCGGTGTGGTGGCGTCGCGCGCGTTCGAC
GTGGGCGCAGGGCTCGGCAACTGCCTTGTGGCCGTGGCGGACATGTTCAA
CCACAGCGGCGGCGGCCGCGAGCACGTGCACATCGAGGCGGTGGGCGCGT
GGCGTGGCGACGATGCTGAGGAGAGCGACGACGATAGCGACGACAGCGAC
GACAAGGACGAGGAGCATGACAAGGACGACAACAACAACGACGAGGACGA
CAGAGACAACGACGACGAGGACGACAATGACGACGTAGACGAAAACGACG
ACGACGGCAACAGCCACAAGCAGGAGGAAGAGGAAGAGGAAGAGCACGCG
TTGAAGATGGTGTGCGTGCGCGACGCGCACACGGACGAAGAACTGTTCAA
CACGTTTGGAGACAAGAGCAACATACGGCTGTTCCTGCACTACGGCTTCA
CGGAGCGCAACAGCCAACAGCACGCCGCGTTGCTCTCGCGCCACTCAATC
GAGCAAGCAGCGCGGCTCGAGCACCAGTCCCAGCAAGAACAAGACGCAGC
CACCCGCCCGCTACGCACGCGCTGCCTCTCGCTGGCAGACGAGCTGATGG
CAGACGAGCAACAACACGGGCAGCTGGAGCTGACGAGCGACGAGCCGTTG
CCGCCGCCGCTGCTCGCGCTGCTCGCCGTGCTCACGCGCGCGCCGCATCG
GCTGCGCGCGCTGGCGCACGACGACTTGCACTTTGCGCAGTGGCTGCTGC
ACCTGCGGCCGCGCGACGTGCTGGCGGATGACGACGGCGGCGCGCGTGCG
AGGCGCGTGCTGCGACGCGTCGTTGACGACAAGTGCGCGGCGATGGCGGC
GCGGCGCGCGGCGGGCGAGACGGGCGGCGGGCGCGAGGGCGCGGTGGCGC
TGGCGGCGCGGCGCGTACGCCACTCGACGGCGGCGGCTTTGCAGCAGCTG
CGGCGTGTTATTGACGACGGCGGGGATGATGTTCGAGGCGAGAAGCGCGC
GCGCTTACATTGA
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protein sequence of Ggra7001.t2

>Ggra7001.t2 ID=Ggra7001.t2|Name=Ggra7001.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=421bp
MLGGRSRWARYIALLPRSLQEMGVPLGVDDETLRELFAGTGVDDVAISMK
RELQDVFTDVVAPILRTRATEMGLGKECLRHVRRERFLWACGVVASRAFD
VGAGLGNCLVAVADMFNHSGGGREHVHIEAVGAWRGDDAEESDDDSDDSD
DKDEEHDKDDNNNDEDDRDNDDEDDNDDVDENDDDGNSHKQEEEEEEEHA
LKMVCVRDAHTDEELFNTFGDKSNIRLFLHYGFTERNSQQHAALLSRHSI
EQAARLEHQSQQEQDAATRPLRTRCLSLADELMADEQQHGQLELTSDEPL
PPPLLALLAVLTRAPHRLRALAHDDLHFAQWLLHLRPRDVLADDDGGARA
RRVLRRVVDDKCAAMAARRAAGETGGGREGAVALAARRVRHSTAAALQQL
RRVIDDGGDDVRGEKRARLH*
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mRNA from alignment at tig00000211_pilon:155815..157077-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7001.t2 ID=Ggra7001.t2|Name=Ggra7001.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000211_pilon:155815..157077- (Gracilaria gracilis GNS1m male)
ATGTTGGGCGGGCGCTCCAGATGGGCGCGCTACATCGCGTTGCTTCCGCG
CTCGCTGCAGGAGATGGGCGTGCCGCTCGGCGTGGACGACGAGACGCTGC
GCGAACTTTTCGCCGGCACTGGTGTGGACGACGTGGCGATCAGCATGAAA
CGCGAGCTACAAGACGTGTTCACCGACGTGGTGGCGCCGATTTTGAGGAC
GCGCGCAACCGAGATGGGGCTCGGGAAGGAATGTTTGCGGCACGTGCGAC
GCGAGCGCTTCTTGTGGGCGTGCGGTGTGGTGGCGTCGCGCGCGTTCGAC
GTGGGCGCAGGGCTCGGCAACTGCCTTGTGGCCGTGGCGGACATGTTCAA
CCACAGCGGCGGCGGCCGCGAGCACGTGCACATCGAGGCGGTGGGCGCGT
GGCGTGGCGACGATGCTGAGGAGAGCGACGACGATAGCGACGACAGCGAC
GACAAGGACGAGGAGCATGACAAGGACGACAACAACAACGACGAGGACGA
CAGAGACAACGACGACGAGGACGACAATGACGACGTAGACGAAAACGACG
ACGACGGCAACAGCCACAAGCAGGAGGAAGAGGAAGAGGAAGAGCACGCG
TTGAAGATGGTGTGCGTGCGCGACGCGCACACGGACGAAGAACTGTTCAA
CACGTTTGGAGACAAGAGCAACATACGGCTGTTCCTGCACTACGGCTTCA
CGGAGCGCAACAGCCAACAGCACGCCGCGTTGCTCTCGCGCCACTCAATC
GAGCAAGCAGCGCGGCTCGAGCACCAGTCCCAGCAAGAACAAGACGCAGC
CACCCGCCCGCTACGCACGCGCTGCCTCTCGCTGGCAGACGAGCTGATGG
CAGACGAGCAACAACACGGGCAGCTGGAGCTGACGAGCGACGAGCCGTTG
CCGCCGCCGCTGCTCGCGCTGCTCGCCGTGCTCACGCGCGCGCCGCATCG
GCTGCGCGCGCTGGCGCACGACGACTTGCACTTTGCGCAGTGGCTGCTGC
ACCTGCGGCCGCGCGACGTGCTGGCGGATGACGACGGCGGCGCGCGTGCG
AGGCGCGTGCTGCGACGCGTCGTTGACGACAAGTGCGCGGCGATGGCGGC
GCGGCGCGCGGCGGGCGAGACGGGCGGCGGGCGCGAGGGCGCGGTGGCGC
TGGCGGCGCGGCGCGTACGCCACTCGACGGCGGCGGCTTTGCAGCAGCTG
CGGCGTGTTATTGACGACGGCGGGGATGATGTTCGAGGCGAGAAGCGCGC
GCGCTTACATTGA
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Coding sequence (CDS) from alignment at tig00000211_pilon:155815..157077-

>Ggra7001.t2 ID=Ggra7001.t2|Name=Ggra7001.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1263bp|location=Sequence derived from alignment at tig00000211_pilon:155815..157077- (Gracilaria gracilis GNS1m male)
ATGTTGGGCGGGCGCTCCAGATGGGCGCGCTACATCGCGTTGCTTCCGCG
CTCGCTGCAGGAGATGGGCGTGCCGCTCGGCGTGGACGACGAGACGCTGC
GCGAACTTTTCGCCGGCACTGGTGTGGACGACGTGGCGATCAGCATGAAA
CGCGAGCTACAAGACGTGTTCACCGACGTGGTGGCGCCGATTTTGAGGAC
GCGCGCAACCGAGATGGGGCTCGGGAAGGAATGTTTGCGGCACGTGCGAC
GCGAGCGCTTCTTGTGGGCGTGCGGTGTGGTGGCGTCGCGCGCGTTCGAC
GTGGGCGCAGGGCTCGGCAACTGCCTTGTGGCCGTGGCGGACATGTTCAA
CCACAGCGGCGGCGGCCGCGAGCACGTGCACATCGAGGCGGTGGGCGCGT
GGCGTGGCGACGATGCTGAGGAGAGCGACGACGATAGCGACGACAGCGAC
GACAAGGACGAGGAGCATGACAAGGACGACAACAACAACGACGAGGACGA
CAGAGACAACGACGACGAGGACGACAATGACGACGTAGACGAAAACGACG
ACGACGGCAACAGCCACAAGCAGGAGGAAGAGGAAGAGGAAGAGCACGCG
TTGAAGATGGTGTGCGTGCGCGACGCGCACACGGACGAAGAACTGTTCAA
CACGTTTGGAGACAAGAGCAACATACGGCTGTTCCTGCACTACGGCTTCA
CGGAGCGCAACAGCCAACAGCACGCCGCGTTGCTCTCGCGCCACTCAATC
GAGCAAGCAGCGCGGCTCGAGCACCAGTCCCAGCAAGAACAAGACGCAGC
CACCCGCCCGCTACGCACGCGCTGCCTCTCGCTGGCAGACGAGCTGATGG
CAGACGAGCAACAACACGGGCAGCTGGAGCTGACGAGCGACGAGCCGTTG
CCGCCGCCGCTGCTCGCGCTGCTCGCCGTGCTCACGCGCGCGCCGCATCG
GCTGCGCGCGCTGGCGCACGACGACTTGCACTTTGCGCAGTGGCTGCTGC
ACCTGCGGCCGCGCGACGTGCTGGCGGATGACGACGGCGGCGCGCGTGCG
AGGCGCGTGCTGCGACGCGTCGTTGACGACAAGTGCGCGGCGATGGCGGC
GCGGCGCGCGGCGGGCGAGACGGGCGGCGGGCGCGAGGGCGCGGTGGCGC
TGGCGGCGCGGCGCGTACGCCACTCGACGGCGGCGGCTTTGCAGCAGCTG
CGGCGTGTTATTGACGACGGCGGGGATGATGTTCGAGGCGAGAAGCGCGC
GCGCTTACATTGA
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