Ggra6946.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6946.t1
Unique NameGgra6946.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:193526..194965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13249.RPRC009947-PA
Preferred namesu(Hw)
PFAMszf-C2H2,zf-C2H2_6,zf-met
Max annot lvl33208|Metazoa
GOsGO:0000785,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005700,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0014070,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031490,GO:0031935,GO:0031936,GO:0032774,GO:0033043,GO:0033044,GO:0033993,GO:0034641,GO:0034645,GO:0034654,GO:0035075,GO:0036314,GO:0040029,GO:0042221,GO:0043035,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0060968,GO:0060969,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097305,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901654,GO:1901700,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:2000112,GO:2000113,GO:2001141,GO:2001251
Evalue6.16e-09
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,38B8C@33154|Opisthokonta,3BMXZ@33208|Metazoa,3D0IG@33213|Bilateria,41V4W@6656|Arthropoda,3SGN6@50557|Insecta,3E7UH@33342|Paraneoptera
DescriptionC2H2-type zinc finger
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6946Ggra6946Gracilaria gracilis GNS1m malegenetig00000115_pilon 193526..194965 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6946.t1.start1Ggra6946.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 193526..193528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6946.t1.CDS1Ggra6946.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 193526..193554 +
Ggra6946.t1.CDS2Ggra6946.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000115_pilon 193852..193910 +
Ggra6946.t1.CDS3Ggra6946.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000115_pilon 194005..194544 +
Ggra6946.t1.CDS4Ggra6946.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000115_pilon 194647..194657 +
Ggra6946.t1.CDS5Ggra6946.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000115_pilon 194750..194830 +
Ggra6946.t1.CDS6Ggra6946.t1.CDS6Gracilaria gracilis GNS1m maleCDStig00000115_pilon 194915..194965 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6946.t1.exon1Ggra6946.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 193526..193554 +
Ggra6946.t1.exon2Ggra6946.t1.exon2Gracilaria gracilis GNS1m maleexontig00000115_pilon 193852..193910 +
Ggra6946.t1.exon3Ggra6946.t1.exon3Gracilaria gracilis GNS1m maleexontig00000115_pilon 194005..194544 +
Ggra6946.t1.exon4Ggra6946.t1.exon4Gracilaria gracilis GNS1m maleexontig00000115_pilon 194647..194657 +
Ggra6946.t1.exon5Ggra6946.t1.exon5Gracilaria gracilis GNS1m maleexontig00000115_pilon 194750..194830 +
Ggra6946.t1.exon6Ggra6946.t1.exon6Gracilaria gracilis GNS1m maleexontig00000115_pilon 194915..194965 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6946.t1.intron1Ggra6946.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000115_pilon 193555..193851 +
Ggra6946.t1.intron2Ggra6946.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000115_pilon 193911..194004 +
Ggra6946.t1.intron3Ggra6946.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000115_pilon 194545..194646 +
Ggra6946.t1.intron4Ggra6946.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000115_pilon 194658..194749 +
Ggra6946.t1.intron5Ggra6946.t1.intron5Gracilaria gracilis GNS1m maleintrontig00000115_pilon 194831..194914 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6946.t1.stop1Ggra6946.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 194963..194965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6946.t1Ggra6946.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 193526..194965 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6946.t1 ID=Ggra6946.t1|Name=Ggra6946.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=257bp
LSPSRPCFKSKVYMLPIPLPCFFPSALLASKSPRYPTAMDLSHIVHGLKP
KVETRANSPPHARSRPSSPQPRQAVSSSSSAAPRPAAARTACVPSHSNQV
GRSASSRAPADHSPSQPAPTAVGSASGSVLTCDKCPRTFASRVQFDQHIS
VFHARSRVPSRQREANFVCSYCGKKFTSPSKRTLHVNATHMGLKPYQCET
CSKSFGYKGDLGKHRVSHSGEKPYSCYICGAKFARNFYVKRHIETIHEKK
NGSSSL*
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spliced messenger RNA

>Ggra6946.t1 ID=Ggra6946.t1|Name=Ggra6946.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000115_pilon:193526..194965+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTCCCCATCTCGTCCTTGTTTCAAATCCAAAGTGTATATGCTCCCAAT
TCCGTTACCTTGCTTCTTTCCCAGTGCCTTGCTGGCATCCAAATCCCCTC
GTTACCCAACCGCCATGGACCTCTCACACATCGTGCACGGACTCAAGCCC
AAAGTAGAGACGCGTGCAAACTCACCGCCCCACGCCCGTTCGCGCCCGTC
CTCACCACAGCCGCGCCAAGCCGTGTCCTCCTCTTCTTCTGCCGCCCCGA
GACCTGCGGCAGCTCGCACCGCGTGTGTACCGTCACACAGCAACCAGGTG
GGACGCTCTGCGAGCTCGAGAGCGCCTGCGGACCATTCTCCGTCACAGCC
CGCGCCGACTGCGGTGGGAAGCGCCAGCGGAAGTGTGCTGACGTGCGACA
AGTGTCCCAGGACGTTTGCGTCGCGCGTGCAGTTCGATCAGCACATTTCC
GTGTTCCACGCGCGGTCGAGGGTGCCCTCGCGACAGAGAGAGGCCAACTT
CGTATGCTCATACTGCGGAAAGAAGTTCACGTCGCCGTCCAAACGCACGC
TGCACGTGAACGCCACGCACATGGGGCTCAAGCCTTACCAGTGTGAAACT
TGTTCCAAGTCGTTTGGTTATAAGGGAGACCTTGGAAAGCATAGGGTGTC
CCATTCTGGGGAGAAACCGTACTCGTGCTATATATGTGGGGCGAAATTCG
CAAGGAACTTCTACGTGAAGAGGCACATAGAGACCATCCATGAAAAGAAG
AATGGCTCCTCTTCTTTGTAG
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protein sequence of Ggra6946.t1

>Ggra6946.t1 ID=Ggra6946.t1|Name=Ggra6946.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=257bp
LSPSRPCFKSKVYMLPIPLPCFFPSALLASKSPRYPTAMDLSHIVHGLKP
KVETRANSPPHARSRPSSPQPRQAVSSSSSAAPRPAAARTACVPSHSNQV
GRSASSRAPADHSPSQPAPTAVGSASGSVLTCDKCPRTFASRVQFDQHIS
VFHARSRVPSRQREANFVCSYCGKKFTSPSKRTLHVNATHMGLKPYQCET
CSKSFGYKGDLGKHRVSHSGEKPYSCYICGAKFARNFYVKRHIETIHEKK
NGSSSL*
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mRNA from alignment at tig00000115_pilon:193526..194965+

Legend: start_codonpolypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6946.t1 ID=Ggra6946.t1|Name=Ggra6946.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000115_pilon:193526..194965+ (Gracilaria gracilis GNS1m male)
TTGTCCCCATCTCGTCCTTGTTTCAAATCGTGAGTTCTGCCCAAGTAACA
CCTTTCCTCAGTAACAACTTGTTTCCGCACCATCTTTACCCTCTCCCGCT
AACCGGGGTAATCCTCCCGCAACTCCACTCACTCCCCCAATATAATGTCC
TCTGCGCCTGAATTGCTGTTTTGCTTCTTGTACTCTACCTATCCACATCT
TCCATGTCCTTTCTTTCACTGTATACCCCTCCCATCCGCTTGAACATAAT
CCCCCTTCTCCGTTCCATTCGCGTAACCCTCGCTCGGTCGAATGCACACC
CACTCCCCGTCTCTTCAACCCCACAGCAAAGTGTATATGCTCCCAATTCC
GTTACCTTGCTTCTTTCCCAGTGCCTTGCTGGCATGTGCGTGCTAACACC
CCTCCCCCACGCCTCCCGCTCTGACTCAAGTACCAACTGACCGTTTTCCA
TTCCACCCGGCCCATACAATTCGAATCAGCCAAATCCCCTCGTTACCCAA
CCGCCATGGACCTCTCACACATCGTGCACGGACTCAAGCCCAAAGTAGAG
ACGCGTGCAAACTCACCGCCCCACGCCCGTTCGCGCCCGTCCTCACCACA
GCCGCGCCAAGCCGTGTCCTCCTCTTCTTCTGCCGCCCCGAGACCTGCGG
CAGCTCGCACCGCGTGTGTACCGTCACACAGCAACCAGGTGGGACGCTCT
GCGAGCTCGAGAGCGCCTGCGGACCATTCTCCGTCACAGCCCGCGCCGAC
TGCGGTGGGAAGCGCCAGCGGAAGTGTGCTGACGTGCGACAAGTGTCCCA
GGACGTTTGCGTCGCGCGTGCAGTTCGATCAGCACATTTCCGTGTTCCAC
GCGCGGTCGAGGGTGCCCTCGCGACAGAGAGAGGCCAACTTCGTATGCTC
ATACTGCGGAAAGAAGTTCACGTCGCCGTCCAAACGCACGCTGCACGTGA
ACGCCACGCACATGGGGCTCAAGCCTTACCAGTGTGAAACTTGTTCCAAG
TCGTTTGGTTATAAGGGAGGTACGTCCAGCGCAGGTGAGCTTCCATCGTT
GATTCGCTGTCAACTAACAGAACTGAATCATGTGGATTTGAATATCTGTG
CGTTTTGGCCGTGTCACACAGACCTTGGAAAGGTGAGTTGCTATAATTAC
TGCCATGCACAATCAAACCAGATGCGCCTCTTGCTTGTCTAACTTTGTAT
CACTGCTTTGCGGCTGAATGATAGCATAGGGTGTCCCATTCTGGGGAGAA
ACCGTACTCGTGCTATATATGTGGGGCGAAATTCGCAAGGAACTTCTACG
TGAAGGTAAGTGGCGCCACGAGCGTTTGGCTGCTGTCCGGGGCTTTGGAG
GAGAAGCAGAATCTAATCAACCCGTTTGTACATCTGTAGAGGCACATAGA
GACCATCCATGAAAAGAAGAATGGCTCCTCTTCTTTGTAG
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Coding sequence (CDS) from alignment at tig00000115_pilon:193526..194965+

>Ggra6946.t1 ID=Ggra6946.t1|Name=Ggra6946.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000115_pilon:193526..194965+ (Gracilaria gracilis GNS1m male)
TTGTCCCCATCTCGTCCTTGTTTCAAATCCAAAGTGTATATGCTCCCAAT
TCCGTTACCTTGCTTCTTTCCCAGTGCCTTGCTGGCATCCAAATCCCCTC
GTTACCCAACCGCCATGGACCTCTCACACATCGTGCACGGACTCAAGCCC
AAAGTAGAGACGCGTGCAAACTCACCGCCCCACGCCCGTTCGCGCCCGTC
CTCACCACAGCCGCGCCAAGCCGTGTCCTCCTCTTCTTCTGCCGCCCCGA
GACCTGCGGCAGCTCGCACCGCGTGTGTACCGTCACACAGCAACCAGGTG
GGACGCTCTGCGAGCTCGAGAGCGCCTGCGGACCATTCTCCGTCACAGCC
CGCGCCGACTGCGGTGGGAAGCGCCAGCGGAAGTGTGCTGACGTGCGACA
AGTGTCCCAGGACGTTTGCGTCGCGCGTGCAGTTCGATCAGCACATTTCC
GTGTTCCACGCGCGGTCGAGGGTGCCCTCGCGACAGAGAGAGGCCAACTT
CGTATGCTCATACTGCGGAAAGAAGTTCACGTCGCCGTCCAAACGCACGC
TGCACGTGAACGCCACGCACATGGGGCTCAAGCCTTACCAGTGTGAAACT
TGTTCCAAGTCGTTTGGTTATAAGGGAGACCTTGGAAAGCATAGGGTGTC
CCATTCTGGGGAGAAACCGTACTCGTGCTATATATGTGGGGCGAAATTCG
CAAGGAACTTCTACGTGAAGAGGCACATAGAGACCATCCATGAAAAGAAG
AATGGCTCCTCTTCTTTGTAG
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