Ggra6941.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6941.t1
Unique NameGgra6941.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:185607..186170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog221288.JH992901_gene5121
PFAMsDoxX_2
Max annot lvl1117|Cyanobacteria
Evalue1.31e-11
EggNOG OGsCOG4270@1|root,COG4270@2|Bacteria,1G5UP@1117|Cyanobacteria,1JK0Q@1189|Stigonemataceae
DescriptionDoxX-like family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6941Ggra6941Gracilaria gracilis GNS1m malegenetig00000115_pilon 185607..186170 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6941.t1.stop1Ggra6941.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 185607..185609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6941.t1.CDS1Ggra6941.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 185607..186170 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6941.t1.exon1Ggra6941.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 185607..186170 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6941.t1.start1Ggra6941.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 186168..186170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6941.t1Ggra6941.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 185607..186170 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6941.t1 ID=Ggra6941.t1|Name=Ggra6941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=188bp
MSSKRLTPELAPGMAPSADYFIKLIAPYKGTISLLPFLFFSVEALIAVIC
SQVYGDSDWLLKFSFSQLLAINMVFAGVLHFHGPLYEFYTSMIFVPFKDF
WLYSAGLIMIFGGLGIVFAPTQVLSAYCLMAVLVVMFPGNVACVFQEKPR
RLVCNGSMIGAILRLPIQFLFIAWAKWFTSPPLPRPF*
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spliced messenger RNA

>Ggra6941.t1 ID=Ggra6941.t1|Name=Ggra6941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000115_pilon:185607..186170- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCGAAGCGACTTACTCCAGAACTGGCTCCTGGGATGGCCCCGTC
GGCTGATTACTTCATCAAGTTGATTGCTCCGTACAAGGGAACGATTTCCC
TTCTTCCGTTCTTGTTTTTCTCTGTGGAAGCTCTCATTGCCGTTATATGT
TCTCAGGTGTACGGCGATTCAGACTGGCTGCTCAAGTTTAGCTTCTCGCA
ACTGCTTGCAATAAACATGGTGTTCGCCGGCGTGTTGCATTTTCATGGGC
CTCTCTACGAATTCTATACCTCGATGATATTTGTTCCGTTCAAGGACTTT
TGGCTGTACTCGGCAGGATTAATTATGATATTCGGAGGGCTCGGAATTGT
TTTCGCTCCTACGCAAGTGCTCAGTGCGTATTGTTTGATGGCTGTCTTAG
TAGTCATGTTTCCTGGAAACGTCGCTTGCGTATTTCAGGAGAAGCCAAGG
AGGCTAGTGTGTAATGGATCCATGATAGGTGCGATTCTACGTTTACCGAT
ACAATTTCTGTTCATTGCTTGGGCGAAATGGTTCACATCGCCACCACTCC
CTCGCCCATTCTAA
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protein sequence of Ggra6941.t1

>Ggra6941.t1 ID=Ggra6941.t1|Name=Ggra6941.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MSSKRLTPELAPGMAPSADYFIKLIAPYKGTISLLPFLFFSVEALIAVIC
SQVYGDSDWLLKFSFSQLLAINMVFAGVLHFHGPLYEFYTSMIFVPFKDF
WLYSAGLIMIFGGLGIVFAPTQVLSAYCLMAVLVVMFPGNVACVFQEKPR
RLVCNGSMIGAILRLPIQFLFIAWAKWFTSPPLPRPF*
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mRNA from alignment at tig00000115_pilon:185607..186170-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6941.t1 ID=Ggra6941.t1|Name=Ggra6941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000115_pilon:185607..186170- (Gracilaria gracilis GNS1m male)
ATGTCCTCGAAGCGACTTACTCCAGAACTGGCTCCTGGGATGGCCCCGTC
GGCTGATTACTTCATCAAGTTGATTGCTCCGTACAAGGGAACGATTTCCC
TTCTTCCGTTCTTGTTTTTCTCTGTGGAAGCTCTCATTGCCGTTATATGT
TCTCAGGTGTACGGCGATTCAGACTGGCTGCTCAAGTTTAGCTTCTCGCA
ACTGCTTGCAATAAACATGGTGTTCGCCGGCGTGTTGCATTTTCATGGGC
CTCTCTACGAATTCTATACCTCGATGATATTTGTTCCGTTCAAGGACTTT
TGGCTGTACTCGGCAGGATTAATTATGATATTCGGAGGGCTCGGAATTGT
TTTCGCTCCTACGCAAGTGCTCAGTGCGTATTGTTTGATGGCTGTCTTAG
TAGTCATGTTTCCTGGAAACGTCGCTTGCGTATTTCAGGAGAAGCCAAGG
AGGCTAGTGTGTAATGGATCCATGATAGGTGCGATTCTACGTTTACCGAT
ACAATTTCTGTTCATTGCTTGGGCGAAATGGTTCACATCGCCACCACTCC
CTCGCCCATTCTAA
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Coding sequence (CDS) from alignment at tig00000115_pilon:185607..186170-

>Ggra6941.t1 ID=Ggra6941.t1|Name=Ggra6941.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=564bp|location=Sequence derived from alignment at tig00000115_pilon:185607..186170- (Gracilaria gracilis GNS1m male)
ATGTCCTCGAAGCGACTTACTCCAGAACTGGCTCCTGGGATGGCCCCGTC
GGCTGATTACTTCATCAAGTTGATTGCTCCGTACAAGGGAACGATTTCCC
TTCTTCCGTTCTTGTTTTTCTCTGTGGAAGCTCTCATTGCCGTTATATGT
TCTCAGGTGTACGGCGATTCAGACTGGCTGCTCAAGTTTAGCTTCTCGCA
ACTGCTTGCAATAAACATGGTGTTCGCCGGCGTGTTGCATTTTCATGGGC
CTCTCTACGAATTCTATACCTCGATGATATTTGTTCCGTTCAAGGACTTT
TGGCTGTACTCGGCAGGATTAATTATGATATTCGGAGGGCTCGGAATTGT
TTTCGCTCCTACGCAAGTGCTCAGTGCGTATTGTTTGATGGCTGTCTTAG
TAGTCATGTTTCCTGGAAACGTCGCTTGCGTATTTCAGGAGAAGCCAAGG
AGGCTAGTGTGTAATGGATCCATGATAGGTGCGATTCTACGTTTACCGAT
ACAATTTCTGTTCATTGCTTGGGCGAAATGGTTCACATCGCCACCACTCC
CTCGCCCATTCTAA
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