Ggra6930.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6930.t1
Unique NameGgra6930.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:93553..95264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6930Ggra6930Gracilaria gracilis GNS1m malegenetig00000115_pilon 93553..95264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6930.t1Ggra6930.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 93553..95264 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6930.t1.stop1Ggra6930.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 93553..93555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6930.t1.CDS1Ggra6930.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 93553..94478 -
Ggra6930.t1.CDS2Ggra6930.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000115_pilon 94709..95264 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6930.t1.exon1Ggra6930.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 93553..94478 -
Ggra6930.t1.exon2Ggra6930.t1.exon2Gracilaria gracilis GNS1m maleexontig00000115_pilon 94709..95264 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6930.t1.intron1Ggra6930.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000115_pilon 94479..94708 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6930.t1.start1Ggra6930.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 95262..95264 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6930.t1 ID=Ggra6930.t1|Name=Ggra6930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp
MKVTKNGSHRVIERGLKTSFRKVSTVSVHDPEVAGELSELRTREEISHLA
RGKSIASEIEGHSSVAKEPRNMGSLHELLAEQRKLLCSTVQNRCDLFRGK
RRRFVKPIEAVEEKSMEVLWNEMVNELLLLDPSFLTSPDALLMDRTKAER
GKVVYMGLKVNNENCSDIEEFFRLRSRNKIVMTKRVELETSSNNWLSKLG
EFLCRTASVAKTSARRVSQDRKLIDLVSQSDKLLRDEDLRKAFCVSKYAL
KDIFVTYAKDEAIQIGMFGERLRKKKDLIHKWCLNFLAAMVFRGGGQRPQ
AIANLQVPYEADFNREFEIEMGKYFSIRTKLEKVDRDLRFSVVLMPLSLG
KFVELHVKVMPPFVLQQFDSIRSKQPWSLLVHSRDGGQLSTKSVRNSIRT
FMKNIDGRFEYVTGMVVRSSFATSMVHAFRQGTVGNCLSEARYLELLGNR
MNTKLEQLKDAYVKIKRVNYADGVRLAMEHFVNVMKKGDDEQS*
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spliced messenger RNA

>Ggra6930.t1 ID=Ggra6930.t1|Name=Ggra6930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000115_pilon:93553..95264- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGTGACCAAAAACGGTTCCCATCGTGTCATTGAAAGGGGGTTGAA
AACATCGTTTCGAAAAGTCTCTACCGTGTCTGTGCATGATCCCGAAGTTG
CCGGCGAGCTCAGTGAGCTTCGAACACGAGAAGAGATATCACATCTCGCT
CGAGGCAAATCTATAGCTTCCGAAATTGAAGGCCATTCTAGCGTTGCCAA
AGAACCGAGAAATATGGGAAGCTTACATGAACTTTTGGCGGAGCAGCGCA
AGTTGTTGTGCTCTACTGTACAAAACCGATGCGATCTGTTTAGAGGAAAG
CGTCGCAGATTCGTGAAACCCATTGAAGCCGTGGAAGAGAAGTCTATGGA
GGTTCTCTGGAATGAAATGGTAAACGAACTTCTTCTTCTTGATCCGTCTT
TTTTAACAAGCCCGGATGCCCTGCTGATGGATCGCACTAAAGCAGAACGT
GGAAAGGTGGTTTACATGGGTTTGAAGGTAAATAATGAGAACTGTTCCGA
TATAGAAGAGTTTTTCAGACTGCGTTCTCGAAATAAGATTGTCATGACCA
AACGCGTTGAATTGGAAACCTCCTCAAACAACTGGCTTTCGAAACTGGGA
GAATTTCTCTGTCGTACTGCGTCCGTTGCAAAAACAAGCGCGCGCAGGGT
GAGCCAAGATCGGAAACTCATTGATCTTGTTTCTCAAAGCGATAAACTCC
TTAGGGATGAAGATCTCCGAAAAGCTTTTTGTGTTTCGAAGTATGCTCTG
AAAGATATTTTTGTGACATACGCAAAGGATGAAGCAATTCAGATAGGAAT
GTTTGGGGAGAGACTTCGCAAGAAAAAGGATCTGATTCACAAATGGTGTC
TCAACTTTTTGGCGGCTATGGTCTTTCGAGGTGGAGGTCAAAGGCCACAG
GCAATTGCGAACCTCCAGGTTCCGTATGAGGCAGATTTTAACAGAGAATT
TGAGATTGAGATGGGAAAGTATTTTTCGATTCGAACAAAGCTAGAAAAGG
TGGACCGTGATCTGCGCTTTTCTGTGGTTCTAATGCCATTATCGTTGGGA
AAGTTTGTAGAGCTTCATGTGAAAGTTATGCCACCATTTGTACTCCAACA
ATTTGATTCCATAAGAAGCAAGCAACCGTGGTCTCTTTTGGTTCATTCTA
GGGATGGAGGTCAGCTAAGTACGAAGAGCGTGAGAAATTCGATCCGAACA
TTCATGAAGAACATTGATGGACGATTCGAATATGTGACAGGAATGGTAGT
TCGATCCAGTTTTGCCACTTCAATGGTTCATGCGTTCCGCCAGGGAACGG
TGGGGAATTGTTTATCAGAAGCAAGGTATCTCGAATTGCTGGGCAATCGA
ATGAATACAAAGCTCGAGCAGCTTAAAGATGCTTATGTGAAAATCAAACG
GGTTAACTACGCGGATGGTGTGCGGCTGGCTATGGAGCACTTTGTTAATG
TTATGAAAAAAGGCGATGATGAACAGTCTTAG
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protein sequence of Ggra6930.t1

>Ggra6930.t1 ID=Ggra6930.t1|Name=Ggra6930.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=494bp
MKVTKNGSHRVIERGLKTSFRKVSTVSVHDPEVAGELSELRTREEISHLA
RGKSIASEIEGHSSVAKEPRNMGSLHELLAEQRKLLCSTVQNRCDLFRGK
RRRFVKPIEAVEEKSMEVLWNEMVNELLLLDPSFLTSPDALLMDRTKAER
GKVVYMGLKVNNENCSDIEEFFRLRSRNKIVMTKRVELETSSNNWLSKLG
EFLCRTASVAKTSARRVSQDRKLIDLVSQSDKLLRDEDLRKAFCVSKYAL
KDIFVTYAKDEAIQIGMFGERLRKKKDLIHKWCLNFLAAMVFRGGGQRPQ
AIANLQVPYEADFNREFEIEMGKYFSIRTKLEKVDRDLRFSVVLMPLSLG
KFVELHVKVMPPFVLQQFDSIRSKQPWSLLVHSRDGGQLSTKSVRNSIRT
FMKNIDGRFEYVTGMVVRSSFATSMVHAFRQGTVGNCLSEARYLELLGNR
MNTKLEQLKDAYVKIKRVNYADGVRLAMEHFVNVMKKGDDEQS*
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mRNA from alignment at tig00000115_pilon:93553..95264-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6930.t1 ID=Ggra6930.t1|Name=Ggra6930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1712bp|location=Sequence derived from alignment at tig00000115_pilon:93553..95264- (Gracilaria gracilis GNS1m male)
ATGAAAGTGACCAAAAACGGTTCCCATCGTGTCATTGAAAGGGGGTTGAA
AACATCGTTTCGAAAAGTCTCTACCGTGTCTGTGCATGATCCCGAAGTTG
CCGGCGAGCTCAGTGAGCTTCGAACACGAGAAGAGATATCACATCTCGCT
CGAGGCAAATCTATAGCTTCCGAAATTGAAGGCCATTCTAGCGTTGCCAA
AGAACCGAGAAATATGGGAAGCTTACATGAACTTTTGGCGGAGCAGCGCA
AGTTGTTGTGCTCTACTGTACAAAACCGATGCGATCTGTTTAGAGGAAAG
CGTCGCAGATTCGTGAAACCCATTGAAGCCGTGGAAGAGAAGTCTATGGA
GGTTCTCTGGAATGAAATGGTAAACGAACTTCTTCTTCTTGATCCGTCTT
TTTTAACAAGCCCGGATGCCCTGCTGATGGATCGCACTAAAGCAGAACGT
GGAAAGGTGGTTTACATGGGTTTGAAGGTAAATAATGAGAACTGTTCCGA
TATAGAAGAGTTTTTCAGACTGCGTTCTCGAAATAAGATTGTCATGACCA
AACGCGGTACAAGCTCCTTCGCAAATATGAGAAGTGCAGCTGGACAGTTT
AGAAGGTGGATCATTGCTTGTGGACTAAATAATCGCAAAAAGGGTGGAAG
AAGGATGTTCTTTTCGAAAGTCTGAAGCATTACGATGCCGTTGAATGTTT
TGTCAACCATTTTCTGCTAGCTTCTGCTCCGAACACTGTTGCGACAAAAT
GAAATTCATTGCTGGTTTTGGTTCGTTCCGCGCAAGTTGAATTGGAAACC
TCCTCAAACAACTGGCTTTCGAAACTGGGAGAATTTCTCTGTCGTACTGC
GTCCGTTGCAAAAACAAGCGCGCGCAGGGTGAGCCAAGATCGGAAACTCA
TTGATCTTGTTTCTCAAAGCGATAAACTCCTTAGGGATGAAGATCTCCGA
AAAGCTTTTTGTGTTTCGAAGTATGCTCTGAAAGATATTTTTGTGACATA
CGCAAAGGATGAAGCAATTCAGATAGGAATGTTTGGGGAGAGACTTCGCA
AGAAAAAGGATCTGATTCACAAATGGTGTCTCAACTTTTTGGCGGCTATG
GTCTTTCGAGGTGGAGGTCAAAGGCCACAGGCAATTGCGAACCTCCAGGT
TCCGTATGAGGCAGATTTTAACAGAGAATTTGAGATTGAGATGGGAAAGT
ATTTTTCGATTCGAACAAAGCTAGAAAAGGTGGACCGTGATCTGCGCTTT
TCTGTGGTTCTAATGCCATTATCGTTGGGAAAGTTTGTAGAGCTTCATGT
GAAAGTTATGCCACCATTTGTACTCCAACAATTTGATTCCATAAGAAGCA
AGCAACCGTGGTCTCTTTTGGTTCATTCTAGGGATGGAGGTCAGCTAAGT
ACGAAGAGCGTGAGAAATTCGATCCGAACATTCATGAAGAACATTGATGG
ACGATTCGAATATGTGACAGGAATGGTAGTTCGATCCAGTTTTGCCACTT
CAATGGTTCATGCGTTCCGCCAGGGAACGGTGGGGAATTGTTTATCAGAA
GCAAGGTATCTCGAATTGCTGGGCAATCGAATGAATACAAAGCTCGAGCA
GCTTAAAGATGCTTATGTGAAAATCAAACGGGTTAACTACGCGGATGGTG
TGCGGCTGGCTATGGAGCACTTTGTTAATGTTATGAAAAAAGGCGATGAT
GAACAGTCTTAG
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Coding sequence (CDS) from alignment at tig00000115_pilon:93553..95264-

>Ggra6930.t1 ID=Ggra6930.t1|Name=Ggra6930.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000115_pilon:93553..95264- (Gracilaria gracilis GNS1m male)
ATGAAAGTGACCAAAAACGGTTCCCATCGTGTCATTGAAAGGGGGTTGAA
AACATCGTTTCGAAAAGTCTCTACCGTGTCTGTGCATGATCCCGAAGTTG
CCGGCGAGCTCAGTGAGCTTCGAACACGAGAAGAGATATCACATCTCGCT
CGAGGCAAATCTATAGCTTCCGAAATTGAAGGCCATTCTAGCGTTGCCAA
AGAACCGAGAAATATGGGAAGCTTACATGAACTTTTGGCGGAGCAGCGCA
AGTTGTTGTGCTCTACTGTACAAAACCGATGCGATCTGTTTAGAGGAAAG
CGTCGCAGATTCGTGAAACCCATTGAAGCCGTGGAAGAGAAGTCTATGGA
GGTTCTCTGGAATGAAATGGTAAACGAACTTCTTCTTCTTGATCCGTCTT
TTTTAACAAGCCCGGATGCCCTGCTGATGGATCGCACTAAAGCAGAACGT
GGAAAGGTGGTTTACATGGGTTTGAAGGTAAATAATGAGAACTGTTCCGA
TATAGAAGAGTTTTTCAGACTGCGTTCTCGAAATAAGATTGTCATGACCA
AACGCGTTGAATTGGAAACCTCCTCAAACAACTGGCTTTCGAAACTGGGA
GAATTTCTCTGTCGTACTGCGTCCGTTGCAAAAACAAGCGCGCGCAGGGT
GAGCCAAGATCGGAAACTCATTGATCTTGTTTCTCAAAGCGATAAACTCC
TTAGGGATGAAGATCTCCGAAAAGCTTTTTGTGTTTCGAAGTATGCTCTG
AAAGATATTTTTGTGACATACGCAAAGGATGAAGCAATTCAGATAGGAAT
GTTTGGGGAGAGACTTCGCAAGAAAAAGGATCTGATTCACAAATGGTGTC
TCAACTTTTTGGCGGCTATGGTCTTTCGAGGTGGAGGTCAAAGGCCACAG
GCAATTGCGAACCTCCAGGTTCCGTATGAGGCAGATTTTAACAGAGAATT
TGAGATTGAGATGGGAAAGTATTTTTCGATTCGAACAAAGCTAGAAAAGG
TGGACCGTGATCTGCGCTTTTCTGTGGTTCTAATGCCATTATCGTTGGGA
AAGTTTGTAGAGCTTCATGTGAAAGTTATGCCACCATTTGTACTCCAACA
ATTTGATTCCATAAGAAGCAAGCAACCGTGGTCTCTTTTGGTTCATTCTA
GGGATGGAGGTCAGCTAAGTACGAAGAGCGTGAGAAATTCGATCCGAACA
TTCATGAAGAACATTGATGGACGATTCGAATATGTGACAGGAATGGTAGT
TCGATCCAGTTTTGCCACTTCAATGGTTCATGCGTTCCGCCAGGGAACGG
TGGGGAATTGTTTATCAGAAGCAAGGTATCTCGAATTGCTGGGCAATCGA
ATGAATACAAAGCTCGAGCAGCTTAAAGATGCTTATGTGAAAATCAAACG
GGTTAACTACGCGGATGGTGTGCGGCTGGCTATGGAGCACTTTGTTAATG
TTATGAAAAAAGGCGATGATGAACAGTCTTAG
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