Ggra6878.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6878.t1
Unique NameGgra6878.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:816604..817497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1265503.KB905171_gene546
PFAMsCu-oxidase_2,Cu-oxidase_3
Max annot lvl1236|Gammaproteobacteria
Evalue1.09e-09
EggNOG OGsCOG2132@1|root,COG2132@2|Bacteria,1R7BF@1224|Proteobacteria,1S0VI@1236|Gammaproteobacteria
DescriptionMulticopper oxidase
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6878Ggra6878Gracilaria gracilis GNS1m malegenetig00000056_pilon 816604..817497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6878.t1Ggra6878.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 816604..817497 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6878.t1.stop1Ggra6878.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 816604..816606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6878.t1.CDS1Ggra6878.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 816604..816785 -
Ggra6878.t1.CDS2Ggra6878.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 816938..817292 -
Ggra6878.t1.CDS3Ggra6878.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 817369..817497 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6878.t1.exon1Ggra6878.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 816604..816785 -
Ggra6878.t1.exon2Ggra6878.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 816938..817292 -
Ggra6878.t1.exon3Ggra6878.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 817369..817497 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6878.t1.intron1Ggra6878.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 816786..816937 -
Ggra6878.t1.intron2Ggra6878.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 817293..817368 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6878.t1.start1Ggra6878.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 817495..817497 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6878.t1 ID=Ggra6878.t1|Name=Ggra6878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MAFQLDSVRRLWKTPASTSPKADRAAGVPRHGGRGGAEVARRLRPAVVYR
WGDLSPCGMPRVLGRELLAVLWVGGENVADEEGDEQEGKFMHSMNGRVSC
ALPQFDLVEGRRARLYLGTVSNDVDVHTSYMHGQVGITAGGEHVDSIRLL
PGSTAALQTLSEGVVWDYAPPGSNRSDRTPFGDDELSSWHRVAENTCRIE
ERSGRRAMGVRGVLERWMRET*
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spliced messenger RNA

>Ggra6878.t1 ID=Ggra6878.t1|Name=Ggra6878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000056_pilon:816604..817497- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCCAGCTTGACAGCGTGCGGCGCCTCTGGAAAACACCCGCTTC
TACGTCGCCAAAGGCAGATCGTGCGGCTGGGGTTCCTCGTCACGGCGGCC
GCGGCGGCGCCGAGGTCGCACGTCGACTCAGGCCTGCTGTTGTGTACCGG
TGGGGCGACCTTTCGCCGTGCGGCATGCCGAGGGTTCTGGGGCGTGAGCT
GCTCGCGGTGTTGTGGGTGGGGGGCGAGAACGTCGCTGATGAGGAAGGCG
ATGAACAGGAAGGGAAGTTCATGCATTCCATGAACGGCCGTGTGTCCTGT
GCGCTTCCGCAATTCGATCTCGTGGAAGGGCGGCGAGCACGGCTTTACCT
CGGCACGGTGAGCAATGATGTTGACGTGCATACCTCCTATATGCACGGGC
AGGTGGGCATCACCGCGGGCGGCGAGCATGTCGATTCGATAAGATTGCTG
CCTGGCTCCACTGCCGCGTTGCAGACCTTGTCGGAGGGTGTTGTGTGGGA
CTATGCGCCGCCTGGAAGCAACCGCTCCGACCGCACGCCGTTCGGTGATG
ACGAGCTCAGCTCATGGCATCGGGTCGCGGAGAATACTTGTCGAATTGAA
GAGCGATCGGGGCGGCGCGCAATGGGCGTGCGCGGCGTGTTGGAGCGGTG
GATGCGCGAGACATGA
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protein sequence of Ggra6878.t1

>Ggra6878.t1 ID=Ggra6878.t1|Name=Ggra6878.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MAFQLDSVRRLWKTPASTSPKADRAAGVPRHGGRGGAEVARRLRPAVVYR
WGDLSPCGMPRVLGRELLAVLWVGGENVADEEGDEQEGKFMHSMNGRVSC
ALPQFDLVEGRRARLYLGTVSNDVDVHTSYMHGQVGITAGGEHVDSIRLL
PGSTAALQTLSEGVVWDYAPPGSNRSDRTPFGDDELSSWHRVAENTCRIE
ERSGRRAMGVRGVLERWMRET*
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mRNA from alignment at tig00000056_pilon:816604..817497-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6878.t1 ID=Ggra6878.t1|Name=Ggra6878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000056_pilon:816604..817497- (Gracilaria gracilis GNS1m male)
ATGGCGTTCCAGCTTGACAGCGTGCGGCGCCTCTGGAAAACACCCGCTTC
TACGTCGCCAAAGGCAGATCGTGCGGCTGGGGTTCCTCGTCACGGCGGCC
GCGGCGGCGCCGAGGTCGCACGTCGACTCGTGCATGCTGTTGTACCGCGT
CACGCTGGGTGGCAGCGGACCGCACAGAAGTTCGGGCGTCTATCGCGGGC
TGTAGAGGCCTGCTGTTGTGTACCGGTGGGGCGACCTTTCGCCGTGCGGC
ATGCCGAGGGTTCTGGGGCGTGAGCTGCTCGCGGTGTTGTGGGTGGGGGG
CGAGAACGTCGCTGATGAGGAAGGCGATGAACAGGAAGGGAAGTTCATGC
ATTCCATGAACGGCCGTGTGTCCTGTGCGCTTCCGCAATTCGATCTCGTG
GAAGGGCGGCGAGCACGGCTTTACCTCGGCACGGTGAGCAATGATGTTGA
CGTGCATACCTCCTATATGCACGGGCAGGTGGGCATCACCGCGGGCGGCG
AGCATGTCGATTCGATAAGATTGCTGCCTGGCTCCACTGCCGCGTTGCAG
ACCTTGTCGGGTAACGTGGACGTTTGGCTGTTTCATTACCATGAGACGAC
CACTTGTACGCCGGCATGCAGGCTTTGCTCCCCGTGCGTCCTGCTGCTGA
AGGGCGGAAGAAGGCGCCGACGTTCTTGCCTTGCAGACAGCGTGTTTACT
TCGTGTAGGCAGAGGGTGTTGTGTGGGACTATGCGCCGCCTGGAAGCAAC
CGCTCCGACCGCACGCCGTTCGGTGATGACGAGCTCAGCTCATGGCATCG
GGTCGCGGAGAATACTTGTCGAATTGAAGAGCGATCGGGGCGGCGCGCAA
TGGGCGTGCGCGGCGTGTTGGAGCGGTGGATGCGCGAGACATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:816604..817497-

>Ggra6878.t1 ID=Ggra6878.t1|Name=Ggra6878.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000056_pilon:816604..817497- (Gracilaria gracilis GNS1m male)
ATGGCGTTCCAGCTTGACAGCGTGCGGCGCCTCTGGAAAACACCCGCTTC
TACGTCGCCAAAGGCAGATCGTGCGGCTGGGGTTCCTCGTCACGGCGGCC
GCGGCGGCGCCGAGGTCGCACGTCGACTCAGGCCTGCTGTTGTGTACCGG
TGGGGCGACCTTTCGCCGTGCGGCATGCCGAGGGTTCTGGGGCGTGAGCT
GCTCGCGGTGTTGTGGGTGGGGGGCGAGAACGTCGCTGATGAGGAAGGCG
ATGAACAGGAAGGGAAGTTCATGCATTCCATGAACGGCCGTGTGTCCTGT
GCGCTTCCGCAATTCGATCTCGTGGAAGGGCGGCGAGCACGGCTTTACCT
CGGCACGGTGAGCAATGATGTTGACGTGCATACCTCCTATATGCACGGGC
AGGTGGGCATCACCGCGGGCGGCGAGCATGTCGATTCGATAAGATTGCTG
CCTGGCTCCACTGCCGCGTTGCAGACCTTGTCGGAGGGTGTTGTGTGGGA
CTATGCGCCGCCTGGAAGCAACCGCTCCGACCGCACGCCGTTCGGTGATG
ACGAGCTCAGCTCATGGCATCGGGTCGCGGAGAATACTTGTCGAATTGAA
GAGCGATCGGGGCGGCGCGCAATGGGCGTGCGCGGCGTGTTGGAGCGGTG
GATGCGCGAGACATGA
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