Ggra6866.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6866.t1
Unique NameGgra6866.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length338
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:714689..715702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706527.1
Preferred nameFES1
PFAMsFes1,HEAT_2,HEAT_EZ
Max annot lvl2759|Eukaryota
GOsGO:0000166,GO:0000774,GO:0002181,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006508,GO:0006511,GO:0006515,GO:0006518,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0010033,GO:0010467,GO:0010498,GO:0017076,GO:0019538,GO:0019941,GO:0022626,GO:0030163,GO:0030234,GO:0030554,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043043,GO:0043161,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0050790,GO:0050896,GO:0051603,GO:0051716,GO:0051788,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0070887,GO:0071218,GO:0071310,GO:0071629,GO:0071704,GO:0097159,GO:0098772,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue1.55e-26
EggNOG OGsCOG0197@1|root,KOG2160@2759|Eukaryota
Descriptionadenyl-nucleotide exchange factor activity
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6866Ggra6866Gracilaria gracilis GNS1m malegenetig00000056_pilon 714689..715702 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6866.t1.start1Ggra6866.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 714689..714691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6866.t1.CDS1Ggra6866.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 714689..715702 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6866.t1.exon1Ggra6866.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 714689..715702 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6866.t1.stop1Ggra6866.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 715700..715702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6866.t1Ggra6866.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 714689..715702 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6866.t1 ID=Ggra6866.t1|Name=Ggra6866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=338bp
MSEPKSSAAHDAGVASKAMEALQKEKQRKESEKVLSGENISSLNQLLQWS
TAHSEDPNTTNTEGRRKAAGKTEEQLENDREWLDKAFPDPFAEVNQLVRM
LREGDLEEDKTVQVLEGLQEYFMDLNYAINIEKIGALEPIMQHLIGDSPA
VRAAAFWVLGSAMRDLQQVKDLVMEKERYKALAAGLTDANGSVRAKAVMA
SSALLRHSSEDVQNKFKEAGGMSSLRFLLHDRIPQVRRRARFFLQHARET
GNGGFVNDLLDDQPSIAAFTSSVEEIDADDVADVEAAVGAIDVLVETDKM
GLLRLAPELPGIIDALYEKCSDADLCELLQGLKTRLD*
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spliced messenger RNA

>Ggra6866.t1 ID=Ggra6866.t1|Name=Ggra6866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000056_pilon:714689..715702+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGAACCAAAGTCCTCTGCAGCGCATGACGCCGGGGTTGCTTCAAA
AGCAATGGAAGCTCTTCAAAAGGAGAAGCAAAGGAAAGAGTCTGAAAAAG
TACTAAGCGGTGAAAACATAAGTTCCTTGAATCAGCTCTTACAATGGAGC
ACGGCTCATAGCGAAGACCCGAATACCACGAACACCGAAGGTCGCCGCAA
AGCTGCAGGAAAGACTGAAGAGCAGCTAGAAAACGACCGTGAATGGCTCG
ACAAGGCTTTCCCTGATCCGTTTGCTGAAGTTAACCAACTGGTTCGAATG
CTCCGTGAGGGTGACCTTGAAGAGGATAAGACGGTACAAGTGCTAGAGGG
GTTACAAGAGTACTTTATGGATCTCAACTATGCGATCAACATCGAAAAGA
TAGGCGCGCTTGAACCCATTATGCAGCACCTTATCGGAGACTCACCAGCT
GTGAGGGCAGCTGCTTTTTGGGTGCTAGGATCTGCGATGCGTGACCTGCA
ACAAGTCAAGGATCTAGTCATGGAAAAGGAAAGATACAAGGCTTTGGCGG
CAGGTCTGACAGACGCAAATGGCTCAGTGCGAGCAAAAGCGGTAATGGCG
TCCTCGGCTCTTTTGAGACATTCGAGTGAAGACGTGCAGAATAAGTTCAA
GGAAGCCGGAGGTATGTCAAGTTTACGGTTTCTTTTGCACGACAGAATCC
CTCAGGTTAGGCGCCGAGCAAGATTCTTTCTCCAACATGCAAGAGAAACT
GGGAATGGAGGATTTGTGAATGATTTGCTGGATGACCAACCAAGCATTGC
TGCGTTTACAAGTTCTGTTGAAGAGATTGATGCTGACGATGTCGCCGATG
TGGAAGCTGCAGTTGGGGCAATAGATGTACTGGTGGAGACAGACAAGATG
GGGTTGTTGCGGTTAGCCCCGGAGTTACCTGGGATTATCGACGCGCTATA
CGAGAAGTGTAGTGATGCCGACCTTTGCGAACTCCTTCAAGGATTGAAGA
CTCGCTTAGATTAA
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protein sequence of Ggra6866.t1

>Ggra6866.t1 ID=Ggra6866.t1|Name=Ggra6866.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=338bp
MSEPKSSAAHDAGVASKAMEALQKEKQRKESEKVLSGENISSLNQLLQWS
TAHSEDPNTTNTEGRRKAAGKTEEQLENDREWLDKAFPDPFAEVNQLVRM
LREGDLEEDKTVQVLEGLQEYFMDLNYAINIEKIGALEPIMQHLIGDSPA
VRAAAFWVLGSAMRDLQQVKDLVMEKERYKALAAGLTDANGSVRAKAVMA
SSALLRHSSEDVQNKFKEAGGMSSLRFLLHDRIPQVRRRARFFLQHARET
GNGGFVNDLLDDQPSIAAFTSSVEEIDADDVADVEAAVGAIDVLVETDKM
GLLRLAPELPGIIDALYEKCSDADLCELLQGLKTRLD*
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mRNA from alignment at tig00000056_pilon:714689..715702+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6866.t1 ID=Ggra6866.t1|Name=Ggra6866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000056_pilon:714689..715702+ (Gracilaria gracilis GNS1m male)
ATGAGTGAACCAAAGTCCTCTGCAGCGCATGACGCCGGGGTTGCTTCAAA
AGCAATGGAAGCTCTTCAAAAGGAGAAGCAAAGGAAAGAGTCTGAAAAAG
TACTAAGCGGTGAAAACATAAGTTCCTTGAATCAGCTCTTACAATGGAGC
ACGGCTCATAGCGAAGACCCGAATACCACGAACACCGAAGGTCGCCGCAA
AGCTGCAGGAAAGACTGAAGAGCAGCTAGAAAACGACCGTGAATGGCTCG
ACAAGGCTTTCCCTGATCCGTTTGCTGAAGTTAACCAACTGGTTCGAATG
CTCCGTGAGGGTGACCTTGAAGAGGATAAGACGGTACAAGTGCTAGAGGG
GTTACAAGAGTACTTTATGGATCTCAACTATGCGATCAACATCGAAAAGA
TAGGCGCGCTTGAACCCATTATGCAGCACCTTATCGGAGACTCACCAGCT
GTGAGGGCAGCTGCTTTTTGGGTGCTAGGATCTGCGATGCGTGACCTGCA
ACAAGTCAAGGATCTAGTCATGGAAAAGGAAAGATACAAGGCTTTGGCGG
CAGGTCTGACAGACGCAAATGGCTCAGTGCGAGCAAAAGCGGTAATGGCG
TCCTCGGCTCTTTTGAGACATTCGAGTGAAGACGTGCAGAATAAGTTCAA
GGAAGCCGGAGGTATGTCAAGTTTACGGTTTCTTTTGCACGACAGAATCC
CTCAGGTTAGGCGCCGAGCAAGATTCTTTCTCCAACATGCAAGAGAAACT
GGGAATGGAGGATTTGTGAATGATTTGCTGGATGACCAACCAAGCATTGC
TGCGTTTACAAGTTCTGTTGAAGAGATTGATGCTGACGATGTCGCCGATG
TGGAAGCTGCAGTTGGGGCAATAGATGTACTGGTGGAGACAGACAAGATG
GGGTTGTTGCGGTTAGCCCCGGAGTTACCTGGGATTATCGACGCGCTATA
CGAGAAGTGTAGTGATGCCGACCTTTGCGAACTCCTTCAAGGATTGAAGA
CTCGCTTAGATTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:714689..715702+

>Ggra6866.t1 ID=Ggra6866.t1|Name=Ggra6866.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1014bp|location=Sequence derived from alignment at tig00000056_pilon:714689..715702+ (Gracilaria gracilis GNS1m male)
ATGAGTGAACCAAAGTCCTCTGCAGCGCATGACGCCGGGGTTGCTTCAAA
AGCAATGGAAGCTCTTCAAAAGGAGAAGCAAAGGAAAGAGTCTGAAAAAG
TACTAAGCGGTGAAAACATAAGTTCCTTGAATCAGCTCTTACAATGGAGC
ACGGCTCATAGCGAAGACCCGAATACCACGAACACCGAAGGTCGCCGCAA
AGCTGCAGGAAAGACTGAAGAGCAGCTAGAAAACGACCGTGAATGGCTCG
ACAAGGCTTTCCCTGATCCGTTTGCTGAAGTTAACCAACTGGTTCGAATG
CTCCGTGAGGGTGACCTTGAAGAGGATAAGACGGTACAAGTGCTAGAGGG
GTTACAAGAGTACTTTATGGATCTCAACTATGCGATCAACATCGAAAAGA
TAGGCGCGCTTGAACCCATTATGCAGCACCTTATCGGAGACTCACCAGCT
GTGAGGGCAGCTGCTTTTTGGGTGCTAGGATCTGCGATGCGTGACCTGCA
ACAAGTCAAGGATCTAGTCATGGAAAAGGAAAGATACAAGGCTTTGGCGG
CAGGTCTGACAGACGCAAATGGCTCAGTGCGAGCAAAAGCGGTAATGGCG
TCCTCGGCTCTTTTGAGACATTCGAGTGAAGACGTGCAGAATAAGTTCAA
GGAAGCCGGAGGTATGTCAAGTTTACGGTTTCTTTTGCACGACAGAATCC
CTCAGGTTAGGCGCCGAGCAAGATTCTTTCTCCAACATGCAAGAGAAACT
GGGAATGGAGGATTTGTGAATGATTTGCTGGATGACCAACCAAGCATTGC
TGCGTTTACAAGTTCTGTTGAAGAGATTGATGCTGACGATGTCGCCGATG
TGGAAGCTGCAGTTGGGGCAATAGATGTACTGGTGGAGACAGACAAGATG
GGGTTGTTGCGGTTAGCCCCGGAGTTACCTGGGATTATCGACGCGCTATA
CGAGAAGTGTAGTGATGCCGACCTTTGCGAACTCCTTCAAGGATTGAAGA
CTCGCTTAGATTAA
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