Ggra6853.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6853.t1
Unique NameGgra6853.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length259
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:673201..673977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6853Ggra6853Gracilaria gracilis GNS1m malegenetig00000056_pilon 673201..673977 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6853.t1.start1Ggra6853.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 673201..673203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6853.t1.CDS1Ggra6853.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 673201..673977 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6853.t1.exon1Ggra6853.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 673201..673977 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6853.t1.stop1Ggra6853.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 673975..673977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6853.t1Ggra6853.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 673201..673977 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6853.t1 ID=Ggra6853.t1|Name=Ggra6853.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=259bp
MNHSHPNCLACQQPTSPSDTTRLAPCHCFPFHSHCISNHELRTRQASKTA
ALCCPICRTRVTSILQSRPYSPPTSRPPFTHSSIAHSHRTHPAQPPPTSP
YGPSYIPPPPPLADYSLPPPPHPFLYAMQPTAPPPTPPPSKSMFISEPAL
PPRSDKIRVYSDMQLPPNASLWHDRAYATDSDSCRFQFAGSMNISATGVH
SLSVNDRARPDGKQHTPYGQHAHSQHARKKRRRKSRHIEVYWPRSIVVLV
KRIKRMVA*
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spliced messenger RNA

>Ggra6853.t1 ID=Ggra6853.t1|Name=Ggra6853.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000056_pilon:673201..673977+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCACTCACATCCTAACTGCCTGGCGTGCCAACAACCAACCTCCCC
CTCTGACACCACTCGACTGGCGCCCTGTCACTGCTTCCCATTCCACTCTC
ATTGCATCTCCAACCACGAACTGCGCACCCGTCAAGCCTCCAAAACCGCC
GCACTCTGCTGTCCCATCTGCCGCACCCGCGTCACCTCCATCCTGCAATC
GCGCCCATACTCCCCACCCACCTCCAGACCGCCGTTCACACATTCCTCCA
TCGCACACTCTCACCGAACACACCCTGCACAACCGCCGCCCACCTCGCCT
TACGGCCCGTCGTACATTCCACCGCCTCCGCCGCTCGCCGACTACTCGCT
ACCGCCACCACCGCACCCCTTTTTGTACGCTATGCAACCGACAGCTCCGC
CGCCTACCCCGCCTCCCTCCAAGTCCATGTTCATCTCGGAGCCTGCTTTG
CCGCCGCGCTCGGACAAGATCCGCGTGTACTCGGACATGCAACTGCCGCC
AAACGCCTCGCTTTGGCACGATCGTGCGTATGCAACCGACTCGGACAGTT
GTCGATTTCAGTTTGCTGGCAGCATGAATATTAGCGCCACCGGAGTGCAC
TCGCTTTCGGTCAACGATCGTGCACGGCCTGACGGGAAGCAGCACACGCC
GTATGGGCAACATGCACACTCTCAGCACGCACGTAAGAAAAGGAGAAGGA
AGTCCAGGCATATTGAAGTTTATTGGCCACGCTCCATTGTTGTGCTTGTG
AAGAGAATCAAGCGAATGGTGGCATAG
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protein sequence of Ggra6853.t1

>Ggra6853.t1 ID=Ggra6853.t1|Name=Ggra6853.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=259bp
MNHSHPNCLACQQPTSPSDTTRLAPCHCFPFHSHCISNHELRTRQASKTA
ALCCPICRTRVTSILQSRPYSPPTSRPPFTHSSIAHSHRTHPAQPPPTSP
YGPSYIPPPPPLADYSLPPPPHPFLYAMQPTAPPPTPPPSKSMFISEPAL
PPRSDKIRVYSDMQLPPNASLWHDRAYATDSDSCRFQFAGSMNISATGVH
SLSVNDRARPDGKQHTPYGQHAHSQHARKKRRRKSRHIEVYWPRSIVVLV
KRIKRMVA*
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mRNA from alignment at tig00000056_pilon:673201..673977+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6853.t1 ID=Ggra6853.t1|Name=Ggra6853.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000056_pilon:673201..673977+ (Gracilaria gracilis GNS1m male)
ATGAATCACTCACATCCTAACTGCCTGGCGTGCCAACAACCAACCTCCCC
CTCTGACACCACTCGACTGGCGCCCTGTCACTGCTTCCCATTCCACTCTC
ATTGCATCTCCAACCACGAACTGCGCACCCGTCAAGCCTCCAAAACCGCC
GCACTCTGCTGTCCCATCTGCCGCACCCGCGTCACCTCCATCCTGCAATC
GCGCCCATACTCCCCACCCACCTCCAGACCGCCGTTCACACATTCCTCCA
TCGCACACTCTCACCGAACACACCCTGCACAACCGCCGCCCACCTCGCCT
TACGGCCCGTCGTACATTCCACCGCCTCCGCCGCTCGCCGACTACTCGCT
ACCGCCACCACCGCACCCCTTTTTGTACGCTATGCAACCGACAGCTCCGC
CGCCTACCCCGCCTCCCTCCAAGTCCATGTTCATCTCGGAGCCTGCTTTG
CCGCCGCGCTCGGACAAGATCCGCGTGTACTCGGACATGCAACTGCCGCC
AAACGCCTCGCTTTGGCACGATCGTGCGTATGCAACCGACTCGGACAGTT
GTCGATTTCAGTTTGCTGGCAGCATGAATATTAGCGCCACCGGAGTGCAC
TCGCTTTCGGTCAACGATCGTGCACGGCCTGACGGGAAGCAGCACACGCC
GTATGGGCAACATGCACACTCTCAGCACGCACGTAAGAAAAGGAGAAGGA
AGTCCAGGCATATTGAAGTTTATTGGCCACGCTCCATTGTTGTGCTTGTG
AAGAGAATCAAGCGAATGGTGGCATAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:673201..673977+

>Ggra6853.t1 ID=Ggra6853.t1|Name=Ggra6853.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=777bp|location=Sequence derived from alignment at tig00000056_pilon:673201..673977+ (Gracilaria gracilis GNS1m male)
ATGAATCACTCACATCCTAACTGCCTGGCGTGCCAACAACCAACCTCCCC
CTCTGACACCACTCGACTGGCGCCCTGTCACTGCTTCCCATTCCACTCTC
ATTGCATCTCCAACCACGAACTGCGCACCCGTCAAGCCTCCAAAACCGCC
GCACTCTGCTGTCCCATCTGCCGCACCCGCGTCACCTCCATCCTGCAATC
GCGCCCATACTCCCCACCCACCTCCAGACCGCCGTTCACACATTCCTCCA
TCGCACACTCTCACCGAACACACCCTGCACAACCGCCGCCCACCTCGCCT
TACGGCCCGTCGTACATTCCACCGCCTCCGCCGCTCGCCGACTACTCGCT
ACCGCCACCACCGCACCCCTTTTTGTACGCTATGCAACCGACAGCTCCGC
CGCCTACCCCGCCTCCCTCCAAGTCCATGTTCATCTCGGAGCCTGCTTTG
CCGCCGCGCTCGGACAAGATCCGCGTGTACTCGGACATGCAACTGCCGCC
AAACGCCTCGCTTTGGCACGATCGTGCGTATGCAACCGACTCGGACAGTT
GTCGATTTCAGTTTGCTGGCAGCATGAATATTAGCGCCACCGGAGTGCAC
TCGCTTTCGGTCAACGATCGTGCACGGCCTGACGGGAAGCAGCACACGCC
GTATGGGCAACATGCACACTCTCAGCACGCACGTAAGAAAAGGAGAAGGA
AGTCCAGGCATATTGAAGTTTATTGGCCACGCTCCATTGTTGTGCTTGTG
AAGAGAATCAAGCGAATGGTGGCATAG
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