Ggra6849.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6849.t1
Unique NameGgra6849.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:666807..668048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705093.1
Preferred nameMGD1
PFAMsGlyco_tran_28_C,MGDG_synth
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K03715
KEGG ReactionR02691
KEGG Pathwayko00561,ko01100,map00561,map01100
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006643,GO:0006664,GO:0006950,GO:0006996,GO:0007154,GO:0007275,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0008610,GO:0009058,GO:0009247,GO:0009267,GO:0009507,GO:0009526,GO:0009527,GO:0009528,GO:0009536,GO:0009605,GO:0009657,GO:0009668,GO:0009706,GO:0009707,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0009991,GO:0010027,GO:0010154,GO:0016020,GO:0016036,GO:0016043,GO:0016740,GO:0016757,GO:0016758,GO:0019374,GO:0019752,GO:0019866,GO:0019867,GO:0022414,GO:0031090,GO:0031667,GO:0031668,GO:0031669,GO:0031967,GO:0031968,GO:0031969,GO:0031975,GO:0032501,GO:0032502,GO:0032787,GO:0033554,GO:0035250,GO:0042170,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046509,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0061024,GO:0061458,GO:0071496,GO:0071704,GO:0071840,GO:0098588,GO:0098805,GO:1901135,GO:1901137,GO:1901576,GO:1903509
Evalue1.91e-140
EggNOG OGsCOG0707@1|root,2QPXV@2759|Eukaryota
EC2.4.1.46
Description1,2-diacylglycerol 3-beta-galactosyltransferase activity
COG categoryM
CAZyGT28
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6849Ggra6849Gracilaria gracilis GNS1m malegenetig00000056_pilon 666807..668048 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6849.t1.stop1Ggra6849.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 666807..666809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6849.t1.CDS1Ggra6849.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 666807..668048 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6849.t1.exon1Ggra6849.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 666807..668048 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6849.t1.start1Ggra6849.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 668046..668048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6849.t1Ggra6849.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 666807..668048 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6849.t1 ID=Ggra6849.t1|Name=Ggra6849.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MDAACQHELSAGASRERAAPSASRVRIMFLISDTGGGHRASAQALSAAFE
ELYPGRIECTIVDFWTEIVGQPFDNFPGGYSFLAKNPPLWRAAWQYGRFP
LTRRLTEEFANAVGNDNFRRAMRSYEPHLIVSVHPLTQFIPLRVLRTMSS
RPPFVTVCSDLGGAHPTWFHREVDLCFVPTDRVRRIALRCGLKHQQLRQY
GLPVRSDFWRDAQEKHALRMQLRLRRDVPTVLIVGGGDGVGGVGRIAVSI
ADKLQRRLGRDGAQLVVVCGKNERLKQQLSSRAWPLTVHVKGFVHNMSEW
MAASDVLVSKAGPGTIAEALIRGLPIVLSGFLPGQEAPNVQYVTETGVGT
FCRQPDIIGNIVADWVCNPRLLEERSRRAKRLGRPNATHDIVREIAPLVQ
LSGARSQVGGAAL*
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spliced messenger RNA

>Ggra6849.t1 ID=Ggra6849.t1|Name=Ggra6849.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000056_pilon:666807..668048- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCGGCGTGCCAGCACGAGCTGTCGGCCGGCGCCAGCCGCGAGCG
CGCCGCGCCTTCTGCGTCGCGCGTGCGCATCATGTTTCTGATTTCGGACA
CGGGCGGCGGCCATCGCGCGTCGGCGCAGGCGCTTAGCGCCGCGTTCGAG
GAGCTGTATCCCGGCCGTATCGAGTGCACCATCGTGGACTTTTGGACCGA
GATCGTCGGACAGCCGTTTGACAACTTTCCCGGCGGCTACTCGTTCCTGG
CCAAGAACCCGCCGCTGTGGCGCGCCGCGTGGCAGTACGGACGCTTCCCG
CTCACGCGCCGGCTGACGGAGGAGTTTGCCAACGCGGTGGGCAACGACAA
CTTTCGACGCGCCATGCGCAGCTATGAGCCGCACCTCATTGTGAGCGTGC
ATCCGCTCACGCAGTTCATCCCGCTGCGCGTGTTGCGCACCATGAGCTCG
CGTCCGCCGTTCGTGACCGTGTGCTCGGACCTGGGCGGCGCGCATCCCAC
GTGGTTCCACCGCGAGGTGGACCTGTGTTTCGTGCCCACCGACCGCGTGC
GGCGCATCGCGCTGCGCTGCGGGCTCAAGCACCAGCAGCTGAGGCAGTAT
GGGCTGCCGGTGCGCTCGGACTTTTGGCGCGACGCGCAGGAGAAGCACGC
GCTTCGAATGCAGCTGCGCCTGCGGCGCGACGTGCCCACCGTGCTCATTG
TGGGCGGCGGCGATGGCGTGGGCGGCGTGGGGCGCATTGCAGTGTCCATT
GCGGACAAGCTGCAGCGACGGCTGGGGCGCGACGGCGCGCAGTTGGTGGT
GGTATGCGGCAAGAACGAGCGCTTGAAGCAACAGCTGTCGAGCCGCGCGT
GGCCGCTGACAGTTCACGTCAAGGGCTTTGTGCACAACATGTCGGAGTGG
ATGGCGGCGTCGGACGTGCTGGTGAGCAAGGCGGGGCCTGGCACGATTGC
CGAGGCGCTCATCCGCGGGCTGCCCATCGTGCTGTCGGGCTTCTTGCCGG
GGCAGGAGGCGCCCAACGTGCAGTACGTGACGGAGACGGGGGTGGGCACG
TTTTGTAGGCAGCCGGACATCATCGGCAACATTGTGGCCGACTGGGTGTG
TAACCCGCGGCTGCTGGAGGAGCGCTCCAGACGCGCGAAGCGGCTGGGGC
GACCGAACGCTACGCACGACATTGTGCGCGAGATTGCGCCGCTGGTGCAG
CTGAGCGGCGCGCGCAGCCAAGTTGGCGGCGCGGCGCTGTAA
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protein sequence of Ggra6849.t1

>Ggra6849.t1 ID=Ggra6849.t1|Name=Ggra6849.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MDAACQHELSAGASRERAAPSASRVRIMFLISDTGGGHRASAQALSAAFE
ELYPGRIECTIVDFWTEIVGQPFDNFPGGYSFLAKNPPLWRAAWQYGRFP
LTRRLTEEFANAVGNDNFRRAMRSYEPHLIVSVHPLTQFIPLRVLRTMSS
RPPFVTVCSDLGGAHPTWFHREVDLCFVPTDRVRRIALRCGLKHQQLRQY
GLPVRSDFWRDAQEKHALRMQLRLRRDVPTVLIVGGGDGVGGVGRIAVSI
ADKLQRRLGRDGAQLVVVCGKNERLKQQLSSRAWPLTVHVKGFVHNMSEW
MAASDVLVSKAGPGTIAEALIRGLPIVLSGFLPGQEAPNVQYVTETGVGT
FCRQPDIIGNIVADWVCNPRLLEERSRRAKRLGRPNATHDIVREIAPLVQ
LSGARSQVGGAAL*
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mRNA from alignment at tig00000056_pilon:666807..668048-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6849.t1 ID=Ggra6849.t1|Name=Ggra6849.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000056_pilon:666807..668048- (Gracilaria gracilis GNS1m male)
ATGGACGCGGCGTGCCAGCACGAGCTGTCGGCCGGCGCCAGCCGCGAGCG
CGCCGCGCCTTCTGCGTCGCGCGTGCGCATCATGTTTCTGATTTCGGACA
CGGGCGGCGGCCATCGCGCGTCGGCGCAGGCGCTTAGCGCCGCGTTCGAG
GAGCTGTATCCCGGCCGTATCGAGTGCACCATCGTGGACTTTTGGACCGA
GATCGTCGGACAGCCGTTTGACAACTTTCCCGGCGGCTACTCGTTCCTGG
CCAAGAACCCGCCGCTGTGGCGCGCCGCGTGGCAGTACGGACGCTTCCCG
CTCACGCGCCGGCTGACGGAGGAGTTTGCCAACGCGGTGGGCAACGACAA
CTTTCGACGCGCCATGCGCAGCTATGAGCCGCACCTCATTGTGAGCGTGC
ATCCGCTCACGCAGTTCATCCCGCTGCGCGTGTTGCGCACCATGAGCTCG
CGTCCGCCGTTCGTGACCGTGTGCTCGGACCTGGGCGGCGCGCATCCCAC
GTGGTTCCACCGCGAGGTGGACCTGTGTTTCGTGCCCACCGACCGCGTGC
GGCGCATCGCGCTGCGCTGCGGGCTCAAGCACCAGCAGCTGAGGCAGTAT
GGGCTGCCGGTGCGCTCGGACTTTTGGCGCGACGCGCAGGAGAAGCACGC
GCTTCGAATGCAGCTGCGCCTGCGGCGCGACGTGCCCACCGTGCTCATTG
TGGGCGGCGGCGATGGCGTGGGCGGCGTGGGGCGCATTGCAGTGTCCATT
GCGGACAAGCTGCAGCGACGGCTGGGGCGCGACGGCGCGCAGTTGGTGGT
GGTATGCGGCAAGAACGAGCGCTTGAAGCAACAGCTGTCGAGCCGCGCGT
GGCCGCTGACAGTTCACGTCAAGGGCTTTGTGCACAACATGTCGGAGTGG
ATGGCGGCGTCGGACGTGCTGGTGAGCAAGGCGGGGCCTGGCACGATTGC
CGAGGCGCTCATCCGCGGGCTGCCCATCGTGCTGTCGGGCTTCTTGCCGG
GGCAGGAGGCGCCCAACGTGCAGTACGTGACGGAGACGGGGGTGGGCACG
TTTTGTAGGCAGCCGGACATCATCGGCAACATTGTGGCCGACTGGGTGTG
TAACCCGCGGCTGCTGGAGGAGCGCTCCAGACGCGCGAAGCGGCTGGGGC
GACCGAACGCTACGCACGACATTGTGCGCGAGATTGCGCCGCTGGTGCAG
CTGAGCGGCGCGCGCAGCCAAGTTGGCGGCGCGGCGCTGTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:666807..668048-

>Ggra6849.t1 ID=Ggra6849.t1|Name=Ggra6849.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000056_pilon:666807..668048- (Gracilaria gracilis GNS1m male)
ATGGACGCGGCGTGCCAGCACGAGCTGTCGGCCGGCGCCAGCCGCGAGCG
CGCCGCGCCTTCTGCGTCGCGCGTGCGCATCATGTTTCTGATTTCGGACA
CGGGCGGCGGCCATCGCGCGTCGGCGCAGGCGCTTAGCGCCGCGTTCGAG
GAGCTGTATCCCGGCCGTATCGAGTGCACCATCGTGGACTTTTGGACCGA
GATCGTCGGACAGCCGTTTGACAACTTTCCCGGCGGCTACTCGTTCCTGG
CCAAGAACCCGCCGCTGTGGCGCGCCGCGTGGCAGTACGGACGCTTCCCG
CTCACGCGCCGGCTGACGGAGGAGTTTGCCAACGCGGTGGGCAACGACAA
CTTTCGACGCGCCATGCGCAGCTATGAGCCGCACCTCATTGTGAGCGTGC
ATCCGCTCACGCAGTTCATCCCGCTGCGCGTGTTGCGCACCATGAGCTCG
CGTCCGCCGTTCGTGACCGTGTGCTCGGACCTGGGCGGCGCGCATCCCAC
GTGGTTCCACCGCGAGGTGGACCTGTGTTTCGTGCCCACCGACCGCGTGC
GGCGCATCGCGCTGCGCTGCGGGCTCAAGCACCAGCAGCTGAGGCAGTAT
GGGCTGCCGGTGCGCTCGGACTTTTGGCGCGACGCGCAGGAGAAGCACGC
GCTTCGAATGCAGCTGCGCCTGCGGCGCGACGTGCCCACCGTGCTCATTG
TGGGCGGCGGCGATGGCGTGGGCGGCGTGGGGCGCATTGCAGTGTCCATT
GCGGACAAGCTGCAGCGACGGCTGGGGCGCGACGGCGCGCAGTTGGTGGT
GGTATGCGGCAAGAACGAGCGCTTGAAGCAACAGCTGTCGAGCCGCGCGT
GGCCGCTGACAGTTCACGTCAAGGGCTTTGTGCACAACATGTCGGAGTGG
ATGGCGGCGTCGGACGTGCTGGTGAGCAAGGCGGGGCCTGGCACGATTGC
CGAGGCGCTCATCCGCGGGCTGCCCATCGTGCTGTCGGGCTTCTTGCCGG
GGCAGGAGGCGCCCAACGTGCAGTACGTGACGGAGACGGGGGTGGGCACG
TTTTGTAGGCAGCCGGACATCATCGGCAACATTGTGGCCGACTGGGTGTG
TAACCCGCGGCTGCTGGAGGAGCGCTCCAGACGCGCGAAGCGGCTGGGGC
GACCGAACGCTACGCACGACATTGTGCGCGAGATTGCGCCGCTGGTGCAG
CTGAGCGGCGCGCGCAGCCAAGTTGGCGGCGCGGCGCTGTAA
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