Ggra6846.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6846.t1
Unique NameGgra6846.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:660959..661609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD20910
Max annot lvl2903.EOD20910|-
Evalue1.11e-33
EggNOG OGs2EXBI@1|root,2SZ19@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6846Ggra6846Gracilaria gracilis GNS1m malegenetig00000056_pilon 660959..661609 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6846.t1.stop1Ggra6846.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 660959..660961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6846.t1.CDS1Ggra6846.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 660959..661609 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6846.t1.exon1Ggra6846.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 660959..661609 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6846.t1.start1Ggra6846.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 661607..661609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6846.t1Ggra6846.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 660959..661609 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6846.t1 ID=Ggra6846.t1|Name=Ggra6846.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MPHLFSEDGEDYYLYTRHFSQLKRPGIYVDVAPKEPIQRSNTYFFDRCMG
WRGICVEANSQYYERLHTQRSCHLVPTCVSDEDDKNVQFGMLGANGGILE
TYTGDARVLEGVAEELTCTTLESVFNRLGVSHVDYLNLDVEGHEMEVLEG
VEWGKVTIDIITVEFDKRTRKAVHTFLLQRGYHAHVPGRHAVHRMKPFRM
RKVVYVRHGVVLGFPE*
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spliced messenger RNA

>Ggra6846.t1 ID=Ggra6846.t1|Name=Ggra6846.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000056_pilon:660959..661609- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCACCTATTTTCCGAAGACGGCGAAGACTACTACTTATATACTCG
TCATTTTTCGCAGCTGAAACGGCCAGGAATCTACGTTGACGTCGCACCCA
AGGAACCAATCCAGAGGTCAAACACGTACTTCTTTGATCGATGCATGGGA
TGGCGAGGGATTTGTGTCGAGGCCAACTCACAATATTACGAACGATTGCA
TACACAGAGATCGTGTCACCTTGTTCCAACTTGTGTCAGTGATGAGGACG
ACAAAAACGTGCAATTCGGAATGCTGGGCGCCAATGGTGGAATCCTTGAA
ACATATACAGGTGATGCTCGGGTTTTGGAAGGTGTCGCGGAGGAGCTTAC
GTGCACTACGCTTGAGTCCGTCTTCAACCGACTTGGAGTTTCTCATGTCG
ATTACTTAAACCTTGACGTCGAAGGACATGAAATGGAAGTTCTTGAAGGT
GTGGAATGGGGAAAGGTGACGATAGATATAATAACTGTAGAGTTTGATAA
GCGCACAAGAAAAGCAGTTCACACTTTCCTTCTACAAAGAGGATATCATG
CCCATGTGCCGGGAAGGCATGCTGTTCATCGAATGAAGCCGTTTCGAATG
AGGAAGGTTGTATATGTACGCCACGGTGTCGTCCTAGGTTTCCCAGAATG
A
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protein sequence of Ggra6846.t1

>Ggra6846.t1 ID=Ggra6846.t1|Name=Ggra6846.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MPHLFSEDGEDYYLYTRHFSQLKRPGIYVDVAPKEPIQRSNTYFFDRCMG
WRGICVEANSQYYERLHTQRSCHLVPTCVSDEDDKNVQFGMLGANGGILE
TYTGDARVLEGVAEELTCTTLESVFNRLGVSHVDYLNLDVEGHEMEVLEG
VEWGKVTIDIITVEFDKRTRKAVHTFLLQRGYHAHVPGRHAVHRMKPFRM
RKVVYVRHGVVLGFPE*
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mRNA from alignment at tig00000056_pilon:660959..661609-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6846.t1 ID=Ggra6846.t1|Name=Ggra6846.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000056_pilon:660959..661609- (Gracilaria gracilis GNS1m male)
ATGCCTCACCTATTTTCCGAAGACGGCGAAGACTACTACTTATATACTCG
TCATTTTTCGCAGCTGAAACGGCCAGGAATCTACGTTGACGTCGCACCCA
AGGAACCAATCCAGAGGTCAAACACGTACTTCTTTGATCGATGCATGGGA
TGGCGAGGGATTTGTGTCGAGGCCAACTCACAATATTACGAACGATTGCA
TACACAGAGATCGTGTCACCTTGTTCCAACTTGTGTCAGTGATGAGGACG
ACAAAAACGTGCAATTCGGAATGCTGGGCGCCAATGGTGGAATCCTTGAA
ACATATACAGGTGATGCTCGGGTTTTGGAAGGTGTCGCGGAGGAGCTTAC
GTGCACTACGCTTGAGTCCGTCTTCAACCGACTTGGAGTTTCTCATGTCG
ATTACTTAAACCTTGACGTCGAAGGACATGAAATGGAAGTTCTTGAAGGT
GTGGAATGGGGAAAGGTGACGATAGATATAATAACTGTAGAGTTTGATAA
GCGCACAAGAAAAGCAGTTCACACTTTCCTTCTACAAAGAGGATATCATG
CCCATGTGCCGGGAAGGCATGCTGTTCATCGAATGAAGCCGTTTCGAATG
AGGAAGGTTGTATATGTACGCCACGGTGTCGTCCTAGGTTTCCCAGAATG
A
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Coding sequence (CDS) from alignment at tig00000056_pilon:660959..661609-

>Ggra6846.t1 ID=Ggra6846.t1|Name=Ggra6846.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000056_pilon:660959..661609- (Gracilaria gracilis GNS1m male)
ATGCCTCACCTATTTTCCGAAGACGGCGAAGACTACTACTTATATACTCG
TCATTTTTCGCAGCTGAAACGGCCAGGAATCTACGTTGACGTCGCACCCA
AGGAACCAATCCAGAGGTCAAACACGTACTTCTTTGATCGATGCATGGGA
TGGCGAGGGATTTGTGTCGAGGCCAACTCACAATATTACGAACGATTGCA
TACACAGAGATCGTGTCACCTTGTTCCAACTTGTGTCAGTGATGAGGACG
ACAAAAACGTGCAATTCGGAATGCTGGGCGCCAATGGTGGAATCCTTGAA
ACATATACAGGTGATGCTCGGGTTTTGGAAGGTGTCGCGGAGGAGCTTAC
GTGCACTACGCTTGAGTCCGTCTTCAACCGACTTGGAGTTTCTCATGTCG
ATTACTTAAACCTTGACGTCGAAGGACATGAAATGGAAGTTCTTGAAGGT
GTGGAATGGGGAAAGGTGACGATAGATATAATAACTGTAGAGTTTGATAA
GCGCACAAGAAAAGCAGTTCACACTTTCCTTCTACAAAGAGGATATCATG
CCCATGTGCCGGGAAGGCATGCTGTTCATCGAATGAAGCCGTTTCGAATG
AGGAAGGTTGTATATGTACGCCACGGTGTCGTCCTAGGTTTCCCAGAATG
A
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