Ggra6841.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6841.t1
Unique NameGgra6841.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:649313..650248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog313624.NSP_33860
PFAMsUma2
Max annot lvl1117|Cyanobacteria
Evalue5.55e-05
EggNOG OGsCOG4636@1|root,COG4636@2|Bacteria,1G41P@1117|Cyanobacteria,1HTZA@1161|Nostocales
DescriptionPutative restriction endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6841Ggra6841Gracilaria gracilis GNS1m malegenetig00000056_pilon 649313..650248 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6841.t1.stop1Ggra6841.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 649313..649315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6841.t1.CDS1Ggra6841.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 649313..650248 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6841.t1.exon1Ggra6841.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 649313..650248 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6841.t1.start1Ggra6841.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 650246..650248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6841.t1Ggra6841.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 649313..650248 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6841.t1 ID=Ggra6841.t1|Name=Ggra6841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp
MRGSSFAAWDEPVGPLHNTSCTYQEYLLHTFDEEYHYDLVEGTLVSNHLS
TYISHRGCLNRIVRKVIQNRENSLHSQKPFTNSRIEIPAPTEGKRTIRRA
DLVIWKKEDDTKTANADESNRLKVEVFVLIPLALEKPQLVLEVTDYSSTR
EADLITKVHEYERRGIATYVIIDQATSDPSVIVHRLCEITEDSGRKQYQK
HVYRGSERVFCPFIGDMTAEEMLTPILGSAEPCESKQPVQRERVQELVLK
EREIALLKKERVRLRQELERLMLTEENYSTDSHSEEDDDPVAEKDDSTEN
NAPVLLDLRLK*
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spliced messenger RNA

>Ggra6841.t1 ID=Ggra6841.t1|Name=Ggra6841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000056_pilon:649313..650248- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGGAAGTTCTTTCGCTGCCTGGGACGAACCCGTTGGTCCACTGCA
CAATACCTCGTGCACCTATCAAGAGTATCTGCTTCACACATTTGACGAAG
AATACCATTACGACCTTGTGGAGGGCACATTAGTTTCCAATCATCTCTCG
ACTTACATTTCACATCGTGGATGTCTGAACAGAATTGTTCGCAAGGTCAT
CCAGAATCGCGAAAACAGTTTGCATTCTCAGAAGCCCTTTACAAACAGCA
GAATCGAAATACCAGCTCCGACTGAGGGTAAGCGCACGATCAGGCGGGCT
GACTTGGTTATTTGGAAGAAAGAGGACGATACGAAAACGGCCAACGCTGA
TGAGAGCAATCGCTTGAAGGTGGAAGTGTTTGTTCTAATTCCTTTAGCTT
TGGAGAAGCCGCAACTGGTACTGGAAGTTACCGATTACTCTTCAACGCGC
GAGGCAGATCTAATCACTAAGGTACACGAATACGAGCGCCGTGGAATTGC
GACATATGTGATTATTGACCAAGCAACATCAGACCCAAGCGTAATCGTTC
ACAGGCTGTGTGAGATAACCGAAGACTCTGGGCGTAAACAGTATCAGAAA
CATGTGTATCGAGGTTCAGAGCGTGTTTTTTGTCCTTTTATTGGTGATAT
GACCGCCGAAGAGATGTTAACACCCATACTTGGTTCTGCTGAGCCTTGTG
AATCTAAACAACCTGTTCAGAGGGAGAGAGTTCAGGAGCTAGTCCTTAAG
GAGAGAGAAATTGCACTCCTGAAGAAAGAAAGAGTACGCTTGAGGCAAGA
ACTAGAGCGGTTGATGCTGACGGAAGAGAATTATTCTACCGATTCGCATT
CTGAGGAAGATGATGACCCCGTCGCCGAAAAGGACGACAGCACAGAGAAC
AACGCACCAGTATTGCTAGATCTGCGTTTGAAGTGA
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protein sequence of Ggra6841.t1

>Ggra6841.t1 ID=Ggra6841.t1|Name=Ggra6841.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=312bp
MRGSSFAAWDEPVGPLHNTSCTYQEYLLHTFDEEYHYDLVEGTLVSNHLS
TYISHRGCLNRIVRKVIQNRENSLHSQKPFTNSRIEIPAPTEGKRTIRRA
DLVIWKKEDDTKTANADESNRLKVEVFVLIPLALEKPQLVLEVTDYSSTR
EADLITKVHEYERRGIATYVIIDQATSDPSVIVHRLCEITEDSGRKQYQK
HVYRGSERVFCPFIGDMTAEEMLTPILGSAEPCESKQPVQRERVQELVLK
EREIALLKKERVRLRQELERLMLTEENYSTDSHSEEDDDPVAEKDDSTEN
NAPVLLDLRLK*
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mRNA from alignment at tig00000056_pilon:649313..650248-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6841.t1 ID=Ggra6841.t1|Name=Ggra6841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000056_pilon:649313..650248- (Gracilaria gracilis GNS1m male)
ATGAGAGGAAGTTCTTTCGCTGCCTGGGACGAACCCGTTGGTCCACTGCA
CAATACCTCGTGCACCTATCAAGAGTATCTGCTTCACACATTTGACGAAG
AATACCATTACGACCTTGTGGAGGGCACATTAGTTTCCAATCATCTCTCG
ACTTACATTTCACATCGTGGATGTCTGAACAGAATTGTTCGCAAGGTCAT
CCAGAATCGCGAAAACAGTTTGCATTCTCAGAAGCCCTTTACAAACAGCA
GAATCGAAATACCAGCTCCGACTGAGGGTAAGCGCACGATCAGGCGGGCT
GACTTGGTTATTTGGAAGAAAGAGGACGATACGAAAACGGCCAACGCTGA
TGAGAGCAATCGCTTGAAGGTGGAAGTGTTTGTTCTAATTCCTTTAGCTT
TGGAGAAGCCGCAACTGGTACTGGAAGTTACCGATTACTCTTCAACGCGC
GAGGCAGATCTAATCACTAAGGTACACGAATACGAGCGCCGTGGAATTGC
GACATATGTGATTATTGACCAAGCAACATCAGACCCAAGCGTAATCGTTC
ACAGGCTGTGTGAGATAACCGAAGACTCTGGGCGTAAACAGTATCAGAAA
CATGTGTATCGAGGTTCAGAGCGTGTTTTTTGTCCTTTTATTGGTGATAT
GACCGCCGAAGAGATGTTAACACCCATACTTGGTTCTGCTGAGCCTTGTG
AATCTAAACAACCTGTTCAGAGGGAGAGAGTTCAGGAGCTAGTCCTTAAG
GAGAGAGAAATTGCACTCCTGAAGAAAGAAAGAGTACGCTTGAGGCAAGA
ACTAGAGCGGTTGATGCTGACGGAAGAGAATTATTCTACCGATTCGCATT
CTGAGGAAGATGATGACCCCGTCGCCGAAAAGGACGACAGCACAGAGAAC
AACGCACCAGTATTGCTAGATCTGCGTTTGAAGTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:649313..650248-

>Ggra6841.t1 ID=Ggra6841.t1|Name=Ggra6841.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00000056_pilon:649313..650248- (Gracilaria gracilis GNS1m male)
ATGAGAGGAAGTTCTTTCGCTGCCTGGGACGAACCCGTTGGTCCACTGCA
CAATACCTCGTGCACCTATCAAGAGTATCTGCTTCACACATTTGACGAAG
AATACCATTACGACCTTGTGGAGGGCACATTAGTTTCCAATCATCTCTCG
ACTTACATTTCACATCGTGGATGTCTGAACAGAATTGTTCGCAAGGTCAT
CCAGAATCGCGAAAACAGTTTGCATTCTCAGAAGCCCTTTACAAACAGCA
GAATCGAAATACCAGCTCCGACTGAGGGTAAGCGCACGATCAGGCGGGCT
GACTTGGTTATTTGGAAGAAAGAGGACGATACGAAAACGGCCAACGCTGA
TGAGAGCAATCGCTTGAAGGTGGAAGTGTTTGTTCTAATTCCTTTAGCTT
TGGAGAAGCCGCAACTGGTACTGGAAGTTACCGATTACTCTTCAACGCGC
GAGGCAGATCTAATCACTAAGGTACACGAATACGAGCGCCGTGGAATTGC
GACATATGTGATTATTGACCAAGCAACATCAGACCCAAGCGTAATCGTTC
ACAGGCTGTGTGAGATAACCGAAGACTCTGGGCGTAAACAGTATCAGAAA
CATGTGTATCGAGGTTCAGAGCGTGTTTTTTGTCCTTTTATTGGTGATAT
GACCGCCGAAGAGATGTTAACACCCATACTTGGTTCTGCTGAGCCTTGTG
AATCTAAACAACCTGTTCAGAGGGAGAGAGTTCAGGAGCTAGTCCTTAAG
GAGAGAGAAATTGCACTCCTGAAGAAAGAAAGAGTACGCTTGAGGCAAGA
ACTAGAGCGGTTGATGCTGACGGAAGAGAATTATTCTACCGATTCGCATT
CTGAGGAAGATGATGACCCCGTCGCCGAAAAGGACGACAGCACAGAGAAC
AACGCACCAGTATTGCTAGATCTGCGTTTGAAGTGA
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