Ggra6820.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6820.t1
Unique NameGgra6820.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:614863..615804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6820Ggra6820Gracilaria gracilis GNS1m malegenetig00000056_pilon 614863..615804 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6820.t1.start1Ggra6820.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 614863..614865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6820.t1.CDS1Ggra6820.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 614863..615804 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6820.t1.exon1Ggra6820.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 614863..615804 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6820.t1.stop1Ggra6820.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 615802..615804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6820.t1Ggra6820.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 614863..615804 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6820.t1 ID=Ggra6820.t1|Name=Ggra6820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=314bp
MSKDTKLSTIASDLHSLFVKLASACLKEEPHDVEQFCLQWLANHHGLDLD
SEFAITRVQSGDFREEKKSKSKRNRNRGRKNGKKAGNAEDYTTDDNQNPN
ELFHTDSASKGSESGPETLGRVETVAEDAQLSAPSCSLFSTAVISGHELN
RKTELYRKDERMKSLFRAWDGDGSGRVDFVELVLALHKFEDVASAGIDIQ
VASDALVQFVESDTERELNLTEFTRVIILFALNSFKADFESVADHMLAVA
TSTSEAAVLRAACGADVSDLQAADKEEQEFLREAALGMEQHVTDNIQKLR
EQRTPRNSHLSSN*
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spliced messenger RNA

>Ggra6820.t1 ID=Ggra6820.t1|Name=Ggra6820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000056_pilon:614863..615804+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAAGGATACAAAGCTTAGTACGATTGCATCCGATCTCCACTCATT
ATTTGTCAAGCTTGCATCAGCATGTCTGAAAGAAGAACCTCACGACGTCG
AACAGTTCTGTCTTCAATGGCTCGCCAACCATCACGGTTTGGATCTTGAC
AGTGAGTTTGCAATCACTCGCGTTCAGAGCGGTGATTTTCGAGAAGAAAA
GAAATCGAAGTCAAAGAGAAATCGCAACCGTGGCAGGAAGAATGGAAAGA
AAGCTGGAAACGCAGAAGACTACACAACTGACGACAATCAGAATCCCAAC
GAGCTATTCCATACTGATAGTGCTTCGAAAGGTTCCGAGTCTGGACCTGA
AACACTTGGACGTGTTGAAACAGTTGCAGAGGATGCGCAACTGAGTGCCC
CTTCTTGTTCTTTGTTTTCAACGGCTGTCATATCTGGTCATGAACTAAAT
CGCAAGACCGAGCTTTATCGAAAGGATGAGAGGATGAAGAGTTTGTTTCG
CGCATGGGATGGTGATGGCAGTGGAAGGGTTGATTTCGTGGAACTAGTTC
TTGCTCTTCACAAGTTTGAAGATGTGGCCAGTGCAGGGATTGATATTCAA
GTTGCCTCTGATGCTTTAGTTCAGTTCGTAGAGTCTGACACTGAGCGTGA
ACTCAATTTGACAGAGTTCACTAGAGTAATCATTCTGTTCGCCCTCAATA
GCTTCAAGGCAGACTTTGAAAGTGTGGCCGATCATATGCTCGCTGTTGCT
ACGAGTACAAGTGAAGCTGCAGTGTTGCGTGCTGCTTGTGGGGCTGATGT
GAGTGACCTTCAAGCAGCAGATAAGGAAGAACAGGAATTCCTGCGAGAGG
CCGCATTGGGCATGGAGCAGCATGTGACGGATAACATCCAAAAGTTGCGT
GAGCAGCGAACTCCGCGCAACTCTCATCTGTCCAGCAACTAA
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protein sequence of Ggra6820.t1

>Ggra6820.t1 ID=Ggra6820.t1|Name=Ggra6820.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MSKDTKLSTIASDLHSLFVKLASACLKEEPHDVEQFCLQWLANHHGLDLD
SEFAITRVQSGDFREEKKSKSKRNRNRGRKNGKKAGNAEDYTTDDNQNPN
ELFHTDSASKGSESGPETLGRVETVAEDAQLSAPSCSLFSTAVISGHELN
RKTELYRKDERMKSLFRAWDGDGSGRVDFVELVLALHKFEDVASAGIDIQ
VASDALVQFVESDTERELNLTEFTRVIILFALNSFKADFESVADHMLAVA
TSTSEAAVLRAACGADVSDLQAADKEEQEFLREAALGMEQHVTDNIQKLR
EQRTPRNSHLSSN*
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mRNA from alignment at tig00000056_pilon:614863..615804+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6820.t1 ID=Ggra6820.t1|Name=Ggra6820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000056_pilon:614863..615804+ (Gracilaria gracilis GNS1m male)
ATGTCAAAGGATACAAAGCTTAGTACGATTGCATCCGATCTCCACTCATT
ATTTGTCAAGCTTGCATCAGCATGTCTGAAAGAAGAACCTCACGACGTCG
AACAGTTCTGTCTTCAATGGCTCGCCAACCATCACGGTTTGGATCTTGAC
AGTGAGTTTGCAATCACTCGCGTTCAGAGCGGTGATTTTCGAGAAGAAAA
GAAATCGAAGTCAAAGAGAAATCGCAACCGTGGCAGGAAGAATGGAAAGA
AAGCTGGAAACGCAGAAGACTACACAACTGACGACAATCAGAATCCCAAC
GAGCTATTCCATACTGATAGTGCTTCGAAAGGTTCCGAGTCTGGACCTGA
AACACTTGGACGTGTTGAAACAGTTGCAGAGGATGCGCAACTGAGTGCCC
CTTCTTGTTCTTTGTTTTCAACGGCTGTCATATCTGGTCATGAACTAAAT
CGCAAGACCGAGCTTTATCGAAAGGATGAGAGGATGAAGAGTTTGTTTCG
CGCATGGGATGGTGATGGCAGTGGAAGGGTTGATTTCGTGGAACTAGTTC
TTGCTCTTCACAAGTTTGAAGATGTGGCCAGTGCAGGGATTGATATTCAA
GTTGCCTCTGATGCTTTAGTTCAGTTCGTAGAGTCTGACACTGAGCGTGA
ACTCAATTTGACAGAGTTCACTAGAGTAATCATTCTGTTCGCCCTCAATA
GCTTCAAGGCAGACTTTGAAAGTGTGGCCGATCATATGCTCGCTGTTGCT
ACGAGTACAAGTGAAGCTGCAGTGTTGCGTGCTGCTTGTGGGGCTGATGT
GAGTGACCTTCAAGCAGCAGATAAGGAAGAACAGGAATTCCTGCGAGAGG
CCGCATTGGGCATGGAGCAGCATGTGACGGATAACATCCAAAAGTTGCGT
GAGCAGCGAACTCCGCGCAACTCTCATCTGTCCAGCAACTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:614863..615804+

>Ggra6820.t1 ID=Ggra6820.t1|Name=Ggra6820.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000056_pilon:614863..615804+ (Gracilaria gracilis GNS1m male)
ATGTCAAAGGATACAAAGCTTAGTACGATTGCATCCGATCTCCACTCATT
ATTTGTCAAGCTTGCATCAGCATGTCTGAAAGAAGAACCTCACGACGTCG
AACAGTTCTGTCTTCAATGGCTCGCCAACCATCACGGTTTGGATCTTGAC
AGTGAGTTTGCAATCACTCGCGTTCAGAGCGGTGATTTTCGAGAAGAAAA
GAAATCGAAGTCAAAGAGAAATCGCAACCGTGGCAGGAAGAATGGAAAGA
AAGCTGGAAACGCAGAAGACTACACAACTGACGACAATCAGAATCCCAAC
GAGCTATTCCATACTGATAGTGCTTCGAAAGGTTCCGAGTCTGGACCTGA
AACACTTGGACGTGTTGAAACAGTTGCAGAGGATGCGCAACTGAGTGCCC
CTTCTTGTTCTTTGTTTTCAACGGCTGTCATATCTGGTCATGAACTAAAT
CGCAAGACCGAGCTTTATCGAAAGGATGAGAGGATGAAGAGTTTGTTTCG
CGCATGGGATGGTGATGGCAGTGGAAGGGTTGATTTCGTGGAACTAGTTC
TTGCTCTTCACAAGTTTGAAGATGTGGCCAGTGCAGGGATTGATATTCAA
GTTGCCTCTGATGCTTTAGTTCAGTTCGTAGAGTCTGACACTGAGCGTGA
ACTCAATTTGACAGAGTTCACTAGAGTAATCATTCTGTTCGCCCTCAATA
GCTTCAAGGCAGACTTTGAAAGTGTGGCCGATCATATGCTCGCTGTTGCT
ACGAGTACAAGTGAAGCTGCAGTGTTGCGTGCTGCTTGTGGGGCTGATGT
GAGTGACCTTCAAGCAGCAGATAAGGAAGAACAGGAATTCCTGCGAGAGG
CCGCATTGGGCATGGAGCAGCATGTGACGGATAACATCCAAAAGTTGCGT
GAGCAGCGAACTCCGCGCAACTCTCATCTGTCCAGCAACTAA
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