Ggra6814.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6814.t1
Unique NameGgra6814.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:600359..600985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708590.1
PFAMsPRA1
Max annot lvl2759|Eukaryota
KEGG rclassRC02078
KEGG koko:K12638,ko:K19496,ko:K20359
KEGG TC1.A.17.1.1,1.A.17.1.22,9.A.49.1
KEGG ReactionR07431,R07448,R07786,R07787,R07791,R07792
KEGG Pathwayko00905,ko01100,ko01110,map00905,map01100,map01110
KEGG ModuleM00371
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016032,GO:0016192,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0040011,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044000,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044766,GO:0046739,GO:0046794,GO:0051179,GO:0051234,GO:0051701,GO:0051704,GO:0051814,GO:0052126,GO:0052192,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1902579
Evalue9.86e-28
EggNOG OGsKOG3142@1|root,KOG3142@2759|Eukaryota
EC1.14.13.112
Descriptionvesicle-mediated transport
COG categoryU
BRITEko00000,ko00001,ko00002,ko00199,ko01000,ko02000,ko04040,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6814Ggra6814Gracilaria gracilis GNS1m malegenetig00000056_pilon 600359..600985 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6814.t1.stop1Ggra6814.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 600359..600361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6814.t1.CDS1Ggra6814.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 600359..600985 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6814.t1.exon1Ggra6814.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 600359..600985 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6814.t1.start1Ggra6814.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 600983..600985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6814.t1Ggra6814.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 600359..600985 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6814.t1 ID=Ggra6814.t1|Name=Ggra6814.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=209bp
MPASAPSPPLSTQPNGPSAPAAKLLGTISSLVSLSQLSSALTTSVPALAP
HTENAKTHASALWTSAKPWTEFFNGKKFVPPSSPAELQERLVDNLTYFSS
NYLLCFLVLSTASVLIHPLSFLCIVLIMGLYVFMFLQNPESVALGPLRLT
ANSKKIAFAAISFLLLYLTNAMGIIGSWALFGIILSLIHAACRVSAKEPD
FESPVTSV*
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spliced messenger RNA

>Ggra6814.t1 ID=Ggra6814.t1|Name=Ggra6814.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000056_pilon:600359..600985- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCTCCGCGCCCTCCCCTCCGCTCTCCACGCAGCCTAATGGACC
CTCCGCGCCGGCCGCAAAATTGCTTGGTACCATCTCTTCCCTCGTTTCGC
TCTCGCAGCTCTCGAGCGCGCTGACTACGTCCGTGCCGGCGCTTGCGCCA
CACACTGAGAATGCCAAGACGCATGCGTCGGCGCTGTGGACTTCTGCCAA
ACCGTGGACTGAGTTTTTCAACGGCAAGAAGTTTGTGCCGCCCTCTAGTC
CTGCCGAGTTGCAGGAGCGATTGGTGGACAACTTGACGTACTTTTCTAGC
AATTACTTGCTCTGTTTCTTGGTGCTTTCCACTGCCAGTGTTCTCATTCA
TCCCTTATCGTTTCTTTGCATTGTTCTGATCATGGGGCTCTACGTGTTTA
TGTTTTTGCAAAATCCTGAATCTGTTGCCCTTGGACCGCTGCGACTAACT
GCTAATTCGAAGAAGATCGCCTTTGCAGCCATCTCTTTCTTGCTTCTCTA
CCTTACCAATGCCATGGGTATCATTGGTTCCTGGGCTTTGTTTGGAATCA
TTCTCAGTCTAATACATGCTGCTTGTCGAGTCTCAGCAAAGGAACCAGAC
TTTGAATCACCTGTCACCTCGGTATGA
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protein sequence of Ggra6814.t1

>Ggra6814.t1 ID=Ggra6814.t1|Name=Ggra6814.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=209bp
MPASAPSPPLSTQPNGPSAPAAKLLGTISSLVSLSQLSSALTTSVPALAP
HTENAKTHASALWTSAKPWTEFFNGKKFVPPSSPAELQERLVDNLTYFSS
NYLLCFLVLSTASVLIHPLSFLCIVLIMGLYVFMFLQNPESVALGPLRLT
ANSKKIAFAAISFLLLYLTNAMGIIGSWALFGIILSLIHAACRVSAKEPD
FESPVTSV*
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mRNA from alignment at tig00000056_pilon:600359..600985-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6814.t1 ID=Ggra6814.t1|Name=Ggra6814.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000056_pilon:600359..600985- (Gracilaria gracilis GNS1m male)
ATGCCCGCCTCCGCGCCCTCCCCTCCGCTCTCCACGCAGCCTAATGGACC
CTCCGCGCCGGCCGCAAAATTGCTTGGTACCATCTCTTCCCTCGTTTCGC
TCTCGCAGCTCTCGAGCGCGCTGACTACGTCCGTGCCGGCGCTTGCGCCA
CACACTGAGAATGCCAAGACGCATGCGTCGGCGCTGTGGACTTCTGCCAA
ACCGTGGACTGAGTTTTTCAACGGCAAGAAGTTTGTGCCGCCCTCTAGTC
CTGCCGAGTTGCAGGAGCGATTGGTGGACAACTTGACGTACTTTTCTAGC
AATTACTTGCTCTGTTTCTTGGTGCTTTCCACTGCCAGTGTTCTCATTCA
TCCCTTATCGTTTCTTTGCATTGTTCTGATCATGGGGCTCTACGTGTTTA
TGTTTTTGCAAAATCCTGAATCTGTTGCCCTTGGACCGCTGCGACTAACT
GCTAATTCGAAGAAGATCGCCTTTGCAGCCATCTCTTTCTTGCTTCTCTA
CCTTACCAATGCCATGGGTATCATTGGTTCCTGGGCTTTGTTTGGAATCA
TTCTCAGTCTAATACATGCTGCTTGTCGAGTCTCAGCAAAGGAACCAGAC
TTTGAATCACCTGTCACCTCGGTATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:600359..600985-

>Ggra6814.t1 ID=Ggra6814.t1|Name=Ggra6814.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=627bp|location=Sequence derived from alignment at tig00000056_pilon:600359..600985- (Gracilaria gracilis GNS1m male)
ATGCCCGCCTCCGCGCCCTCCCCTCCGCTCTCCACGCAGCCTAATGGACC
CTCCGCGCCGGCCGCAAAATTGCTTGGTACCATCTCTTCCCTCGTTTCGC
TCTCGCAGCTCTCGAGCGCGCTGACTACGTCCGTGCCGGCGCTTGCGCCA
CACACTGAGAATGCCAAGACGCATGCGTCGGCGCTGTGGACTTCTGCCAA
ACCGTGGACTGAGTTTTTCAACGGCAAGAAGTTTGTGCCGCCCTCTAGTC
CTGCCGAGTTGCAGGAGCGATTGGTGGACAACTTGACGTACTTTTCTAGC
AATTACTTGCTCTGTTTCTTGGTGCTTTCCACTGCCAGTGTTCTCATTCA
TCCCTTATCGTTTCTTTGCATTGTTCTGATCATGGGGCTCTACGTGTTTA
TGTTTTTGCAAAATCCTGAATCTGTTGCCCTTGGACCGCTGCGACTAACT
GCTAATTCGAAGAAGATCGCCTTTGCAGCCATCTCTTTCTTGCTTCTCTA
CCTTACCAATGCCATGGGTATCATTGGTTCCTGGGCTTTGTTTGGAATCA
TTCTCAGTCTAATACATGCTGCTTGTCGAGTCTCAGCAAAGGAACCAGAC
TTTGAATCACCTGTCACCTCGGTATGA
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