Ggra6761.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6761.t1
Unique NameGgra6761.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:449771..450463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3711.Bra000031.1-P
PFAMsSOUL
Max annot lvl35493|Streptophyta
Evalue1.05e-38
EggNOG OGs28MKZ@1|root,2QU4S@2759|Eukaryota,37MY7@33090|Viridiplantae,3GDNS@35493|Streptophyta,3HXFX@3699|Brassicales
DescriptionSOUL heme-binding protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6761Ggra6761Gracilaria gracilis GNS1m malegenetig00000056_pilon 449771..450463 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6761.t1.stop1Ggra6761.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 449771..449773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6761.t1.CDS1Ggra6761.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 449771..450463 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6761.t1.exon1Ggra6761.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 449771..450463 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6761.t1.start1Ggra6761.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 450461..450463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6761.t1Ggra6761.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 449771..450463 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6761.t1 ID=Ggra6761.t1|Name=Ggra6761.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=231bp
MGAVVGKIAEETPAHVVVRRADGYQVWRYPASVVAVVRAASLDAAHTPRG
DAFTNQAFRMLARYIGVFGTPENRAAGAQQAEPEKLAMTAPVIMPAPQKL
AMTAPVIMPNAQQDAETGTDCMMFVLPAHISSVEEAPRPNNDAVTIEQLP
AGRCEAVLAFSGGADMKQYTEKANQLLSMLERDGVSVVGDWNAQGYNPPF
TLPWLRRNEVHVPVEAQPYADMEGEAKKAD*
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spliced messenger RNA

>Ggra6761.t1 ID=Ggra6761.t1|Name=Ggra6761.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000056_pilon:449771..450463- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCCGTCGTGGGGAAGATCGCCGAGGAGACGCCGGCGCACGTCGT
CGTGCGCCGCGCCGACGGCTACCAGGTATGGCGCTATCCGGCCAGCGTGG
TGGCAGTCGTGCGCGCCGCGTCGTTGGATGCGGCGCACACGCCGCGCGGC
GACGCCTTCACCAACCAGGCGTTCCGCATGCTGGCGCGCTACATCGGCGT
GTTCGGCACGCCAGAGAATCGCGCCGCCGGCGCGCAGCAGGCGGAGCCCG
AGAAGCTCGCCATGACCGCGCCCGTCATCATGCCCGCCCCGCAGAAGCTC
GCCATGACTGCGCCCGTCATCATGCCCAACGCGCAGCAAGACGCCGAGAC
CGGCACGGACTGTATGATGTTTGTGCTCCCGGCGCACATTTCAAGCGTGG
AGGAGGCGCCGCGCCCCAACAACGACGCCGTCACCATTGAGCAGTTGCCC
GCCGGTAGATGTGAGGCTGTTCTTGCGTTTAGTGGCGGCGCGGACATGAA
GCAGTACACGGAGAAGGCAAATCAGCTGCTGTCGATGCTGGAACGCGATG
GCGTCTCCGTGGTTGGCGATTGGAATGCGCAGGGATATAATCCGCCCTTC
ACGCTACCGTGGCTGCGTAGGAATGAGGTGCACGTGCCCGTGGAAGCGCA
GCCGTACGCCGACATGGAGGGAGAAGCGAAGAAAGCCGATTGA
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protein sequence of Ggra6761.t1

>Ggra6761.t1 ID=Ggra6761.t1|Name=Ggra6761.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=231bp
MGAVVGKIAEETPAHVVVRRADGYQVWRYPASVVAVVRAASLDAAHTPRG
DAFTNQAFRMLARYIGVFGTPENRAAGAQQAEPEKLAMTAPVIMPAPQKL
AMTAPVIMPNAQQDAETGTDCMMFVLPAHISSVEEAPRPNNDAVTIEQLP
AGRCEAVLAFSGGADMKQYTEKANQLLSMLERDGVSVVGDWNAQGYNPPF
TLPWLRRNEVHVPVEAQPYADMEGEAKKAD*
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mRNA from alignment at tig00000056_pilon:449771..450463-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6761.t1 ID=Ggra6761.t1|Name=Ggra6761.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000056_pilon:449771..450463- (Gracilaria gracilis GNS1m male)
ATGGGAGCCGTCGTGGGGAAGATCGCCGAGGAGACGCCGGCGCACGTCGT
CGTGCGCCGCGCCGACGGCTACCAGGTATGGCGCTATCCGGCCAGCGTGG
TGGCAGTCGTGCGCGCCGCGTCGTTGGATGCGGCGCACACGCCGCGCGGC
GACGCCTTCACCAACCAGGCGTTCCGCATGCTGGCGCGCTACATCGGCGT
GTTCGGCACGCCAGAGAATCGCGCCGCCGGCGCGCAGCAGGCGGAGCCCG
AGAAGCTCGCCATGACCGCGCCCGTCATCATGCCCGCCCCGCAGAAGCTC
GCCATGACTGCGCCCGTCATCATGCCCAACGCGCAGCAAGACGCCGAGAC
CGGCACGGACTGTATGATGTTTGTGCTCCCGGCGCACATTTCAAGCGTGG
AGGAGGCGCCGCGCCCCAACAACGACGCCGTCACCATTGAGCAGTTGCCC
GCCGGTAGATGTGAGGCTGTTCTTGCGTTTAGTGGCGGCGCGGACATGAA
GCAGTACACGGAGAAGGCAAATCAGCTGCTGTCGATGCTGGAACGCGATG
GCGTCTCCGTGGTTGGCGATTGGAATGCGCAGGGATATAATCCGCCCTTC
ACGCTACCGTGGCTGCGTAGGAATGAGGTGCACGTGCCCGTGGAAGCGCA
GCCGTACGCCGACATGGAGGGAGAAGCGAAGAAAGCCGATTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:449771..450463-

>Ggra6761.t1 ID=Ggra6761.t1|Name=Ggra6761.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=693bp|location=Sequence derived from alignment at tig00000056_pilon:449771..450463- (Gracilaria gracilis GNS1m male)
ATGGGAGCCGTCGTGGGGAAGATCGCCGAGGAGACGCCGGCGCACGTCGT
CGTGCGCCGCGCCGACGGCTACCAGGTATGGCGCTATCCGGCCAGCGTGG
TGGCAGTCGTGCGCGCCGCGTCGTTGGATGCGGCGCACACGCCGCGCGGC
GACGCCTTCACCAACCAGGCGTTCCGCATGCTGGCGCGCTACATCGGCGT
GTTCGGCACGCCAGAGAATCGCGCCGCCGGCGCGCAGCAGGCGGAGCCCG
AGAAGCTCGCCATGACCGCGCCCGTCATCATGCCCGCCCCGCAGAAGCTC
GCCATGACTGCGCCCGTCATCATGCCCAACGCGCAGCAAGACGCCGAGAC
CGGCACGGACTGTATGATGTTTGTGCTCCCGGCGCACATTTCAAGCGTGG
AGGAGGCGCCGCGCCCCAACAACGACGCCGTCACCATTGAGCAGTTGCCC
GCCGGTAGATGTGAGGCTGTTCTTGCGTTTAGTGGCGGCGCGGACATGAA
GCAGTACACGGAGAAGGCAAATCAGCTGCTGTCGATGCTGGAACGCGATG
GCGTCTCCGTGGTTGGCGATTGGAATGCGCAGGGATATAATCCGCCCTTC
ACGCTACCGTGGCTGCGTAGGAATGAGGTGCACGTGCCCGTGGAAGCGCA
GCCGTACGCCGACATGGAGGGAGAAGCGAAGAAAGCCGATTGA
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