Ggra6758.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6758.t1
Unique NameGgra6758.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:446652..447611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_03321T0
PFAMsWD40
Max annot lvl4751|Fungi
KEGG koko:K12880
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00406
GOsGO:0000346,GO:0000347,GO:0000445,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0031503,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705
Evalue1.18e-53
EggNOG OGsKOG1407@1|root,KOG1407@2759|Eukaryota,38FC1@33154|Opisthokonta,3NX7A@4751|Fungi,1GSNF@112252|Fungi incertae sedis
DescriptionEukaryotic translation initiation factor eIF2A
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6758Ggra6758Gracilaria gracilis GNS1m malegenetig00000056_pilon 446652..447611 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6758.t1.start1Ggra6758.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 446652..446654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6758.t1.CDS1Ggra6758.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 446652..447611 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6758.t1.exon1Ggra6758.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 446652..447611 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6758.t1.stop1Ggra6758.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 447609..447611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6758.t1Ggra6758.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 446652..447611 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6758.t1 ID=Ggra6758.t1|Name=Ggra6758.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MSVFHDLESKRCFGHRSSVTAVAWNLDGSRLLAAGDASAVLVYDTQSLAM
STRPERNFLHECHGHTKNIEAIVPSQTSPDMFVTGGVDCLINVYDTRTGS
RAIHTVPTDSKCLFADWAPDGNTVAIGLSSNTVYFVDCLSWTVRKKMPFG
GEVNQFRWTPDGRRIMFTRGDGSVDAYSWPSLDHIITIQGHVDTCMGVAC
DPKGRFVAIASLDTCVSIWDSMSLSNVFTIDRWEKAVQLVDYSYEGQYLA
MTGDLEKIDITDASTGTLVHSISTVAVLNGFAWHPSRLLLAYAPMKVGVR
DRYVTEQPATYVWGFPRAK*
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spliced messenger RNA

>Ggra6758.t1 ID=Ggra6758.t1|Name=Ggra6758.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000056_pilon:446652..447611+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTTTTCCACGATTTGGAATCTAAACGCTGTTTTGGTCATCGTTC
CTCTGTCACTGCCGTTGCATGGAATCTGGACGGATCTCGACTACTAGCAG
CCGGGGACGCTTCGGCTGTTTTGGTATACGACACACAAAGTCTGGCGATG
AGTACCCGACCAGAACGCAACTTTTTGCATGAATGCCACGGTCACACAAA
GAACATCGAGGCAATTGTTCCAAGCCAAACGTCTCCCGATATGTTTGTGA
CTGGCGGTGTAGACTGTCTCATCAATGTCTACGACACACGAACCGGATCT
AGAGCCATCCATACCGTACCGACTGATTCAAAATGCCTATTCGCGGATTG
GGCCCCTGATGGAAACACGGTTGCGATTGGTTTGTCAAGCAATACAGTTT
ACTTTGTGGATTGCCTGTCCTGGACTGTTCGAAAGAAAATGCCTTTTGGC
GGGGAGGTTAATCAGTTCAGGTGGACGCCGGACGGAAGACGAATCATGTT
TACGCGAGGGGATGGAAGCGTTGATGCATACTCGTGGCCTTCCCTTGACC
ACATTATAACCATACAAGGTCATGTGGATACATGCATGGGGGTCGCATGT
GATCCTAAAGGTAGGTTCGTCGCAATCGCCAGTCTTGATACATGTGTGAG
CATCTGGGATTCGATGAGTCTATCCAATGTTTTCACTATTGATCGATGGG
AGAAAGCTGTCCAACTGGTGGATTACTCGTATGAAGGTCAATATCTGGCC
ATGACGGGAGATTTGGAGAAGATTGACATCACCGACGCATCGACAGGCAC
TTTGGTGCACTCAATATCCACGGTAGCCGTACTGAACGGGTTTGCATGGC
ACCCTTCTCGGCTTCTGCTAGCATACGCACCTATGAAAGTTGGGGTACGT
GATCGATATGTGACAGAGCAACCGGCGACATATGTTTGGGGATTTCCGAG
GGCAAAATGA
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protein sequence of Ggra6758.t1

>Ggra6758.t1 ID=Ggra6758.t1|Name=Ggra6758.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MSVFHDLESKRCFGHRSSVTAVAWNLDGSRLLAAGDASAVLVYDTQSLAM
STRPERNFLHECHGHTKNIEAIVPSQTSPDMFVTGGVDCLINVYDTRTGS
RAIHTVPTDSKCLFADWAPDGNTVAIGLSSNTVYFVDCLSWTVRKKMPFG
GEVNQFRWTPDGRRIMFTRGDGSVDAYSWPSLDHIITIQGHVDTCMGVAC
DPKGRFVAIASLDTCVSIWDSMSLSNVFTIDRWEKAVQLVDYSYEGQYLA
MTGDLEKIDITDASTGTLVHSISTVAVLNGFAWHPSRLLLAYAPMKVGVR
DRYVTEQPATYVWGFPRAK*
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mRNA from alignment at tig00000056_pilon:446652..447611+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6758.t1 ID=Ggra6758.t1|Name=Ggra6758.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000056_pilon:446652..447611+ (Gracilaria gracilis GNS1m male)
ATGTCTGTTTTCCACGATTTGGAATCTAAACGCTGTTTTGGTCATCGTTC
CTCTGTCACTGCCGTTGCATGGAATCTGGACGGATCTCGACTACTAGCAG
CCGGGGACGCTTCGGCTGTTTTGGTATACGACACACAAAGTCTGGCGATG
AGTACCCGACCAGAACGCAACTTTTTGCATGAATGCCACGGTCACACAAA
GAACATCGAGGCAATTGTTCCAAGCCAAACGTCTCCCGATATGTTTGTGA
CTGGCGGTGTAGACTGTCTCATCAATGTCTACGACACACGAACCGGATCT
AGAGCCATCCATACCGTACCGACTGATTCAAAATGCCTATTCGCGGATTG
GGCCCCTGATGGAAACACGGTTGCGATTGGTTTGTCAAGCAATACAGTTT
ACTTTGTGGATTGCCTGTCCTGGACTGTTCGAAAGAAAATGCCTTTTGGC
GGGGAGGTTAATCAGTTCAGGTGGACGCCGGACGGAAGACGAATCATGTT
TACGCGAGGGGATGGAAGCGTTGATGCATACTCGTGGCCTTCCCTTGACC
ACATTATAACCATACAAGGTCATGTGGATACATGCATGGGGGTCGCATGT
GATCCTAAAGGTAGGTTCGTCGCAATCGCCAGTCTTGATACATGTGTGAG
CATCTGGGATTCGATGAGTCTATCCAATGTTTTCACTATTGATCGATGGG
AGAAAGCTGTCCAACTGGTGGATTACTCGTATGAAGGTCAATATCTGGCC
ATGACGGGAGATTTGGAGAAGATTGACATCACCGACGCATCGACAGGCAC
TTTGGTGCACTCAATATCCACGGTAGCCGTACTGAACGGGTTTGCATGGC
ACCCTTCTCGGCTTCTGCTAGCATACGCACCTATGAAAGTTGGGGTACGT
GATCGATATGTGACAGAGCAACCGGCGACATATGTTTGGGGATTTCCGAG
GGCAAAATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:446652..447611+

>Ggra6758.t1 ID=Ggra6758.t1|Name=Ggra6758.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000056_pilon:446652..447611+ (Gracilaria gracilis GNS1m male)
ATGTCTGTTTTCCACGATTTGGAATCTAAACGCTGTTTTGGTCATCGTTC
CTCTGTCACTGCCGTTGCATGGAATCTGGACGGATCTCGACTACTAGCAG
CCGGGGACGCTTCGGCTGTTTTGGTATACGACACACAAAGTCTGGCGATG
AGTACCCGACCAGAACGCAACTTTTTGCATGAATGCCACGGTCACACAAA
GAACATCGAGGCAATTGTTCCAAGCCAAACGTCTCCCGATATGTTTGTGA
CTGGCGGTGTAGACTGTCTCATCAATGTCTACGACACACGAACCGGATCT
AGAGCCATCCATACCGTACCGACTGATTCAAAATGCCTATTCGCGGATTG
GGCCCCTGATGGAAACACGGTTGCGATTGGTTTGTCAAGCAATACAGTTT
ACTTTGTGGATTGCCTGTCCTGGACTGTTCGAAAGAAAATGCCTTTTGGC
GGGGAGGTTAATCAGTTCAGGTGGACGCCGGACGGAAGACGAATCATGTT
TACGCGAGGGGATGGAAGCGTTGATGCATACTCGTGGCCTTCCCTTGACC
ACATTATAACCATACAAGGTCATGTGGATACATGCATGGGGGTCGCATGT
GATCCTAAAGGTAGGTTCGTCGCAATCGCCAGTCTTGATACATGTGTGAG
CATCTGGGATTCGATGAGTCTATCCAATGTTTTCACTATTGATCGATGGG
AGAAAGCTGTCCAACTGGTGGATTACTCGTATGAAGGTCAATATCTGGCC
ATGACGGGAGATTTGGAGAAGATTGACATCACCGACGCATCGACAGGCAC
TTTGGTGCACTCAATATCCACGGTAGCCGTACTGAACGGGTTTGCATGGC
ACCCTTCTCGGCTTCTGCTAGCATACGCACCTATGAAAGTTGGGGTACGT
GATCGATATGTGACAGAGCAACCGGCGACATATGTTTGGGGATTTCCGAG
GGCAAAATGA
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