Ggra6750.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6750.t1
Unique NameGgra6750.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length542
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:348710..350335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703729.1
Preferred nameBRF1
PFAMsBRF1,TFIIB,TF_Zn_Ribbon
Max annot lvl2759|Eukaryota
KEGG koko:K15196
GOsGO:0000126,GO:0000976,GO:0000992,GO:0000994,GO:0000995,GO:0001006,GO:0001016,GO:0001025,GO:0001032,GO:0001067,GO:0001112,GO:0001120,GO:0001156,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006355,GO:0006359,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009304,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015074,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032091,GO:0032196,GO:0032774,GO:0032991,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043487,GO:0043488,GO:0043496,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045945,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051098,GO:0051100,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061013,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070063,GO:0070893,GO:0070897,GO:0070898,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090074,GO:0090304,GO:0090576,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
Evalue2.57e-100
EggNOG OGsCOG1405@1|root,KOG1598@2759|Eukaryota
DescriptionRNA polymerase III type 3 promoter DNA binding
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6750Ggra6750Gracilaria gracilis GNS1m malegenetig00000056_pilon 348710..350335 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6750.t1.stop1Ggra6750.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 348710..348712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6750.t1.CDS1Ggra6750.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 348710..350335 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6750.t1.exon1Ggra6750.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 348710..350335 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6750.t1.start1Ggra6750.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 350333..350335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6750.t1Ggra6750.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 348710..350335 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6750.t1 ID=Ggra6750.t1|Name=Ggra6750.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=542bp
MSTQVQKCSACGSDEIDFDAARGQASCMSCGEVLEQNAIVAEVGFAEDAR
GRSNMVGQHVRADGTSNFASMPGYSARATFTTMLNARHRLRQLASTLKLH
QRHTEAAERLFRLGAERNFHRGRRLANVCCACLYAVCRIEKTPHMLLDFS
DVLETNVYLLGHTFLKFAQVVSLNLPIIDPSLYIHRFASKLEFGDKTNAV
AMTALRILARMQRDWLSHGRRPSSLCGAALMCAAGMHQFHRSMVDVCRVV
RIGNVTLRERLQELNKTPTAALTAAQIVSRGGDDGKISSLILEEEPTACD
PPAFQRAQKVKQLKRKHAEIRKAQAKDAAIGKRKGIETDFPSAAGRLVRP
EGDTVIDDASIQKQMQQVLASVEMQELDEESRQEEQLTAAVASRLPETDS
DEDRRKADAEKEFAQENWKDAENHNEDLSDLEEEDMQMYFNTEEECRRKA
VLWTEINKDYLEKQERLETMRRERPDDFKRLRPTRKAPKKKGSGAEKGQK
TSTKGKKDVDTEPPAPKPSKKLNYAKLKQLALAAGQEVQTL*
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spliced messenger RNA

>Ggra6750.t1 ID=Ggra6750.t1|Name=Ggra6750.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1626bp|location=Sequence derived from alignment at tig00000056_pilon:348710..350335- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACTCAAGTGCAAAAATGCTCCGCGTGCGGGAGCGACGAAATCGA
CTTTGATGCCGCACGCGGTCAGGCGTCATGTATGTCATGTGGTGAAGTGC
TCGAGCAAAACGCCATCGTCGCAGAAGTAGGATTCGCCGAAGATGCACGA
GGCCGTTCTAATATGGTCGGACAACATGTACGCGCGGATGGCACATCCAA
CTTTGCATCTATGCCAGGCTATTCCGCGCGAGCTACTTTCACCACGATGC
TCAACGCTCGACATAGGTTGCGACAATTGGCGTCTACTCTCAAATTACAT
CAGCGACATACGGAGGCTGCTGAACGTCTCTTCCGCCTTGGTGCCGAGCG
CAATTTTCACAGAGGCAGACGGCTGGCAAATGTTTGTTGTGCTTGTCTGT
ATGCTGTTTGTCGAATTGAGAAGACTCCACACATGTTGCTCGACTTCTCG
GATGTGCTTGAAACCAATGTTTATTTGCTCGGGCACACGTTTCTCAAGTT
TGCGCAGGTCGTTTCTCTTAATCTGCCTATCATTGACCCAAGTCTTTATA
TCCATCGTTTCGCTAGCAAGCTTGAATTTGGAGATAAAACGAATGCCGTT
GCCATGACTGCGCTCCGAATTCTAGCCCGCATGCAACGTGACTGGTTGAG
CCATGGTAGGAGACCAAGCAGTCTGTGTGGTGCTGCGCTCATGTGTGCAG
CCGGCATGCACCAGTTTCACCGATCCATGGTCGATGTTTGTCGCGTTGTT
AGAATAGGAAATGTGACCTTGCGCGAACGACTTCAAGAACTTAACAAGAC
GCCAACTGCTGCGCTGACAGCTGCTCAGATTGTTTCAAGAGGAGGAGACG
ACGGAAAAATATCATCGCTGATTTTGGAAGAAGAACCTACTGCATGTGAT
CCACCCGCTTTTCAACGTGCACAGAAAGTGAAGCAGCTTAAACGGAAACA
TGCAGAGATTAGAAAGGCACAAGCAAAGGATGCAGCAATCGGGAAGCGGA
AAGGAATAGAGACCGACTTCCCATCTGCCGCAGGACGCCTGGTCCGACCG
GAAGGGGATACGGTCATTGATGACGCATCAATTCAAAAACAAATGCAGCA
GGTTCTTGCCAGCGTTGAGATGCAAGAACTGGATGAAGAATCGAGACAAG
AAGAACAGCTAACTGCTGCCGTGGCGTCGAGATTACCAGAGACGGATAGC
GATGAAGATCGCAGAAAGGCGGATGCGGAAAAAGAGTTTGCCCAGGAGAA
TTGGAAAGACGCGGAGAATCACAATGAAGATCTCAGCGATTTGGAAGAAG
AGGATATGCAGATGTACTTTAACACTGAAGAAGAATGCAGAAGAAAAGCT
GTGTTGTGGACAGAGATTAACAAGGATTATCTTGAAAAGCAAGAGCGGTT
AGAAACAATGCGTCGAGAACGACCTGATGACTTTAAACGATTACGGCCGA
CACGCAAGGCGCCCAAGAAGAAGGGCTCGGGTGCGGAGAAGGGTCAGAAA
ACAAGCACTAAAGGGAAGAAAGACGTTGATACCGAACCTCCTGCACCGAA
GCCATCGAAGAAGCTCAATTATGCGAAACTTAAACAGTTGGCTCTTGCGG
CTGGTCAAGAGGTACAAACGCTGTGA
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protein sequence of Ggra6750.t1

>Ggra6750.t1 ID=Ggra6750.t1|Name=Ggra6750.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=542bp
MSTQVQKCSACGSDEIDFDAARGQASCMSCGEVLEQNAIVAEVGFAEDAR
GRSNMVGQHVRADGTSNFASMPGYSARATFTTMLNARHRLRQLASTLKLH
QRHTEAAERLFRLGAERNFHRGRRLANVCCACLYAVCRIEKTPHMLLDFS
DVLETNVYLLGHTFLKFAQVVSLNLPIIDPSLYIHRFASKLEFGDKTNAV
AMTALRILARMQRDWLSHGRRPSSLCGAALMCAAGMHQFHRSMVDVCRVV
RIGNVTLRERLQELNKTPTAALTAAQIVSRGGDDGKISSLILEEEPTACD
PPAFQRAQKVKQLKRKHAEIRKAQAKDAAIGKRKGIETDFPSAAGRLVRP
EGDTVIDDASIQKQMQQVLASVEMQELDEESRQEEQLTAAVASRLPETDS
DEDRRKADAEKEFAQENWKDAENHNEDLSDLEEEDMQMYFNTEEECRRKA
VLWTEINKDYLEKQERLETMRRERPDDFKRLRPTRKAPKKKGSGAEKGQK
TSTKGKKDVDTEPPAPKPSKKLNYAKLKQLALAAGQEVQTL*
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mRNA from alignment at tig00000056_pilon:348710..350335-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6750.t1 ID=Ggra6750.t1|Name=Ggra6750.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1626bp|location=Sequence derived from alignment at tig00000056_pilon:348710..350335- (Gracilaria gracilis GNS1m male)
ATGAGCACTCAAGTGCAAAAATGCTCCGCGTGCGGGAGCGACGAAATCGA
CTTTGATGCCGCACGCGGTCAGGCGTCATGTATGTCATGTGGTGAAGTGC
TCGAGCAAAACGCCATCGTCGCAGAAGTAGGATTCGCCGAAGATGCACGA
GGCCGTTCTAATATGGTCGGACAACATGTACGCGCGGATGGCACATCCAA
CTTTGCATCTATGCCAGGCTATTCCGCGCGAGCTACTTTCACCACGATGC
TCAACGCTCGACATAGGTTGCGACAATTGGCGTCTACTCTCAAATTACAT
CAGCGACATACGGAGGCTGCTGAACGTCTCTTCCGCCTTGGTGCCGAGCG
CAATTTTCACAGAGGCAGACGGCTGGCAAATGTTTGTTGTGCTTGTCTGT
ATGCTGTTTGTCGAATTGAGAAGACTCCACACATGTTGCTCGACTTCTCG
GATGTGCTTGAAACCAATGTTTATTTGCTCGGGCACACGTTTCTCAAGTT
TGCGCAGGTCGTTTCTCTTAATCTGCCTATCATTGACCCAAGTCTTTATA
TCCATCGTTTCGCTAGCAAGCTTGAATTTGGAGATAAAACGAATGCCGTT
GCCATGACTGCGCTCCGAATTCTAGCCCGCATGCAACGTGACTGGTTGAG
CCATGGTAGGAGACCAAGCAGTCTGTGTGGTGCTGCGCTCATGTGTGCAG
CCGGCATGCACCAGTTTCACCGATCCATGGTCGATGTTTGTCGCGTTGTT
AGAATAGGAAATGTGACCTTGCGCGAACGACTTCAAGAACTTAACAAGAC
GCCAACTGCTGCGCTGACAGCTGCTCAGATTGTTTCAAGAGGAGGAGACG
ACGGAAAAATATCATCGCTGATTTTGGAAGAAGAACCTACTGCATGTGAT
CCACCCGCTTTTCAACGTGCACAGAAAGTGAAGCAGCTTAAACGGAAACA
TGCAGAGATTAGAAAGGCACAAGCAAAGGATGCAGCAATCGGGAAGCGGA
AAGGAATAGAGACCGACTTCCCATCTGCCGCAGGACGCCTGGTCCGACCG
GAAGGGGATACGGTCATTGATGACGCATCAATTCAAAAACAAATGCAGCA
GGTTCTTGCCAGCGTTGAGATGCAAGAACTGGATGAAGAATCGAGACAAG
AAGAACAGCTAACTGCTGCCGTGGCGTCGAGATTACCAGAGACGGATAGC
GATGAAGATCGCAGAAAGGCGGATGCGGAAAAAGAGTTTGCCCAGGAGAA
TTGGAAAGACGCGGAGAATCACAATGAAGATCTCAGCGATTTGGAAGAAG
AGGATATGCAGATGTACTTTAACACTGAAGAAGAATGCAGAAGAAAAGCT
GTGTTGTGGACAGAGATTAACAAGGATTATCTTGAAAAGCAAGAGCGGTT
AGAAACAATGCGTCGAGAACGACCTGATGACTTTAAACGATTACGGCCGA
CACGCAAGGCGCCCAAGAAGAAGGGCTCGGGTGCGGAGAAGGGTCAGAAA
ACAAGCACTAAAGGGAAGAAAGACGTTGATACCGAACCTCCTGCACCGAA
GCCATCGAAGAAGCTCAATTATGCGAAACTTAAACAGTTGGCTCTTGCGG
CTGGTCAAGAGGTACAAACGCTGTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:348710..350335-

>Ggra6750.t1 ID=Ggra6750.t1|Name=Ggra6750.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1626bp|location=Sequence derived from alignment at tig00000056_pilon:348710..350335- (Gracilaria gracilis GNS1m male)
ATGAGCACTCAAGTGCAAAAATGCTCCGCGTGCGGGAGCGACGAAATCGA
CTTTGATGCCGCACGCGGTCAGGCGTCATGTATGTCATGTGGTGAAGTGC
TCGAGCAAAACGCCATCGTCGCAGAAGTAGGATTCGCCGAAGATGCACGA
GGCCGTTCTAATATGGTCGGACAACATGTACGCGCGGATGGCACATCCAA
CTTTGCATCTATGCCAGGCTATTCCGCGCGAGCTACTTTCACCACGATGC
TCAACGCTCGACATAGGTTGCGACAATTGGCGTCTACTCTCAAATTACAT
CAGCGACATACGGAGGCTGCTGAACGTCTCTTCCGCCTTGGTGCCGAGCG
CAATTTTCACAGAGGCAGACGGCTGGCAAATGTTTGTTGTGCTTGTCTGT
ATGCTGTTTGTCGAATTGAGAAGACTCCACACATGTTGCTCGACTTCTCG
GATGTGCTTGAAACCAATGTTTATTTGCTCGGGCACACGTTTCTCAAGTT
TGCGCAGGTCGTTTCTCTTAATCTGCCTATCATTGACCCAAGTCTTTATA
TCCATCGTTTCGCTAGCAAGCTTGAATTTGGAGATAAAACGAATGCCGTT
GCCATGACTGCGCTCCGAATTCTAGCCCGCATGCAACGTGACTGGTTGAG
CCATGGTAGGAGACCAAGCAGTCTGTGTGGTGCTGCGCTCATGTGTGCAG
CCGGCATGCACCAGTTTCACCGATCCATGGTCGATGTTTGTCGCGTTGTT
AGAATAGGAAATGTGACCTTGCGCGAACGACTTCAAGAACTTAACAAGAC
GCCAACTGCTGCGCTGACAGCTGCTCAGATTGTTTCAAGAGGAGGAGACG
ACGGAAAAATATCATCGCTGATTTTGGAAGAAGAACCTACTGCATGTGAT
CCACCCGCTTTTCAACGTGCACAGAAAGTGAAGCAGCTTAAACGGAAACA
TGCAGAGATTAGAAAGGCACAAGCAAAGGATGCAGCAATCGGGAAGCGGA
AAGGAATAGAGACCGACTTCCCATCTGCCGCAGGACGCCTGGTCCGACCG
GAAGGGGATACGGTCATTGATGACGCATCAATTCAAAAACAAATGCAGCA
GGTTCTTGCCAGCGTTGAGATGCAAGAACTGGATGAAGAATCGAGACAAG
AAGAACAGCTAACTGCTGCCGTGGCGTCGAGATTACCAGAGACGGATAGC
GATGAAGATCGCAGAAAGGCGGATGCGGAAAAAGAGTTTGCCCAGGAGAA
TTGGAAAGACGCGGAGAATCACAATGAAGATCTCAGCGATTTGGAAGAAG
AGGATATGCAGATGTACTTTAACACTGAAGAAGAATGCAGAAGAAAAGCT
GTGTTGTGGACAGAGATTAACAAGGATTATCTTGAAAAGCAAGAGCGGTT
AGAAACAATGCGTCGAGAACGACCTGATGACTTTAAACGATTACGGCCGA
CACGCAAGGCGCCCAAGAAGAAGGGCTCGGGTGCGGAGAAGGGTCAGAAA
ACAAGCACTAAAGGGAAGAAAGACGTTGATACCGAACCTCCTGCACCGAA
GCCATCGAAGAAGCTCAATTATGCGAAACTTAAACAGTTGGCTCTTGCGG
CTGGTCAAGAGGTACAAACGCTGTGA
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