Ggra6737.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6737.t1
Unique Name	Ggra6737.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	336

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:323529..324536 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1487953.JMKF01000059_gene4932
PFAMs	DUF1818
Max annot lvl	1117\|Cyanobacteria
Evalue	1.85e-12
EggNOG OGs	2CK5Z@1\|root,316YV@2\|Bacteria,1G6Q6@1117\|Cyanobacteria,1HBJP@1150\|Oscillatoriales
Description	Domain of unknown function (DUF1818)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6737	Ggra6737	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 323529..324536 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6737.t1.start1	Ggra6737.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 323529..323531 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6737.t1.CDS1	Ggra6737.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 323529..324536 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6737.t1.exon1	Ggra6737.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 323529..324536 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6737.t1.stop1	Ggra6737.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 324534..324536 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6737.t1	Ggra6737.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 323529..324536 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:323529..324536+
coding sequence from alignment at tig00000056_pilon:323529..324536+

mRNA sequence

>Ggra6737.t1 ID=Ggra6737.t1|Name=Ggra6737.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp
MVNAFLAPAPVASRARRLTPAVCPRAARGAPVRWSCCASPLDPVEAAVAD
GETLRQQLAAVSDSRRKQAERTNEALMNMAAQISAITAKLRADAGMPPVA
DPPPPSAAVDRAVATPSVVSEDDASSAADEPYMDPKNFGYESTAGWQVLE
ASEHLPENERDLQFRIECDMHGCSLIEVKRDAPPGPGVRHNFIQSGVGFR
VGFDPEAPKSFCAMVGNDQWLVALSYDEIRHFKRLCLSLQKRMDRIGRGE
EDPPVKKPAVRRSGDGMFNMRVARAGLDCSVEHESKLVWAQALGQPASGK
YCIRAIFMEGRQSECFWASETVPNLLAALNKLGIE*

spliced messenger RNA

>Ggra6737.t1 ID=Ggra6737.t1|Name=Ggra6737.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000056_pilon:323529..324536+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAACGCGTTCTTGgcgcccgcgcccgtggcgtcgcgcgcgcggcg
gctcaccccggccgtctgcccgcgcgcggcgcgcggcgcgcccgtgcgct
ggagctgctgcgcgtcgccgcTGGACCCCGTGGAGGCGGCCGTCGCCGAT
GGCGAGACGCTTCGCCAGCAGCTGGCCGCCGTTTCCGACTCGCGGCGCAA
GCAGGCCGAGCGCACCAATGAGGCGCTCATGAACATGGCCGCGCAGATCT
CCGCCATTACCGCCAAGCTGCGCGCCGACGCTGGCATGCCGCCCGTGGCT
GACCCCCCGCCGCCTAGCGCCGCTGTCGACCGCGCTGTTGCCACCCCGTC
GGTTGTTTCGGAAGATGACGCTTCTTCGGCCGCCGATGAGCCGTATATGG
ACCCGAAGAACTTTGGATACGAGTCCACGGCGGGCTGGCAGGTGCTGGAG
GCTAGTGAGCACTTGCCGGAGAATGAGCGTGATTTGCAGTTCCGTATTGA
GTGTGACATGCATGGCTGCTCTTTGATTGAGGTCAAACGTGATGCTCCCC
CTGGGCCGGGCGTTCGCCACAACTTCATTCAATCCGGTGTCGGCTTTCGC
GTCGGCTTTGACCCGGAGGCGCCGAAAAGTTTCTGCGCCATGGTTGGAAA
CGATCAGTGGCTCGTTGCGCTTAGCTACGATGAGATTCGTCACTTCAAGC
GCCTTTGCCTTTCGTTGCAGAAGCGCATGGATCGTATTGGACGCGGCGAA
GAGGACCCTCCCGTCAAGAAGCCGGCTGTGAGGAGGAGTGGCGATGGCAT
GTTCAATATGAGGGTTGCTAGAGCCGGTTTGGATTGCTCCGTTGAGCATG
AATCTAAGCTTGTCTGGGCTCAGGCACTTGGGCAGCCGGCTTCCGGCAAG
TATTGTATCAGGGCTATCTTTATGGAGGGCCGACAGAGTGAATGTTTCTG
GGCTAGTGAGACCGTGCCTAATCTACTGGCCGCCTTGAATAAGTTAGGAA
TTGAATAA

protein sequence of Ggra6737.t1

>Ggra6737.t1 ID=Ggra6737.t1|Name=Ggra6737.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=336bp
MVNAFLAPAPVASRARRLTPAVCPRAARGAPVRWSCCASPLDPVEAAVAD
GETLRQQLAAVSDSRRKQAERTNEALMNMAAQISAITAKLRADAGMPPVA
DPPPPSAAVDRAVATPSVVSEDDASSAADEPYMDPKNFGYESTAGWQVLE
ASEHLPENERDLQFRIECDMHGCSLIEVKRDAPPGPGVRHNFIQSGVGFR
VGFDPEAPKSFCAMVGNDQWLVALSYDEIRHFKRLCLSLQKRMDRIGRGE
EDPPVKKPAVRRSGDGMFNMRVARAGLDCSVEHESKLVWAQALGQPASGK
YCIRAIFMEGRQSECFWASETVPNLLAALNKLGIE*

mRNA from alignment at tig00000056_pilon:323529..324536+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6737.t1 ID=Ggra6737.t1|Name=Ggra6737.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000056_pilon:323529..324536+ (Gracilaria gracilis GNS1m male)
ATGGTGAACGCGTTCTTGgcgcccgcgcccgtggcgtcgcgcgcgcggcg
gctcaccccggccgtctgcccgcgcgcggcgcgcggcgcgcccgtgcgct
ggagctgctgcgcgtcgccgcTGGACCCCGTGGAGGCGGCCGTCGCCGAT
GGCGAGACGCTTCGCCAGCAGCTGGCCGCCGTTTCCGACTCGCGGCGCAA
GCAGGCCGAGCGCACCAATGAGGCGCTCATGAACATGGCCGCGCAGATCT
CCGCCATTACCGCCAAGCTGCGCGCCGACGCTGGCATGCCGCCCGTGGCT
GACCCCCCGCCGCCTAGCGCCGCTGTCGACCGCGCTGTTGCCACCCCGTC
GGTTGTTTCGGAAGATGACGCTTCTTCGGCCGCCGATGAGCCGTATATGG
ACCCGAAGAACTTTGGATACGAGTCCACGGCGGGCTGGCAGGTGCTGGAG
GCTAGTGAGCACTTGCCGGAGAATGAGCGTGATTTGCAGTTCCGTATTGA
GTGTGACATGCATGGCTGCTCTTTGATTGAGGTCAAACGTGATGCTCCCC
CTGGGCCGGGCGTTCGCCACAACTTCATTCAATCCGGTGTCGGCTTTCGC
GTCGGCTTTGACCCGGAGGCGCCGAAAAGTTTCTGCGCCATGGTTGGAAA
CGATCAGTGGCTCGTTGCGCTTAGCTACGATGAGATTCGTCACTTCAAGC
GCCTTTGCCTTTCGTTGCAGAAGCGCATGGATCGTATTGGACGCGGCGAA
GAGGACCCTCCCGTCAAGAAGCCGGCTGTGAGGAGGAGTGGCGATGGCAT
GTTCAATATGAGGGTTGCTAGAGCCGGTTTGGATTGCTCCGTTGAGCATG
AATCTAAGCTTGTCTGGGCTCAGGCACTTGGGCAGCCGGCTTCCGGCAAG
TATTGTATCAGGGCTATCTTTATGGAGGGCCGACAGAGTGAATGTTTCTG
GGCTAGTGAGACCGTGCCTAATCTACTGGCCGCCTTGAATAAGTTAGGAA
TTGAATAA

Coding sequence (CDS) from alignment at tig00000056_pilon:323529..324536+

>Ggra6737.t1 ID=Ggra6737.t1|Name=Ggra6737.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00000056_pilon:323529..324536+ (Gracilaria gracilis GNS1m male)
ATGGTGAACGCGTTCTTGgcgcccgcgcccgtggcgtcgcgcgcgcggcg
gctcaccccggccgtctgcccgcgcgcggcgcgcggcgcgcccgtgcgct
ggagctgctgcgcgtcgccgcTGGACCCCGTGGAGGCGGCCGTCGCCGAT
GGCGAGACGCTTCGCCAGCAGCTGGCCGCCGTTTCCGACTCGCGGCGCAA
GCAGGCCGAGCGCACCAATGAGGCGCTCATGAACATGGCCGCGCAGATCT
CCGCCATTACCGCCAAGCTGCGCGCCGACGCTGGCATGCCGCCCGTGGCT
GACCCCCCGCCGCCTAGCGCCGCTGTCGACCGCGCTGTTGCCACCCCGTC
GGTTGTTTCGGAAGATGACGCTTCTTCGGCCGCCGATGAGCCGTATATGG
ACCCGAAGAACTTTGGATACGAGTCCACGGCGGGCTGGCAGGTGCTGGAG
GCTAGTGAGCACTTGCCGGAGAATGAGCGTGATTTGCAGTTCCGTATTGA
GTGTGACATGCATGGCTGCTCTTTGATTGAGGTCAAACGTGATGCTCCCC
CTGGGCCGGGCGTTCGCCACAACTTCATTCAATCCGGTGTCGGCTTTCGC
GTCGGCTTTGACCCGGAGGCGCCGAAAAGTTTCTGCGCCATGGTTGGAAA
CGATCAGTGGCTCGTTGCGCTTAGCTACGATGAGATTCGTCACTTCAAGC
GCCTTTGCCTTTCGTTGCAGAAGCGCATGGATCGTATTGGACGCGGCGAA
GAGGACCCTCCCGTCAAGAAGCCGGCTGTGAGGAGGAGTGGCGATGGCAT
GTTCAATATGAGGGTTGCTAGAGCCGGTTTGGATTGCTCCGTTGAGCATG
AATCTAAGCTTGTCTGGGCTCAGGCACTTGGGCAGCCGGCTTCCGGCAAG
TATTGTATCAGGGCTATCTTTATGGAGGGCCGACAGAGTGAATGTTTCTG
GGCTAGTGAGACCGTGCCTAATCTACTGGCCGCCTTGAATAAGTTAGGAA
TTGAATAA