Ggra6734.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6734.t1
Unique NameGgra6734.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length283
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:319511..320359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD10207
PFAMsZip
Max annot lvl2759|Eukaryota
KEGG koko:K14709
KEGG TC2.A.5.1,2.A.5.3,2.A.5.6
Evalue3.26e-18
EggNOG OGsKOG1558@1|root,KOG1558@2759|Eukaryota
Descriptionzinc ion transmembrane transporter activity
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6734Ggra6734Gracilaria gracilis GNS1m malegenetig00000056_pilon 319511..320359 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6734.t1.start1Ggra6734.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 319511..319513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6734.t1.CDS1Ggra6734.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 319511..320359 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6734.t1.exon1Ggra6734.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 319511..320359 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6734.t1.stop1Ggra6734.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 320357..320359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6734.t1Ggra6734.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 319511..320359 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6734.t1 ID=Ggra6734.t1|Name=Ggra6734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=283bp
MDAVSCRTATLTILSVFLLALSGSLAPLLLASPAYHVRVLRLGNAFSAGF
LVAAALVHILPSAMIALSQNVSTDYPLGGLLTLVGVCSVFMLDVLARRIQ
SSGKALPMHSHTAFSRAHSPTVAVVLAASLSFHSFLEGVSIGVSSLDASS
FKALSIAIIVHKLFAALALGSALTASVDGDSKLQKQAVYMCIFFASVTPL
GALSGIALLGIFPDRIAILLMSALNLLSAGVFLYVATVELLADEFRYASL
HSYTDLNPDDSLPSMAVFVLAAGAMSLLALWT*
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spliced messenger RNA

>Ggra6734.t1 ID=Ggra6734.t1|Name=Ggra6734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000056_pilon:319511..320359+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCAGTTTCTTGCCGCACCGCCACTCTCACCATCTTGTCCGTGTT
CTTGCTCGCGCTTTCCGGCTCTCTGGCGCCGCTCTTGCTTGCTTCGCCTG
CTTATCACGTGCGCGTTCTGCGTCTGGGAAATGCCTTCTCCGCCGGCTTC
TTGGTCGCGGCCGCGCTGGTTCATATCTTGCCTTCCGCCATGATCGCGCT
TTCGCAGAATGTTTCCACAGACTATCCCCTGGGTGGCTTGCTCACTTTGG
TTGGTGTGTGTTCGGTCTTCATGCTGGATGTGTTGGCACGTCGCATTCAG
AGCAGTGGCAAGGCGCTTCCGATGCATTCGCACACCGCCTTTTCGCGCGC
GCATTCGCCCACAGTTGCCGTTGTTCTCGCCGCCTCCCTTTCGTTCCACT
CCTTCTTGGAAGGCGTGTCAATAGGCGTCAGTTCGTTGGATGCTTCGTCA
TTCAAGGCGCTTTCAATCGCAATCATAGTACACAAGCTTTTCGCCGCCCT
GGCACTCGGCTCAGCACTCACCGCCTCAGTCGACGGCGACTCGAAGCTTC
AAAAGCAAGCCGTGTACATGTGCATTTTCTTCGCAAGCGTCACCCCGCTG
GGTGCGTTGAGTGGTATCGCGTTGCTCGGTATCTTCCCGGATCGTATCGC
CATTTTGCTCATGTCGGCCCTTAATCTACTTTCTGCCGGTGTGTTTCTGT
ACGTCGCAACGGTGGAATTGCTCGCAGATGAATTCCGTTATGCGTCGCTG
CATAGCTACACTGACCTCAACCCAGACGATTCACTGCCTAGTATGGCTGT
TTTTGTTCTTGCGGCTGGCGCAATGAGCTTACTCGCTCTGTGGACATAG
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protein sequence of Ggra6734.t1

>Ggra6734.t1 ID=Ggra6734.t1|Name=Ggra6734.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=283bp
MDAVSCRTATLTILSVFLLALSGSLAPLLLASPAYHVRVLRLGNAFSAGF
LVAAALVHILPSAMIALSQNVSTDYPLGGLLTLVGVCSVFMLDVLARRIQ
SSGKALPMHSHTAFSRAHSPTVAVVLAASLSFHSFLEGVSIGVSSLDASS
FKALSIAIIVHKLFAALALGSALTASVDGDSKLQKQAVYMCIFFASVTPL
GALSGIALLGIFPDRIAILLMSALNLLSAGVFLYVATVELLADEFRYASL
HSYTDLNPDDSLPSMAVFVLAAGAMSLLALWT*
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mRNA from alignment at tig00000056_pilon:319511..320359+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6734.t1 ID=Ggra6734.t1|Name=Ggra6734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000056_pilon:319511..320359+ (Gracilaria gracilis GNS1m male)
ATGGACGCAGTTTCTTGCCGCACCGCCACTCTCACCATCTTGTCCGTGTT
CTTGCTCGCGCTTTCCGGCTCTCTGGCGCCGCTCTTGCTTGCTTCGCCTG
CTTATCACGTGCGCGTTCTGCGTCTGGGAAATGCCTTCTCCGCCGGCTTC
TTGGTCGCGGCCGCGCTGGTTCATATCTTGCCTTCCGCCATGATCGCGCT
TTCGCAGAATGTTTCCACAGACTATCCCCTGGGTGGCTTGCTCACTTTGG
TTGGTGTGTGTTCGGTCTTCATGCTGGATGTGTTGGCACGTCGCATTCAG
AGCAGTGGCAAGGCGCTTCCGATGCATTCGCACACCGCCTTTTCGCGCGC
GCATTCGCCCACAGTTGCCGTTGTTCTCGCCGCCTCCCTTTCGTTCCACT
CCTTCTTGGAAGGCGTGTCAATAGGCGTCAGTTCGTTGGATGCTTCGTCA
TTCAAGGCGCTTTCAATCGCAATCATAGTACACAAGCTTTTCGCCGCCCT
GGCACTCGGCTCAGCACTCACCGCCTCAGTCGACGGCGACTCGAAGCTTC
AAAAGCAAGCCGTGTACATGTGCATTTTCTTCGCAAGCGTCACCCCGCTG
GGTGCGTTGAGTGGTATCGCGTTGCTCGGTATCTTCCCGGATCGTATCGC
CATTTTGCTCATGTCGGCCCTTAATCTACTTTCTGCCGGTGTGTTTCTGT
ACGTCGCAACGGTGGAATTGCTCGCAGATGAATTCCGTTATGCGTCGCTG
CATAGCTACACTGACCTCAACCCAGACGATTCACTGCCTAGTATGGCTGT
TTTTGTTCTTGCGGCTGGCGCAATGAGCTTACTCGCTCTGTGGACATAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:319511..320359+

>Ggra6734.t1 ID=Ggra6734.t1|Name=Ggra6734.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=849bp|location=Sequence derived from alignment at tig00000056_pilon:319511..320359+ (Gracilaria gracilis GNS1m male)
ATGGACGCAGTTTCTTGCCGCACCGCCACTCTCACCATCTTGTCCGTGTT
CTTGCTCGCGCTTTCCGGCTCTCTGGCGCCGCTCTTGCTTGCTTCGCCTG
CTTATCACGTGCGCGTTCTGCGTCTGGGAAATGCCTTCTCCGCCGGCTTC
TTGGTCGCGGCCGCGCTGGTTCATATCTTGCCTTCCGCCATGATCGCGCT
TTCGCAGAATGTTTCCACAGACTATCCCCTGGGTGGCTTGCTCACTTTGG
TTGGTGTGTGTTCGGTCTTCATGCTGGATGTGTTGGCACGTCGCATTCAG
AGCAGTGGCAAGGCGCTTCCGATGCATTCGCACACCGCCTTTTCGCGCGC
GCATTCGCCCACAGTTGCCGTTGTTCTCGCCGCCTCCCTTTCGTTCCACT
CCTTCTTGGAAGGCGTGTCAATAGGCGTCAGTTCGTTGGATGCTTCGTCA
TTCAAGGCGCTTTCAATCGCAATCATAGTACACAAGCTTTTCGCCGCCCT
GGCACTCGGCTCAGCACTCACCGCCTCAGTCGACGGCGACTCGAAGCTTC
AAAAGCAAGCCGTGTACATGTGCATTTTCTTCGCAAGCGTCACCCCGCTG
GGTGCGTTGAGTGGTATCGCGTTGCTCGGTATCTTCCCGGATCGTATCGC
CATTTTGCTCATGTCGGCCCTTAATCTACTTTCTGCCGGTGTGTTTCTGT
ACGTCGCAACGGTGGAATTGCTCGCAGATGAATTCCGTTATGCGTCGCTG
CATAGCTACACTGACCTCAACCCAGACGATTCACTGCCTAGTATGGCTGT
TTTTGTTCTTGCGGCTGGCGCAATGAGCTTACTCGCTCTGTGGACATAG
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