Ggra6687.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6687.t1
Unique NameGgra6687.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:196413..197648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706844.1
Preferred nameEXOSC9
PFAMsRNase_PH,RNase_PH_C
Max annot lvl2759|Eukaryota
KEGG koko:K03678,ko:K10397,ko:K12586,ko:K12589
KEGG Pathwayko03018,map03018
KEGG ModuleM00390,M00391
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0001085,GO:0001102,GO:0001558,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006955,GO:0008134,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0030307,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032991,GO:0033613,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0040008,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045927,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1905354,GO:2000112,GO:2001141
Evalue2.38e-60
EggNOG OGsCOG2123@1|root,KOG1614@2759|Eukaryota
DescriptionU1 snRNA 3'-end processing
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6687Ggra6687Gracilaria gracilis GNS1m malegenetig00000056_pilon 196413..197648 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6687.t1.start1Ggra6687.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 196413..196415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6687.t1.CDS1Ggra6687.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 196413..197648 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6687.t1.exon1Ggra6687.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 196413..197648 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6687.t1.stop1Ggra6687.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 197646..197648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6687.t1Ggra6687.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 196413..197648 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6687.t1 ID=Ggra6687.t1|Name=Ggra6687.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=412bp
MKEELISTSEKRFTTDCVSANCRSDGRRNSEARKANISLGPNWGFAEVSF
DGTRAVASTTIDAITPPPDRPSEGNITISVQLSPTASEPAARDSLFRNSG
AFLETRICIESFIRDSRSVDTEALCILAGVKVWSVHVDVDIINDDGNCTD
VCMLAVMASLMHARRPDVSVTGKEVRIYSMDEREPVPLPIHHVPLSMTFA
LFGAGKPYDSDTVVLDPVKIEELASGGSISFAFNSQGEVCGVYKAGGLPM
HLVSFDECTSLAANRARELTGVLKTALKDASAQHPLSTVRPMLVDPEPVA
MLVSKDRGPDQLSANASTWNATPVLDTAPPDLDAIEVERRSRPATDGDVV
ESVFGKKEFNEVREEKDVVMNEDNKMVVEKLLQSDSDSSDDDLESAVIPK
KERKTRKNRRR*
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spliced messenger RNA

>Ggra6687.t1 ID=Ggra6687.t1|Name=Ggra6687.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000056_pilon:196413..197648+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGAAGAGTTAATATCCACGTCCGAAAAGAGATTCACAACCGACTG
CGTCAGTGCCAACTGCAGATCAGATGGCCGCCGAAACTCTGAAGCCCGCA
AAGCCAACATATCTCTAGGTCCGAATTGGGGTTTTGCAGAAGTCTCATTT
GACGGCACACGCGCAGTGGCTTCCACAACAATCGATGCGATAACTCCACC
CCCGGATCGCCCTTCAGAGGGCAATATAACCATATCAGTTCAACTGTCAC
CGACTGCATCTGAGCCGGCCGCTCGGGATTCTCTCTTTCGAAACTCGGGC
GCTTTTCTGGAAACTAGAATTTGTATTGAAAGCTTCATCCGCGATTCCCG
ATCCGTTGACACTGAAGCGCTTTGCATACTAGCTGGTGTAAAGGTTTGGA
GTGTTCACGTTGACGTCGATATCATAAATGACGATGGGAACTGTACGGAT
GTCTGCATGCTGGCGGTTATGGCATCTTTGATGCACGCCCGACGCCCCGA
TGTGAGTGTTACAGGGAAAGAAGTCCGAATCTATTCAATGGATGAGCGAG
AGCCTGTACCGCTTCCTATTCATCATGTACCACTTTCTATGACCTTCGCT
CTCTTTGGCGCAGGGAAGCCATACGATTCTGACACGGTTGTACTGGACCC
TGTGAAGATAGAAGAGCTTGCGTCTGGTGGCTCTATATCTTTTGCATTCA
ATTCACAAGGCGAAGTATGTGGTGTCTATAAAGCCGGAGGACTACCAATG
CATCTTGTAAGTTTTGACGAATGCACGAGTTTGGCTGCCAACCGCGCTCG
GGAGCTTACCGGTGTGCTGAAGACAGCACTTAAAGACGCGTCAGCTCAGC
ATCCCCTTTCCACTGTTCGACCGATGTTGGTGGATCCAGAACCTGTTGCC
ATGTTAGTGAGCAAGGACCGTGGCCCCGACCAGCTTTCTGCGAACGCATC
CACATGGAATGCGACTCCCGTTCTGGACACAGCACCTCCGGACCTTGACG
CAATTGAAGTGGAACGTCGTTCTCGACCGGCAACGGACGGTGATGTTGTA
GAAAGCGTATTCGGGAAGAAAGAATTCAATGAAGTCAGAGAGGAGAAAGA
CGTGGTGATGAATGAAGATAACAAGATGGTAGTGGAAAAGCTGCTCCAGT
CTGACAGCGATTCATCAGATGATGATTTAGAATCCGCTGTGATCCCCAAA
AAGGAACGCAAAACTCGAAAGAATAGAAGACGATGA
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protein sequence of Ggra6687.t1

>Ggra6687.t1 ID=Ggra6687.t1|Name=Ggra6687.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=412bp
MKEELISTSEKRFTTDCVSANCRSDGRRNSEARKANISLGPNWGFAEVSF
DGTRAVASTTIDAITPPPDRPSEGNITISVQLSPTASEPAARDSLFRNSG
AFLETRICIESFIRDSRSVDTEALCILAGVKVWSVHVDVDIINDDGNCTD
VCMLAVMASLMHARRPDVSVTGKEVRIYSMDEREPVPLPIHHVPLSMTFA
LFGAGKPYDSDTVVLDPVKIEELASGGSISFAFNSQGEVCGVYKAGGLPM
HLVSFDECTSLAANRARELTGVLKTALKDASAQHPLSTVRPMLVDPEPVA
MLVSKDRGPDQLSANASTWNATPVLDTAPPDLDAIEVERRSRPATDGDVV
ESVFGKKEFNEVREEKDVVMNEDNKMVVEKLLQSDSDSSDDDLESAVIPK
KERKTRKNRRR*
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mRNA from alignment at tig00000056_pilon:196413..197648+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6687.t1 ID=Ggra6687.t1|Name=Ggra6687.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000056_pilon:196413..197648+ (Gracilaria gracilis GNS1m male)
ATGAAAGAAGAGTTAATATCCACGTCCGAAAAGAGATTCACAACCGACTG
CGTCAGTGCCAACTGCAGATCAGATGGCCGCCGAAACTCTGAAGCCCGCA
AAGCCAACATATCTCTAGGTCCGAATTGGGGTTTTGCAGAAGTCTCATTT
GACGGCACACGCGCAGTGGCTTCCACAACAATCGATGCGATAACTCCACC
CCCGGATCGCCCTTCAGAGGGCAATATAACCATATCAGTTCAACTGTCAC
CGACTGCATCTGAGCCGGCCGCTCGGGATTCTCTCTTTCGAAACTCGGGC
GCTTTTCTGGAAACTAGAATTTGTATTGAAAGCTTCATCCGCGATTCCCG
ATCCGTTGACACTGAAGCGCTTTGCATACTAGCTGGTGTAAAGGTTTGGA
GTGTTCACGTTGACGTCGATATCATAAATGACGATGGGAACTGTACGGAT
GTCTGCATGCTGGCGGTTATGGCATCTTTGATGCACGCCCGACGCCCCGA
TGTGAGTGTTACAGGGAAAGAAGTCCGAATCTATTCAATGGATGAGCGAG
AGCCTGTACCGCTTCCTATTCATCATGTACCACTTTCTATGACCTTCGCT
CTCTTTGGCGCAGGGAAGCCATACGATTCTGACACGGTTGTACTGGACCC
TGTGAAGATAGAAGAGCTTGCGTCTGGTGGCTCTATATCTTTTGCATTCA
ATTCACAAGGCGAAGTATGTGGTGTCTATAAAGCCGGAGGACTACCAATG
CATCTTGTAAGTTTTGACGAATGCACGAGTTTGGCTGCCAACCGCGCTCG
GGAGCTTACCGGTGTGCTGAAGACAGCACTTAAAGACGCGTCAGCTCAGC
ATCCCCTTTCCACTGTTCGACCGATGTTGGTGGATCCAGAACCTGTTGCC
ATGTTAGTGAGCAAGGACCGTGGCCCCGACCAGCTTTCTGCGAACGCATC
CACATGGAATGCGACTCCCGTTCTGGACACAGCACCTCCGGACCTTGACG
CAATTGAAGTGGAACGTCGTTCTCGACCGGCAACGGACGGTGATGTTGTA
GAAAGCGTATTCGGGAAGAAAGAATTCAATGAAGTCAGAGAGGAGAAAGA
CGTGGTGATGAATGAAGATAACAAGATGGTAGTGGAAAAGCTGCTCCAGT
CTGACAGCGATTCATCAGATGATGATTTAGAATCCGCTGTGATCCCCAAA
AAGGAACGCAAAACTCGAAAGAATAGAAGACGATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:196413..197648+

>Ggra6687.t1 ID=Ggra6687.t1|Name=Ggra6687.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000056_pilon:196413..197648+ (Gracilaria gracilis GNS1m male)
ATGAAAGAAGAGTTAATATCCACGTCCGAAAAGAGATTCACAACCGACTG
CGTCAGTGCCAACTGCAGATCAGATGGCCGCCGAAACTCTGAAGCCCGCA
AAGCCAACATATCTCTAGGTCCGAATTGGGGTTTTGCAGAAGTCTCATTT
GACGGCACACGCGCAGTGGCTTCCACAACAATCGATGCGATAACTCCACC
CCCGGATCGCCCTTCAGAGGGCAATATAACCATATCAGTTCAACTGTCAC
CGACTGCATCTGAGCCGGCCGCTCGGGATTCTCTCTTTCGAAACTCGGGC
GCTTTTCTGGAAACTAGAATTTGTATTGAAAGCTTCATCCGCGATTCCCG
ATCCGTTGACACTGAAGCGCTTTGCATACTAGCTGGTGTAAAGGTTTGGA
GTGTTCACGTTGACGTCGATATCATAAATGACGATGGGAACTGTACGGAT
GTCTGCATGCTGGCGGTTATGGCATCTTTGATGCACGCCCGACGCCCCGA
TGTGAGTGTTACAGGGAAAGAAGTCCGAATCTATTCAATGGATGAGCGAG
AGCCTGTACCGCTTCCTATTCATCATGTACCACTTTCTATGACCTTCGCT
CTCTTTGGCGCAGGGAAGCCATACGATTCTGACACGGTTGTACTGGACCC
TGTGAAGATAGAAGAGCTTGCGTCTGGTGGCTCTATATCTTTTGCATTCA
ATTCACAAGGCGAAGTATGTGGTGTCTATAAAGCCGGAGGACTACCAATG
CATCTTGTAAGTTTTGACGAATGCACGAGTTTGGCTGCCAACCGCGCTCG
GGAGCTTACCGGTGTGCTGAAGACAGCACTTAAAGACGCGTCAGCTCAGC
ATCCCCTTTCCACTGTTCGACCGATGTTGGTGGATCCAGAACCTGTTGCC
ATGTTAGTGAGCAAGGACCGTGGCCCCGACCAGCTTTCTGCGAACGCATC
CACATGGAATGCGACTCCCGTTCTGGACACAGCACCTCCGGACCTTGACG
CAATTGAAGTGGAACGTCGTTCTCGACCGGCAACGGACGGTGATGTTGTA
GAAAGCGTATTCGGGAAGAAAGAATTCAATGAAGTCAGAGAGGAGAAAGA
CGTGGTGATGAATGAAGATAACAAGATGGTAGTGGAAAAGCTGCTCCAGT
CTGACAGCGATTCATCAGATGATGATTTAGAATCCGCTGTGATCCCCAAA
AAGGAACGCAAAACTCGAAAGAATAGAAGACGATGA
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