Ggra6662.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6662.t2
Unique NameGgra6662.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length476
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:57658..59085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008812340.1
PFAMsPCI
Max annot lvl35493|Streptophyta
KEGG koko:K12177
GOsGO:0000338,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010389,GO:0010564,GO:0010971,GO:0019538,GO:0019941,GO:0030163,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045787,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051603,GO:0051726,GO:0065007,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751
Evalue3.39e-37
EggNOG OGsKOG2582@1|root,KOG2582@2759|Eukaryota,37SVY@33090|Viridiplantae,3G9TU@35493|Streptophyta,3KXH0@4447|Liliopsida
DescriptionCOP9 signalosome complex subunit 3
COG categoryOT
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6662Ggra6662Gracilaria gracilis GNS1m malegenetig00000056_pilon 57658..59085 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6662.t2.start1Ggra6662.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 57658..57660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6662.t2.CDS1Ggra6662.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 57658..59085 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6662.t2.exon1Ggra6662.t2.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 57658..59085 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6662.t2.stop1Ggra6662.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 59083..59085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6662.t2Ggra6662.t2Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 57658..59085 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6662.t2 ID=Ggra6662.t2|Name=Ggra6662.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=476bp
MEPEPSAPAARVAHNHPNQNHPQRISSLPDALVALKQHVLPPSLQPDALR
ASHDLLARTVDAVNTADVTTLHAARAQLHPLHHFLAYVSTLHAALAAVDA
KSPSVPHLLTEFVQLVRCTPASSALHAAHRWIGACRHAARLVVDTRNLPG
AMALIRPLRIAADKLATSPDCIVPIHADFLAVCLQAKCYRLAASWLRERR
RLRIDPVTAVQASDVHLVYHYAAVVFIGVKDYPAALQCCRLALAVPAPTP
GPFFQVAVSTFKYYMLLHLLVVGKAPQPFKFSSYQLSRLRNLTSEYAELA
AAYERMDRTQTQHVFESNRHAFEKHGNLGVVKQVMRTLTDALIERLTNSF
VTMKIEDVANRLGYSDQQEVHDVIVRMIEECKICARIDDRKRVVRLVDDG
SRVDEGLFAQVSGSLMQQSLQVLQRVDEFREKLQSDPTYVDKTMTSNRSQ
RRGMGGSSSSAKRSDAELMRLSGRA*
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spliced messenger RNA

>Ggra6662.t2 ID=Ggra6662.t2|Name=Ggra6662.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000056_pilon:57658..59085+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCCGAGCCATCGGCGCCCGCGGCGCGCGTGGCGCACAATCACCC
CAACCAGAACCACCCGCAGCGCATCTCGTCGCTGCCCGACGCGCTGGTGG
CGCTCAAGCAGCATGTGCTGCCGCCGTCTCTGCAGCCCGACGCGCTGCGC
GCGTCGCACGACCTGCTGGCCAGGACCGTGGACGCCGTCAACACCGCTGA
CGTAACCACGCTGCACGCCGCGCGCGCGCAGCTTCACCCGCTGCACCACT
TCCTGGCGTACGTCTCCACGCTGCACGCCGCGCTGGCCGCCGTGGACGCC
AAGTCGCCCTCCGTGCCGCACCTGTTGACCGAGTTTGTGCAGCTGGTGCG
ATGCACGCCTGCGTCCAGCGCCTTGCATGCCGCGCACCGATGGATCGGCG
CCTGTCGCCATGCCGCGCGACTTGTCGTCGATACTAGGAATCTTCCTGGC
GCAATGGCGTTGATCCGACCTCTGCGAATCGCCGCCGACAAGCTCGCTAC
CTCGCCGGATTGCATTGTGCCCATTCATGCTGATTTTCTTGCCGTCTGCT
TGCAGGCAAAGTGCTATCGGTTGGCCGCGTCGTGGCTGCGCGAGCGCAGA
CGGCTGCGCATTGACCCTGTTACCGCTGTTCAGGCTTCGGATGTACATCT
TGTGTATCATTATGCGGCTGTTGTGTTCATCGGCGTCAAGGACTATCCCG
CCGCCTTGCAGTGCTGTCGGCTTGCGCTGGCGGTGCCGGCGCCCACGCCA
GGGCCCTTCTTCCAGGTGGCGGTGAGCACTTTCAAGTACTACATGTTGCT
GCATCTGTTGGTGGTGGGAAAGGCGCCGCAGCCTTTCAAGTTCAGCTCGT
ATCAACTGTCGCGGCTGCGAAACTTGACGTCGGAGTACGCTGAGCTTGCT
GCCGCGTACGAGCGCATGGATCGCACGCAGACGCAGCACGTGTTCGAATC
GAACCGGCACGCGTTTGAGAAGCACGGCAATCTGGGCGTGGTTAAACAGG
TGATGCGAACTCTAACAGACGCGCTAATTGAACGGTTAACCAACTCGTTT
GTAACCATGAAGATAGAAGACGTGGCGAATCGCTTGGGCTATTCGGACCA
ACAGGAGGTGCATGACGTGATTGTGCGCATGATAGAGGAATGCAAGATCT
GCGCTCGTATCGACGATCGAAAGCGTGTGGTGCGACTGGTTGACGATGGC
AGTCGCGTGGATGAGGGGCTGTTTGCGCAGGTTTCAGGCAGTTTGATGCA
ACAGAGCTTGCAGGTGTTGCAGAGAGTGGACGAGTTTCGAGAAAAACTGC
AAAGCGACCCGACGTACGTGGACAAGACGATGACAAGCAATCGCAGTCAG
AGAAGAGGCATGGGTGGGTCGTCGTCTTCGGCAAAGCGGTCGGACGCGGA
ATTGATGCGATTGAGTGGGAGAGCATGA
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protein sequence of Ggra6662.t2

>Ggra6662.t2 ID=Ggra6662.t2|Name=Ggra6662.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=476bp
MEPEPSAPAARVAHNHPNQNHPQRISSLPDALVALKQHVLPPSLQPDALR
ASHDLLARTVDAVNTADVTTLHAARAQLHPLHHFLAYVSTLHAALAAVDA
KSPSVPHLLTEFVQLVRCTPASSALHAAHRWIGACRHAARLVVDTRNLPG
AMALIRPLRIAADKLATSPDCIVPIHADFLAVCLQAKCYRLAASWLRERR
RLRIDPVTAVQASDVHLVYHYAAVVFIGVKDYPAALQCCRLALAVPAPTP
GPFFQVAVSTFKYYMLLHLLVVGKAPQPFKFSSYQLSRLRNLTSEYAELA
AAYERMDRTQTQHVFESNRHAFEKHGNLGVVKQVMRTLTDALIERLTNSF
VTMKIEDVANRLGYSDQQEVHDVIVRMIEECKICARIDDRKRVVRLVDDG
SRVDEGLFAQVSGSLMQQSLQVLQRVDEFREKLQSDPTYVDKTMTSNRSQ
RRGMGGSSSSAKRSDAELMRLSGRA*
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mRNA from alignment at tig00000056_pilon:57658..59085+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6662.t2 ID=Ggra6662.t2|Name=Ggra6662.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000056_pilon:57658..59085+ (Gracilaria gracilis GNS1m male)
ATGGAGCCCGAGCCATCGGCGCCCGCGGCGCGCGTGGCGCACAATCACCC
CAACCAGAACCACCCGCAGCGCATCTCGTCGCTGCCCGACGCGCTGGTGG
CGCTCAAGCAGCATGTGCTGCCGCCGTCTCTGCAGCCCGACGCGCTGCGC
GCGTCGCACGACCTGCTGGCCAGGACCGTGGACGCCGTCAACACCGCTGA
CGTAACCACGCTGCACGCCGCGCGCGCGCAGCTTCACCCGCTGCACCACT
TCCTGGCGTACGTCTCCACGCTGCACGCCGCGCTGGCCGCCGTGGACGCC
AAGTCGCCCTCCGTGCCGCACCTGTTGACCGAGTTTGTGCAGCTGGTGCG
ATGCACGCCTGCGTCCAGCGCCTTGCATGCCGCGCACCGATGGATCGGCG
CCTGTCGCCATGCCGCGCGACTTGTCGTCGATACTAGGAATCTTCCTGGC
GCAATGGCGTTGATCCGACCTCTGCGAATCGCCGCCGACAAGCTCGCTAC
CTCGCCGGATTGCATTGTGCCCATTCATGCTGATTTTCTTGCCGTCTGCT
TGCAGGCAAAGTGCTATCGGTTGGCCGCGTCGTGGCTGCGCGAGCGCAGA
CGGCTGCGCATTGACCCTGTTACCGCTGTTCAGGCTTCGGATGTACATCT
TGTGTATCATTATGCGGCTGTTGTGTTCATCGGCGTCAAGGACTATCCCG
CCGCCTTGCAGTGCTGTCGGCTTGCGCTGGCGGTGCCGGCGCCCACGCCA
GGGCCCTTCTTCCAGGTGGCGGTGAGCACTTTCAAGTACTACATGTTGCT
GCATCTGTTGGTGGTGGGAAAGGCGCCGCAGCCTTTCAAGTTCAGCTCGT
ATCAACTGTCGCGGCTGCGAAACTTGACGTCGGAGTACGCTGAGCTTGCT
GCCGCGTACGAGCGCATGGATCGCACGCAGACGCAGCACGTGTTCGAATC
GAACCGGCACGCGTTTGAGAAGCACGGCAATCTGGGCGTGGTTAAACAGG
TGATGCGAACTCTAACAGACGCGCTAATTGAACGGTTAACCAACTCGTTT
GTAACCATGAAGATAGAAGACGTGGCGAATCGCTTGGGCTATTCGGACCA
ACAGGAGGTGCATGACGTGATTGTGCGCATGATAGAGGAATGCAAGATCT
GCGCTCGTATCGACGATCGAAAGCGTGTGGTGCGACTGGTTGACGATGGC
AGTCGCGTGGATGAGGGGCTGTTTGCGCAGGTTTCAGGCAGTTTGATGCA
ACAGAGCTTGCAGGTGTTGCAGAGAGTGGACGAGTTTCGAGAAAAACTGC
AAAGCGACCCGACGTACGTGGACAAGACGATGACAAGCAATCGCAGTCAG
AGAAGAGGCATGGGTGGGTCGTCGTCTTCGGCAAAGCGGTCGGACGCGGA
ATTGATGCGATTGAGTGGGAGAGCATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:57658..59085+

>Ggra6662.t2 ID=Ggra6662.t2|Name=Ggra6662.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1428bp|location=Sequence derived from alignment at tig00000056_pilon:57658..59085+ (Gracilaria gracilis GNS1m male)
ATGGAGCCCGAGCCATCGGCGCCCGCGGCGCGCGTGGCGCACAATCACCC
CAACCAGAACCACCCGCAGCGCATCTCGTCGCTGCCCGACGCGCTGGTGG
CGCTCAAGCAGCATGTGCTGCCGCCGTCTCTGCAGCCCGACGCGCTGCGC
GCGTCGCACGACCTGCTGGCCAGGACCGTGGACGCCGTCAACACCGCTGA
CGTAACCACGCTGCACGCCGCGCGCGCGCAGCTTCACCCGCTGCACCACT
TCCTGGCGTACGTCTCCACGCTGCACGCCGCGCTGGCCGCCGTGGACGCC
AAGTCGCCCTCCGTGCCGCACCTGTTGACCGAGTTTGTGCAGCTGGTGCG
ATGCACGCCTGCGTCCAGCGCCTTGCATGCCGCGCACCGATGGATCGGCG
CCTGTCGCCATGCCGCGCGACTTGTCGTCGATACTAGGAATCTTCCTGGC
GCAATGGCGTTGATCCGACCTCTGCGAATCGCCGCCGACAAGCTCGCTAC
CTCGCCGGATTGCATTGTGCCCATTCATGCTGATTTTCTTGCCGTCTGCT
TGCAGGCAAAGTGCTATCGGTTGGCCGCGTCGTGGCTGCGCGAGCGCAGA
CGGCTGCGCATTGACCCTGTTACCGCTGTTCAGGCTTCGGATGTACATCT
TGTGTATCATTATGCGGCTGTTGTGTTCATCGGCGTCAAGGACTATCCCG
CCGCCTTGCAGTGCTGTCGGCTTGCGCTGGCGGTGCCGGCGCCCACGCCA
GGGCCCTTCTTCCAGGTGGCGGTGAGCACTTTCAAGTACTACATGTTGCT
GCATCTGTTGGTGGTGGGAAAGGCGCCGCAGCCTTTCAAGTTCAGCTCGT
ATCAACTGTCGCGGCTGCGAAACTTGACGTCGGAGTACGCTGAGCTTGCT
GCCGCGTACGAGCGCATGGATCGCACGCAGACGCAGCACGTGTTCGAATC
GAACCGGCACGCGTTTGAGAAGCACGGCAATCTGGGCGTGGTTAAACAGG
TGATGCGAACTCTAACAGACGCGCTAATTGAACGGTTAACCAACTCGTTT
GTAACCATGAAGATAGAAGACGTGGCGAATCGCTTGGGCTATTCGGACCA
ACAGGAGGTGCATGACGTGATTGTGCGCATGATAGAGGAATGCAAGATCT
GCGCTCGTATCGACGATCGAAAGCGTGTGGTGCGACTGGTTGACGATGGC
AGTCGCGTGGATGAGGGGCTGTTTGCGCAGGTTTCAGGCAGTTTGATGCA
ACAGAGCTTGCAGGTGTTGCAGAGAGTGGACGAGTTTCGAGAAAAACTGC
AAAGCGACCCGACGTACGTGGACAAGACGATGACAAGCAATCGCAGTCAG
AGAAGAGGCATGGGTGGGTCGTCGTCTTCGGCAAAGCGGTCGGACGCGGA
ATTGATGCGATTGAGTGGGAGAGCATGA
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