Ggra6631.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6631.t1
Unique NameGgra6631.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length121
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000859_piloncontigtig00000859_pilon:231958..232320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10007359
PFAMsNB-ARC,RPW8
Max annot lvl35493|Streptophyta
KEGG koko:K19613
KEGG Pathwayko04014,map04014
Evalue5.16e-06
EggNOG OGsCOG4886@1|root,2QSSA@2759|Eukaryota,37R4B@33090|Viridiplantae,3GC2G@35493|Streptophyta,4JMFC@91835|fabids
Descriptiondisease resistance
COG categoryS
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6631Ggra6631Gracilaria gracilis GNS1m malegenetig00000859_pilon 231958..232320 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6631.t1.stop1Ggra6631.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000859_pilon 231958..231960 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6631.t1.CDS1Ggra6631.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000859_pilon 231958..232320 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6631.t1.exon1Ggra6631.t1.exon1Gracilaria gracilis GNS1m maleexontig00000859_pilon 231958..232320 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6631.t1.start1Ggra6631.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000859_pilon 232318..232320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6631.t1Ggra6631.t1Gracilaria gracilis GNS1m malepolypeptidetig00000859_pilon 231958..232320 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6631.t1 ID=Ggra6631.t1|Name=Ggra6631.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=121bp
LDTGFFVKSSGDAIWRSNSAPTQRQLVDFIAQHHSKIRTLTISNDGIESC
PVLNFCRAGEMPHLKRLNLSCVRMTAIAFSASHAPALETLHISNPMGPRS
EEVILDLALPELRELSIDYC*
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spliced messenger RNA

>Ggra6631.t1 ID=Ggra6631.t1|Name=Ggra6631.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=363bp|location=Sequence derived from alignment at tig00000859_pilon:231958..232320- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGACACCGGCTTCTTCGTCAAGTCCTCCGGCGACGCCATCTGGCGCTC
CAACTCCGCCCCGACGCAGCGGCAGCTCGTCGACTTCATCGCGCAGCACC
ACTCCAAAATCCGCACGCTCACCATCTCCAACGATGGCATCGAGTCCTGC
CCCGTGCTCAACTTCTGCCGCGCGGGCGAGATGCCCCACCTCAAGCGCCT
CAACCTCAGCTGCGTACGTATGACCGCCATTGCCTTCTCCGCGTCGCACG
CGCCGGCGCTCGAGACGCTGCACATCTCTAATCCGATGGGCCCGAGAAGT
GAAGAGGTGATTCTGGACTTGGCGCTGCCGGAACTGAGGGAGTTGAGCAT
TGACTATTGTTGA
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protein sequence of Ggra6631.t1

>Ggra6631.t1 ID=Ggra6631.t1|Name=Ggra6631.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=121bp
LDTGFFVKSSGDAIWRSNSAPTQRQLVDFIAQHHSKIRTLTISNDGIESC
PVLNFCRAGEMPHLKRLNLSCVRMTAIAFSASHAPALETLHISNPMGPRS
EEVILDLALPELRELSIDYC*
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mRNA from alignment at tig00000859_pilon:231958..232320-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6631.t1 ID=Ggra6631.t1|Name=Ggra6631.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=363bp|location=Sequence derived from alignment at tig00000859_pilon:231958..232320- (Gracilaria gracilis GNS1m male)
TTGGACACCGGCTTCTTCGTCAAGTCCTCCGGCGACGCCATCTGGCGCTC
CAACTCCGCCCCGACGCAGCGGCAGCTCGTCGACTTCATCGCGCAGCACC
ACTCCAAAATCCGCACGCTCACCATCTCCAACGATGGCATCGAGTCCTGC
CCCGTGCTCAACTTCTGCCGCGCGGGCGAGATGCCCCACCTCAAGCGCCT
CAACCTCAGCTGCGTACGTATGACCGCCATTGCCTTCTCCGCGTCGCACG
CGCCGGCGCTCGAGACGCTGCACATCTCTAATCCGATGGGCCCGAGAAGT
GAAGAGGTGATTCTGGACTTGGCGCTGCCGGAACTGAGGGAGTTGAGCAT
TGACTATTGTTGA
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Coding sequence (CDS) from alignment at tig00000859_pilon:231958..232320-

>Ggra6631.t1 ID=Ggra6631.t1|Name=Ggra6631.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=363bp|location=Sequence derived from alignment at tig00000859_pilon:231958..232320- (Gracilaria gracilis GNS1m male)
TTGGACACCGGCTTCTTCGTCAAGTCCTCCGGCGACGCCATCTGGCGCTC
CAACTCCGCCCCGACGCAGCGGCAGCTCGTCGACTTCATCGCGCAGCACC
ACTCCAAAATCCGCACGCTCACCATCTCCAACGATGGCATCGAGTCCTGC
CCCGTGCTCAACTTCTGCCGCGCGGGCGAGATGCCCCACCTCAAGCGCCT
CAACCTCAGCTGCGTACGTATGACCGCCATTGCCTTCTCCGCGTCGCACG
CGCCGGCGCTCGAGACGCTGCACATCTCTAATCCGATGGGCCCGAGAAGT
GAAGAGGTGATTCTGGACTTGGCGCTGCCGGAACTGAGGGAGTTGAGCAT
TGACTATTGTTGA
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