Ggra6626.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6626.t1
Unique NameGgra6626.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000859_piloncontigtig00000859_pilon:154680..155177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4533.OB02G38620.1
PFAMsPeptidase_M48
Max annot lvl35493|Streptophyta
Evalue3.11e-18
EggNOG OGsCOG0501@1|root,KOG2661@2759|Eukaryota,37KS4@33090|Viridiplantae,3G796@35493|Streptophyta,3KTVB@4447|Liliopsida,3I63G@38820|Poales
DescriptionMitochondrial metalloendopeptidase OMA1
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6626Ggra6626Gracilaria gracilis GNS1m malegenetig00000859_pilon 154680..155177 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6626.t1.start1Ggra6626.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000859_pilon 154680..154682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6626.t1.CDS1Ggra6626.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000859_pilon 154680..155177 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6626.t1.exon1Ggra6626.t1.exon1Gracilaria gracilis GNS1m maleexontig00000859_pilon 154680..155177 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6626.t1.stop1Ggra6626.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000859_pilon 155175..155177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6626.t1Ggra6626.t1Gracilaria gracilis GNS1m malepolypeptidetig00000859_pilon 154680..155177 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6626.t1 ID=Ggra6626.t1|Name=Ggra6626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=166bp
MRMCSEEELAMMLAHEIAHAVNRHSAEKIQLQMLIWPLFVLLSAVFSSQM
LSISLTKLLLELPFGKRLEWEAEEVGMIIMTEACYDPRKGPSIFDKLAHA
MGEQKGGWVSTQMKSIVSTHPMSARRASDLRKKSEQLADRYEIKCGVAQH
MLEYDFGFPDVNSLD*
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spliced messenger RNA

>Ggra6626.t1 ID=Ggra6626.t1|Name=Ggra6626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00000859_pilon:154680..155177+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTATGTGCAGCGAGGAAGAATTGGCTATGATGCTTGCTCATGAGAT
TGCGCATGCCGTCAATCGACACTCTGCGGAGAAGATTCAACTGCAAATGT
TGATCTGGCCGCTGTTTGTACTCCTGTCGGCTGTGTTCAGTTCGCAGATG
TTGTCTATCAGTCTCACCAAGCTACTGCTTGAATTGCCGTTCGGAAAAAG
GCTGGAATGGGAAGCCGAAGAGGTCGGAATGATCATAATGACTGAAGCTT
GCTATGATCCTCGGAAAGGTCCTTCTATTTTTGATAAACTTGCTCATGCT
ATGGGCGAACAAAAGGGCGGCTGGGTTTCTACACAGATGAAATCCATTGT
GTCCACGCATCCAATGTCCGCGCGAAGGGCCTCTGATCTCAGGAAAAAGT
CCGAACAATTGGCCGATCGCTACGAGATCAAGTGCGGCGTCGCTCAACAC
ATGCTTGAATACGATTTTGGATTCCCCGATGTCAACTCACTCGATTAA
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protein sequence of Ggra6626.t1

>Ggra6626.t1 ID=Ggra6626.t1|Name=Ggra6626.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=166bp
MRMCSEEELAMMLAHEIAHAVNRHSAEKIQLQMLIWPLFVLLSAVFSSQM
LSISLTKLLLELPFGKRLEWEAEEVGMIIMTEACYDPRKGPSIFDKLAHA
MGEQKGGWVSTQMKSIVSTHPMSARRASDLRKKSEQLADRYEIKCGVAQH
MLEYDFGFPDVNSLD*
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mRNA from alignment at tig00000859_pilon:154680..155177+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6626.t1 ID=Ggra6626.t1|Name=Ggra6626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00000859_pilon:154680..155177+ (Gracilaria gracilis GNS1m male)
ATGCGTATGTGCAGCGAGGAAGAATTGGCTATGATGCTTGCTCATGAGAT
TGCGCATGCCGTCAATCGACACTCTGCGGAGAAGATTCAACTGCAAATGT
TGATCTGGCCGCTGTTTGTACTCCTGTCGGCTGTGTTCAGTTCGCAGATG
TTGTCTATCAGTCTCACCAAGCTACTGCTTGAATTGCCGTTCGGAAAAAG
GCTGGAATGGGAAGCCGAAGAGGTCGGAATGATCATAATGACTGAAGCTT
GCTATGATCCTCGGAAAGGTCCTTCTATTTTTGATAAACTTGCTCATGCT
ATGGGCGAACAAAAGGGCGGCTGGGTTTCTACACAGATGAAATCCATTGT
GTCCACGCATCCAATGTCCGCGCGAAGGGCCTCTGATCTCAGGAAAAAGT
CCGAACAATTGGCCGATCGCTACGAGATCAAGTGCGGCGTCGCTCAACAC
ATGCTTGAATACGATTTTGGATTCCCCGATGTCAACTCACTCGATTAA
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Coding sequence (CDS) from alignment at tig00000859_pilon:154680..155177+

>Ggra6626.t1 ID=Ggra6626.t1|Name=Ggra6626.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=498bp|location=Sequence derived from alignment at tig00000859_pilon:154680..155177+ (Gracilaria gracilis GNS1m male)
ATGCGTATGTGCAGCGAGGAAGAATTGGCTATGATGCTTGCTCATGAGAT
TGCGCATGCCGTCAATCGACACTCTGCGGAGAAGATTCAACTGCAAATGT
TGATCTGGCCGCTGTTTGTACTCCTGTCGGCTGTGTTCAGTTCGCAGATG
TTGTCTATCAGTCTCACCAAGCTACTGCTTGAATTGCCGTTCGGAAAAAG
GCTGGAATGGGAAGCCGAAGAGGTCGGAATGATCATAATGACTGAAGCTT
GCTATGATCCTCGGAAAGGTCCTTCTATTTTTGATAAACTTGCTCATGCT
ATGGGCGAACAAAAGGGCGGCTGGGTTTCTACACAGATGAAATCCATTGT
GTCCACGCATCCAATGTCCGCGCGAAGGGCCTCTGATCTCAGGAAAAAGT
CCGAACAATTGGCCGATCGCTACGAGATCAAGTGCGGCGTCGCTCAACAC
ATGCTTGAATACGATTTTGGATTCCCCGATGTCAACTCACTCGATTAA
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