Ggra657.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra657.t1
Unique NameGgra657.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000947_piloncontigtig00000947_pilon:41663..45425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1082931.KKY_2092
Preferred nameomp28
PFAMsSIMPL
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K09807
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
Evalue1.85e-29
EggNOG OGsCOG2968@1|root,COG2968@2|Bacteria,1RH7T@1224|Proteobacteria,2U981@28211|Alphaproteobacteria,3N6Z2@45401|Hyphomicrobiaceae
DescriptionProtein of unknown function (DUF541)
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra657Ggra657Gracilaria gracilis GNS1m malegenetig00000947_pilon 41663..45425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra657.t1Ggra657.t1Gracilaria gracilis GNS1m malepolypeptidetig00000947_pilon 41663..45425 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra657.t1.stop1Ggra657.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000947_pilon 41663..41665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra657.t1.CDS1Ggra657.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000947_pilon 41663..42164 -
Ggra657.t1.CDS2Ggra657.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000947_pilon 44908..45425 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra657.t1.exon1Ggra657.t1.exon1Gracilaria gracilis GNS1m maleexontig00000947_pilon 41663..42164 -
Ggra657.t1.exon2Ggra657.t1.exon2Gracilaria gracilis GNS1m maleexontig00000947_pilon 44908..45425 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra657.t1.intron1Ggra657.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000947_pilon 42165..44907 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra657.t1.start1Ggra657.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000947_pilon 45423..45425 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra657.t1 ID=Ggra657.t1|Name=Ggra657.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=340bp
MWNLTALDLNESPPEVEWAHRLGHNLFRAGTPGERIYQAPLSTMLGPIGA
SFDTELATARQDTSRLSLRRGVTYVTRLRGRQILSWAYIAFSIVISCVCA
RKNWPRRDNAFERAKDAVDVATLLLVSVFGLVKLTSEDPTALKSLARGRA
PVEDLEQAGRFLRTGAVLWGGKGQQFDQVLAVLTEQGIESRDVQTTFFDV
NPQFQRGPNGEDQGITGYQVTNQVRVVVRDLDNLGRILDALVSAGSNRIS
GVNFSIGNDMELRNRARALAVADATSRAGVYAQAAEVKVGELRAISEQSI
PQPQLRQSFGAFAADASVPIATGELDVQATVFLQFALVD*
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spliced messenger RNA

>Ggra657.t1 ID=Ggra657.t1|Name=Ggra657.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000947_pilon:41663..45425- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAATTTGACTGCCTTGGATCTCAATGAATCGCCCCCGGAAGTCGA
GTGGGCCCACCGCCTGGGGCATAACCTCTTTCGCGCCGGAACCCCGGGCG
AAAGAATCTACCAAGCGCCCCTCTCAACCATGCTCGGCCCCATCGGCGCC
TCCTTTGACACCGAACTCGCAACCGCACGACAAGACACCAGTCGTTTATC
ACTGCGACGCGGCGTGACCTACGTGACGCGCCTAAGAGGGCGCCAAATCC
TCTCCTGGGCGTACATAGCATTCTCAATCGTGATCTCGTGCGTGTGCGCG
CGTAAGAATTGGCCGCGACGCGATAATGCATTCGAGCGCGCGAAGGACGC
GGTTGATGTGGCTACATTGCTGCTGGTGAGTGTTTTCGGACTTGTGAAGC
TTACGAGCGAGGATCCGACTGCGCTTAAGAGTCTGGCGCGGGGGCGAGCC
CCTGTGGAAGATCTAGAGCAAGCGGGGCGCTTCCTGCGCACTGGAGCTGT
ATTGTGGGGTGGGAAGGGTCAACAGTTTGATCAAGTGCTGGCTGTCCTTA
CCGAACAAGGAATCGAAAGCAGAGATGTTCAAACAACTTTCTTTGACGTG
AATCCGCAATTTCAGCGTGGGCCGAATGGTGAAGATCAGGGCATCACTGG
GTATCAAGTGACAAATCAAGTGCGAGTGGTTGTTCGCGATTTGGACAACT
TGGGAAGGATTCTTGATGCGCTTGTCTCAGCTGGTAGCAATCGCATTTCC
GGTGTGAACTTCAGCATTGGTAATGATATGGAACTGCGTAACCGTGCTCG
CGCCCTGGCTGTTGCCGATGCGACCAGTCGGGCAGGAGTGTACGCACAAG
CAGCTGAAGTCAAGGTTGGAGAATTAAGAGCTATCAGCGAACAATCAATT
CCGCAGCCGCAGCTTCGTCAGTCATTCGGTGCTTTCGCTGCCGACGCATC
GGTACCGATTGCTACCGGTGAACTTGACGTTCAGGCTACGGTCTTCCTTC
AGTTCGCGCTAGTTGACTAA
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protein sequence of Ggra657.t1

>Ggra657.t1 ID=Ggra657.t1|Name=Ggra657.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MWNLTALDLNESPPEVEWAHRLGHNLFRAGTPGERIYQAPLSTMLGPIGA
SFDTELATARQDTSRLSLRRGVTYVTRLRGRQILSWAYIAFSIVISCVCA
RKNWPRRDNAFERAKDAVDVATLLLVSVFGLVKLTSEDPTALKSLARGRA
PVEDLEQAGRFLRTGAVLWGGKGQQFDQVLAVLTEQGIESRDVQTTFFDV
NPQFQRGPNGEDQGITGYQVTNQVRVVVRDLDNLGRILDALVSAGSNRIS
GVNFSIGNDMELRNRARALAVADATSRAGVYAQAAEVKVGELRAISEQSI
PQPQLRQSFGAFAADASVPIATGELDVQATVFLQFALVD*
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mRNA from alignment at tig00000947_pilon:41663..45425-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra657.t1 ID=Ggra657.t1|Name=Ggra657.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3763bp|location=Sequence derived from alignment at tig00000947_pilon:41663..45425- (Gracilaria gracilis GNS1m male)
ATGTGGAATTTGACTGCCTTGGATCTCAATGAATCGCCCCCGGAAGTCGA
GTGGGCCCACCGCCTGGGGCATAACCTCTTTCGCGCCGGAACCCCGGGCG
AAAGAATCTACCAAGCGCCCCTCTCAACCATGCTCGGCCCCATCGGCGCC
TCCTTTGACACCGAACTCGCAACCGCACGACAAGACACCAGTCGTTTATC
ACTGCGACGCGGCGTGACCTACGTGACGCGCCTAAGAGGGCGCCAAATCC
TCTCCTGGGCGTACATAGCATTCTCAATCGTGATCTCGTGCGTGTGCGCG
CGTAAGAATTGGCCGCGACGCGATAATGCATTCGAGCGCGCGAAGGACGC
GGTTGATGTGGCTACATTGCTGCTGGTGAGTGTTTTCGGACTTGTGAAGC
TTACGAGCGAGGATCCGACTGCGCTTAAGAGTCTGGCGCGGGGGCGAGCC
CCTGTGGAAGATCTAGAGCAAGCGGGGCGCTTCCTGCGCACTGGAGCTGT
ATTGTGGGGTGGGAAGGGGTATGTGGCCATGGAAGGGATCCAGAGGTTGT
TAGGGGTGGAGGTTCGTGGAGTGGAGTGGGCGAGGGCGCAGGGGTGCTGC
TATGGGCGTGCAGTGCTGGGCGAGGAGTTGGATGCAATGGCGGCGAAGGT
GGAGACATTGAAGAAGGGGGGCTTCTTCTTTATGGAGGGGATTTGTAAGA
GGCCATACTTTTGGAATACTTGTGTGAAGGTGGAGGGCGTGGCGTTGGAA
GTGGCGTCGTTTGGTGGCGCGTCGGAGATGGAATGTGAACTCGATTTTAC
AAGGGCTGCTCACTATGCCAAGGTGGCGTAGGTTTTGCTGAAAACAAAAG
CTGACTCATGGTACGCCTGCGGGTACAGGTATGTAGCATGCGTTTGACGG
CGGAAGCAAGGGATGGATATGAATTCTGCCTCCAGCATCGAAAGGAACAA
GGTCTAATTTCCTGTTATATGGGGACGGCACACCTTGCCTTTAGGCAGCT
TTTGACCTGAAGAAATGAACGATTGCAGAATGGGGAGAAATGCGATGTTA
GCAATACGTCTTGTGTGTGTCTGTGTGTTTGTACTTTGATCAATGCTGTG
GAATAGGGAGGATGATATATACCTTTGTGAGCATAGGTCTCATGCGTCTC
ACAGGCGACGAGGCACGGAAATTCCTCGTTGCACCAGCAGCAGTAGTGCA
TGGTACGATCGGGACCTGAGCAGGGCATGATGGGAAGGGGAGGCGGAGGT
TCTAAACAGTAGAGAGGTGAAGTGGTGGCACTAAATGCAGAAGCGAGCTT
GAATGGAGGATTGTGCGTGGCAGGAGGGGACGAAGGCGTTGTGGGAGATA
AACGGAGTTCTTATACTGCTGCAGCGGCAAGTTGCACTTCCGTGGAACAT
TCTGAAGTTAACCTTACCGCTACATGGGCGGCGCTCTTTTGGAAGTGATT
GTTTCGGCGTGTAACAGTTACTTTGCGGTTTTTACCCGCCCACATTGCCC
GCACTTGGCAGTTCAACAGTGAGGATAAGGTCTACTCGAAACATGAAAAG
GATGGGATGGTTGCGGGGTTATCTGGCCCCCCTGTAACCCCTGAACCGCT
CAGCCTATTCCGCTTTTTGACACCTCGAATCCCGTCGCGTCCATTACGTC
GATGTATGAACTCGTTGTGAGCAAATAAACACCCCGCCATCAGGGCGGGT
TGTTTTTTCGCTCACAATACAACACCCAATCCATCCCGCACTGTATCGTG
TTTCTTGTCTCCCCATGGCAAACTCCGTCACAATTTTTCTTTGTGGGAAT
GTCAAGTTGCTCTTGGAATATTTCGGCTCCCTTGACCTTCCACAATCGTG
ATGACTGATTTCTGATTTCTGAAGATGTTACTGTTTATTAATCCTTTCTG
GGGGTGATCTCAATAGAGAGTCTCACCCGAGCTGATATCTTCACAAGGTG
GATGAATATTCCAGCTTGTACCATGGAAACTAAAATTCCTTGAATAGCCA
TGCTGGCTCGAACATGGCGTTCCTCCAGACCTCCAAAAACAGAGACTGTC
TCAAAGCCGATACAACCGTCTAGTCCCTCTGTTTGTTCTTTGGCGACTTC
CCGTTCGCTATTTTGTTTGCCATACCTCAGCCAGATGTTACAACGCTGAC
TATTACTGTAGTTAACAAGTTTTCCACGGGCATATCTTTCCTGGATCTGC
GCCCCCTACTACTCGTTCCGCCGAGAGAAACATCTTTCTTTCTATGGAAA
CACCGTTTCGTTCACGAGCCACAGGGCCCAGTAGTCCACTTTACAAGTTC
ATTGAAGTCATCATGCTGTGCACAAAGTTGCGAGCCATCGCAGCCAGCTC
TAAGCGGGCTTCTGCGCTTGTATTGCACAGCTGGCGAACTAGTGTGGCAC
TACCATCACGGGACGATCTGTAAACCAACGGCGTTGAGGGCTGAAACAAG
GACATCCAGCAACGTCGCCTACAAAACGGTTGAATTATATGTAAAGTTAT
ATAACGCGGTAGGCGTTGGATTCAGCCATGGCCGTTACTTGAAGCCCGCA
TCGTTGACCCTATATCTCCACGTTTGAAGTTCCGTATTCCACTGGTGGGA
ATAGAACAGGAGACCGTACAGTAGGTTAGGTACAGTAGGGTAAGGGATTC
TGCCAGGTGACGATGATGGCCACATTCGATGCCAGCTTGGCCTGGGTAGA
GTTGCCGTGGTTGTACTAAAGGACTCCTTTGAAGCAAGTGAAGGTCACAC
GTTCCCACTTCTCTCAAAGCCACTTCTTACCAAGAGGTGCTTATACAAGG
GTAGTGGTTACTCCATCAACGGAAGTTGCAGTACTGTCTCCAAAAAGGTT
GCCTTTGCCGCCGAGAAATGAATTCGACAACGAAGAACATCTTCGTGTTT
GCTTTGGTGCTGTTCGCCGCATCCGTTGTTCAATCAAATGCTCAAGCCGT
GCCTCGTACAATCAGTATGTCTGGTGAGGGAAGCGTATCCGCACCTCCAG
ATATGGCCACAGTGAGTACTGGAGTCGTAACGACAGCGGCCACAGCACAA
GCAGCATTAGCGGCCAACAGCAGGGTCGTATTTGTTACTGACTGTTTTTG
CCTCTTTCGTCAGAATGACTACCGTTTGTGTCCCCTAATAAGTTTAAACT
TCGTTTCTGAATGTTTCTATAGGAATGTGACTACGCGGCGTAGCACGTTT
ATGACTACTGGCTGAGAGGTACATGAAAATAGTCAGTCACAAATACGCCC
CTGGCCAACAGTCAACAGTTTGATCAAGTGCTGGCTGTCCTTACCGAACA
AGGAATCGAAAGCAGAGATGTTCAAACAACTTTCTTTGACGTGAATCCGC
AATTTCAGCGTGGGCCGAATGGTGAAGATCAGGGCATCACTGGGTATCAA
GTGACAAATCAAGTGCGAGTGGTTGTTCGCGATTTGGACAACTTGGGAAG
GATTCTTGATGCGCTTGTCTCAGCTGGTAGCAATCGCATTTCCGGTGTGA
ACTTCAGCATTGGTAATGATATGGAACTGCGTAACCGTGCTCGCGCCCTG
GCTGTTGCCGATGCGACCAGTCGGGCAGGAGTGTACGCACAAGCAGCTGA
AGTCAAGGTTGGAGAATTAAGAGCTATCAGCGAACAATCAATTCCGCAGC
CGCAGCTTCGTCAGTCATTCGGTGCTTTCGCTGCCGACGCATCGGTACCG
ATTGCTACCGGTGAACTTGACGTTCAGGCTACGGTCTTCCTTCAGTTCGC
GCTAGTTGACTAA
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Coding sequence (CDS) from alignment at tig00000947_pilon:41663..45425-

>Ggra657.t1 ID=Ggra657.t1|Name=Ggra657.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00000947_pilon:41663..45425- (Gracilaria gracilis GNS1m male)
ATGTGGAATTTGACTGCCTTGGATCTCAATGAATCGCCCCCGGAAGTCGA
GTGGGCCCACCGCCTGGGGCATAACCTCTTTCGCGCCGGAACCCCGGGCG
AAAGAATCTACCAAGCGCCCCTCTCAACCATGCTCGGCCCCATCGGCGCC
TCCTTTGACACCGAACTCGCAACCGCACGACAAGACACCAGTCGTTTATC
ACTGCGACGCGGCGTGACCTACGTGACGCGCCTAAGAGGGCGCCAAATCC
TCTCCTGGGCGTACATAGCATTCTCAATCGTGATCTCGTGCGTGTGCGCG
CGTAAGAATTGGCCGCGACGCGATAATGCATTCGAGCGCGCGAAGGACGC
GGTTGATGTGGCTACATTGCTGCTGGTGAGTGTTTTCGGACTTGTGAAGC
TTACGAGCGAGGATCCGACTGCGCTTAAGAGTCTGGCGCGGGGGCGAGCC
CCTGTGGAAGATCTAGAGCAAGCGGGGCGCTTCCTGCGCACTGGAGCTGT
ATTGTGGGGTGGGAAGGGTCAACAGTTTGATCAAGTGCTGGCTGTCCTTA
CCGAACAAGGAATCGAAAGCAGAGATGTTCAAACAACTTTCTTTGACGTG
AATCCGCAATTTCAGCGTGGGCCGAATGGTGAAGATCAGGGCATCACTGG
GTATCAAGTGACAAATCAAGTGCGAGTGGTTGTTCGCGATTTGGACAACT
TGGGAAGGATTCTTGATGCGCTTGTCTCAGCTGGTAGCAATCGCATTTCC
GGTGTGAACTTCAGCATTGGTAATGATATGGAACTGCGTAACCGTGCTCG
CGCCCTGGCTGTTGCCGATGCGACCAGTCGGGCAGGAGTGTACGCACAAG
CAGCTGAAGTCAAGGTTGGAGAATTAAGAGCTATCAGCGAACAATCAATT
CCGCAGCCGCAGCTTCGTCAGTCATTCGGTGCTTTCGCTGCCGACGCATC
GGTACCGATTGCTACCGGTGAACTTGACGTTCAGGCTACGGTCTTCCTTC
AGTTCGCGCTAGTTGACTAA
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