Ggra6556.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6556.t1
Unique NameGgra6556.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:259766..263414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6556Ggra6556Gracilaria gracilis GNS1m malegenetig00000081_pilon 259766..263414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6556.t1Ggra6556.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 259766..263414 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6556.t1.start1Ggra6556.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 259766..259768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6556.t1.CDS1Ggra6556.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 259766..260068 +
Ggra6556.t1.CDS2Ggra6556.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 263085..263414 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6556.t1.exon1Ggra6556.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 259766..260068 +
Ggra6556.t1.exon2Ggra6556.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 263085..263414 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6556.t1.intron1Ggra6556.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 260069..263084 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6556.t1.stop1Ggra6556.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 263412..263414 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6556.t1 ID=Ggra6556.t1|Name=Ggra6556.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MEQAISAEEEHRSATPAMRRKIFTILQEEKASLEARKADVEGRLDLENRR
LEAHNRMGCTSERPASDPCSWLSDPGDIARMRDRLKEASENKELILPIVE
ERKMVATITKAERRCRGRPRPAADGGRANAPKEGHDRRPTAADGGQATAP
GAERRRPRRRARGRAKEAAPSRPGPSEGGRAVAPRAERRRPKGARGRPSD
GAQEGHDLPR*
back to top

spliced messenger RNA

>Ggra6556.t1 ID=Ggra6556.t1|Name=Ggra6556.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000081_pilon:259766..263414+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAAGCCATTTCAGCTGAAGAGGAGCACCGTAGCGCAACACCTGC
AATGCGTCGAAAGATATTCACCATTCTACAAGAAGAGAAAGCCTCGCTTG
AAGCCCGCAAAGCGGATGTGGAAGGTCGCCTTGATCTTGAAAACAGAAGA
TTAGAAGCCCACAATCGAATGGGTTGCACTTCGGAACGCCCTGCCTCGGA
TCCATGTTCTTGGCTTTCAGATCCCGGCGACATTGCAAGAATGCGCGACA
GACTCAAGGAAGCCTCTGAAAACAAAGAACTTATTCTTCCGATCGTTGAA
GAGCGGAAGATGGTTGCCACGATAACCAAAGCTGAGCGACGGTGCCGAGG
AAGGCCACGTCCAGCGGCCGACGGAGGCCGAGCAAACGCGCCCAAGGAAG
GCCACGACCGGCGGCCGACGGCGGCCGACGGCGGCCAAGCGACGGCGCCC
GGGGCCGAGCGAAGGCGGCCGCGCCGTCGCGCCCGGGGCCGAGCGAAGGA
GGCCGCGCCGTCGCGCCCGGGGCCGAGCGAAGGCGGCCGCGCCGTCGCGC
CCAGGGCCGAGCGACGGCGCCCGAAGGGCGCCCGAGGGCGGCCAAGCGAC
GGTGCCCAGGAAGGCCACGACCTCCCGAGATGA
back to top

protein sequence of Ggra6556.t1

>Ggra6556.t1 ID=Ggra6556.t1|Name=Ggra6556.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MEQAISAEEEHRSATPAMRRKIFTILQEEKASLEARKADVEGRLDLENRR
LEAHNRMGCTSERPASDPCSWLSDPGDIARMRDRLKEASENKELILPIVE
ERKMVATITKAERRCRGRPRPAADGGRANAPKEGHDRRPTAADGGQATAP
GAERRRPRRRARGRAKEAAPSRPGPSEGGRAVAPRAERRRPKGARGRPSD
GAQEGHDLPR*
back to top

mRNA from alignment at tig00000081_pilon:259766..263414+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6556.t1 ID=Ggra6556.t1|Name=Ggra6556.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3649bp|location=Sequence derived from alignment at tig00000081_pilon:259766..263414+ (Gracilaria gracilis GNS1m male)
ATGGAGCAAGCCATTTCAGCTGAAGAGGAGCACCGTAGCGCAACACCTGC
AATGCGTCGAAAGATATTCACCATTCTACAAGAAGAGAAAGCCTCGCTTG
AAGCCCGCAAAGCGGATGTGGAAGGTCGCCTTGATCTTGAAAACAGAAGA
TTAGAAGCCCACAATCGAATGGGTTGCACTTCGGAACGCCCTGCCTCGGA
TCCATGTTCTTGGCTTTCAGATCCCGGCGACATTGCAAGAATGCGCGACA
GACTCAAGGAAGCCTCTGAAAACAAAGAACTTATTCTTCCGATCGTTGAA
GAGGTACGAAGTAAAAGGGAACGTCTTTTGGAACAAGCTTTACTCATTTA
TAAAACGCGTGCCACAGAAACTAAAAAAAGTTGATGTGAAGATAGCTTCA
CATCAACTATTTCTAGTTTCTGGGGCACATGTATGTATACGAAAAAGGCT
GGTATCAGAAGTCTGGAACAAGTCGTGTGCAGTCTGTCTTGTAACGAGTG
CATTCATGAACTCCAACGAACACTGCCAAATGCAACCTGAAGATGGGAAG
AGCTTACTCGCGTTCGAGGATTTTGACCCATGAGCAGCAGCACCGAATGT
TATTTCGAATTCCGTGGGGCGCCGTTGAAGTTGGTTTTTGTCTGGGAGCG
TTCGAAACTGTTAGGCATGTTTATACATGCCTAGCAGTTTCGAATGACAC
TCAAAGGGTCCATCAAGATAAACGCGGCTCACATTCAGAAGATGATTTGT
TCCTTGCAACTCAGAAAACCCTACTCGGAGAAGCATGGTGGCTCTCGTAG
CATTGTTTGCCACCGCTTTCCCAAAGAAAGGCTCGTCCAGCACCGGCGGC
AGGTTCCTTCCGGGATGTGGATGTTCTCCGAGGTGAATATCCTTGACCAG
TACTGTAGTGGGATGATGGGACTTTAAGCATCTCTTTTTGAGATATGCAT
ATTTAGTATCTGACAATGACCGGGTGCTCTCGTTTCGGGTTGATCGTTTG
CTTTTCCGTCTCGACCGTCCTGGTATTCCTCTGCTTCCAATGTTCAAAGG
AGTTCCGATGCGTTTCAAACGATCTATAGTCGTCTGAAAGCTTGGTTCTT
TTCAGATTGGAGGGATTAATTGTCATCTATATCTTCGAGGGCGGTCCAAT
GTTTGCCAACGATTTAGGATACGAAGGCCTGACTTCTAATACGGTGCCAT
CGATGACGAAGAGAATAAAACTGCAGAATCCGGTCGTTCCCATATTGAAT
CAGAAAAAGGTAAACTGCTTTGCCTATTTGTTCTCCGTGGTGCTTCGCAG
TGATCCTGTTTCTTTCTTAATAGCTCACCATTCCAAAATCTGGTGCCTTG
TCCAGAACCCGTACTCAGGAACCTTTCTTACCTTGCGAGAACTTTTCCGT
TGGTACGGTCGTCGGGTCGTCGGGTCTGACGTTAGGATTCCGGATTTCCT
GTTGTAAGGGCAGGGCATAAATGGGGGTTGCTTCGAACTGAAGCAACGCT
TTCTCAAATGTTTGGAATAGCTTCTTTCTTGACGGACTTGAGAAGACGTG
AGTTGTTCCATTTCTCTATGGCTGTGGTTTAGACAGTAACAAGCTCTCAT
CGCCGTTATGTTTCAGGGATATGTGGAGACTTCCTGTTGAAGTTTTCCTC
CCTACAGCTGTGACAAGGCACCTACACAGATGTGCACCAAAGTGGATGGG
TTCGTAGAGTTAATCACGACCTATTAGTTCTAATCGGACTGCAGGGGAAT
ATGATGAGAGAGGAACGAAACCACATGTTTCCTGCAATTGTGTTCCGTAC
TCGCGGCACAGCATAATGGATATAGCGTTGATATTGTTTTGGACACACTG
GTAGTGCCCAAAACAATATCCACGCTACTCCATTTCGATTCAAGACAAAA
ACAGAAGAAGCCGGACCGGACCACGTTTTGTGTCCGTCATTTAGTACCAC
AACGTTAATCATTTAGTACCACAACGTTAGTCATTTAGTACCACAACGTT
AATCActtgtagaggtacgtaggagggtatcaaggaagtctcattctacc
ccgctgatttcggaattaccaaagggctttgagagcattctttctgagag
aaacagaaaccgctttggcacagatttacgtgggacatacgccaagttta
catgtagaccgggggttctgaacgacgttgactgctttcttctgagatgc
ccaaaaaggacattgtcaaggcgtttatgtgtctaccttcacgtcgagaa
cgccaagaacaatcagttgctagtatagtcagaaagtggcccgttagagt
gttggcttttcttgtgagagagcgtttctttgaatagaaacgttccgcac
caagttgtaattaagATGTCGCTGCTCCGGCAAACTCTCAGAGATCTTCT
TCAGAGAAGCGAACCTTCATCCCTCAGGAGCTCTTTTGTTCACAATTTCT
ACTCGCCACAACCCCCTTTTTCTCTCTTGCGTTGTTCCAATAGGTGGGTT
GTGTTGTATCGGAAATTGCCACCGGCCTAGATGGAGTGATGTGTTCCAGC
GTAGAGGGGACAACATCTGGATGATATAGCAGAACCGGCCCAGTGGCGCG
CTGGACGTGGGTAGGTATGACCGAACATACAATGGATAGAAGCGTGAAGA
ACTTGAGAAGCGCGAAGCGATCGGAGAAGTGCAATGTGCTTCGTTCTTAC
CTGACCAACGCAGCAAAGTTGGAAGTACCCTTGGTACTTGGGCGTGGAAC
AGGCAAACGGCAGCGTAGGAGAATAACAAGAACACATTCAATTTTACgcg
gacaggactagaattgcgtgcaagatgatggaccattccattctattgtg
agatacagtggcatctcgagcagcagaaaaagtcaggcaacggctctaag
ggcacacagactgggtgaagtgcgtggcagtgagcgatgacggcactcgc
atcgtgtcagggtcgtgggacaagaaagtgcgtgtgtgggacgcgcaaag
tggcaacgccgtgggacagccgatccaaggtcacacaaacacggtgaggt
gcgtggcagtgagcgctgacggcactcgcatcgtgtcagggtcgtgggac
gaggaggtacgggtgtgggacgagcgaaatggcaacgccgtcggacagcc
gatccaaggccacacagacagccggaagtgcgtaacagtgagcgctgacg
gcactccggctgtgacggtcgatcgggatatacaacggctgtgggtgtaa
cgtaggtatctcagagcgtgatgttgcgtggaaacgcaacatggatgctc
tcgcgcttatgtgatGCAGCGGAAGATGGTTGCCACGATAACCAAAGCTG
AGCGACGGTGCCGAGGAAGGCCACGTCCAGCGGCCGACGGAGGCCGAGCA
AACGCGCCCAAGGAAGGCCACGACCGGCGGCCGACGGCGGCCGACGGCGG
CCAAGCGACGGCGCCCGGGGCCGAGCGAAGGCGGCCGCGCCGTCGCGCCC
GGGGCCGAGCGAAGGAGGCCGCGCCGTCGCGCCCGGGGCCGAGCGAAGGC
GGCCGCGCCGTCGCGCCCAGGGCCGAGCGACGGCGCCCGAAGGGCGCCCG
AGGGCGGCCAAGCGACGGTGCCCAGGAAGGCCACGACCTCCCGAGATGA
back to top

Coding sequence (CDS) from alignment at tig00000081_pilon:259766..263414+

>Ggra6556.t1 ID=Ggra6556.t1|Name=Ggra6556.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000081_pilon:259766..263414+ (Gracilaria gracilis GNS1m male)
ATGGAGCAAGCCATTTCAGCTGAAGAGGAGCACCGTAGCGCAACACCTGC
AATGCGTCGAAAGATATTCACCATTCTACAAGAAGAGAAAGCCTCGCTTG
AAGCCCGCAAAGCGGATGTGGAAGGTCGCCTTGATCTTGAAAACAGAAGA
TTAGAAGCCCACAATCGAATGGGTTGCACTTCGGAACGCCCTGCCTCGGA
TCCATGTTCTTGGCTTTCAGATCCCGGCGACATTGCAAGAATGCGCGACA
GACTCAAGGAAGCCTCTGAAAACAAAGAACTTATTCTTCCGATCGTTGAA
GAGCGGAAGATGGTTGCCACGATAACCAAAGCTGAGCGACGGTGCCGAGG
AAGGCCACGTCCAGCGGCCGACGGAGGCCGAGCAAACGCGCCCAAGGAAG
GCCACGACCGGCGGCCGACGGCGGCCGACGGCGGCCAAGCGACGGCGCCC
GGGGCCGAGCGAAGGCGGCCGCGCCGTCGCGCCCGGGGCCGAGCGAAGGA
GGCCGCGCCGTCGCGCCCGGGGCCGAGCGAAGGCGGCCGCGCCGTCGCGC
CCAGGGCCGAGCGACGGCGCCCGAAGGGCGCCCGAGGGCGGCCAAGCGAC
GGTGCCCAGGAAGGCCACGACCTCCCGAGATGA
back to top