Ggra6540.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6540.t1
Unique NameGgra6540.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length555
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:215029..216795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707028.1
Preferred namepfk
PFAMsPFK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00850
KEGG ReactionR00756,R03236,R03237,R03238,R03239,R04779
KEGG Pathwayko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230
KEGG ModuleM00001,M00345
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003872,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008443,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019200,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0020015,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035639,GO:0036094,GO:0042579,GO:0042866,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046835,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0061615,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue7.26e-189
EggNOG OGsCOG0205@1|root,KOG2440@2759|Eukaryota
EC2.7.1.11
Description6-phosphofructokinase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6540Ggra6540Gracilaria gracilis GNS1m malegenetig00000081_pilon 215029..216795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6540.t1Ggra6540.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 215029..216795 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6540.t1.start1Ggra6540.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 215029..215031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6540.t1.CDS1Ggra6540.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 215029..216484 +
Ggra6540.t1.CDS2Ggra6540.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 216587..216795 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6540.t1.exon1Ggra6540.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 215029..216484 +
Ggra6540.t1.exon2Ggra6540.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 216587..216795 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6540.t1.intron1Ggra6540.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 216485..216586 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6540.t1.stop1Ggra6540.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 216793..216795 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6540.t1 ID=Ggra6540.t1|Name=Ggra6540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp
MSRPPTPAAPIVRTRTMDSVVIDPDDPLQSRQDLPKVIKHARVSYDDMHT
PISSPRLERFSKIVFPRPCRGLMPVRISDWTNVGSFPSPLQNNPSQLNLG
LSFVGSRETILVDIISDAENTTMSREFVRAGPRSELAFHPANQARPCIVT
CGGLCPGLNSVIRELVITLKNMYRVPRVDGIPFGYRGFYSTHLNITELTE
QRVMDIHHEGGSIIGSSRGGHDTKRICDSILAMGYNQIFIIGGDGTHRGA
VKIFEEVKRRRAMVSVVGIPKTIDNDIALIDKSFGFDTAVEEAQRSIKCA
KIEAKSAINGIGLVKLMGRHSGQIAMFATLASRDVDCCLIPEVHFELDGK
AGLFQYIEDRLRSKGHMVIVVAEGAGLELIEREIPSESVDASGNKKLADV
GLWLKRKIDSDFRSRGREINIKLIDPTYEIRSVPANASDNLHCSLLAQSA
VHGAMHGFSGFSVGLINTHFVLIPMEEICRRGRTRVDVKSRMWHRVIATT
MQPSLSGHSSVSQSLIEAIDGGLRMPKEPLVVDCNTLPTVVEPEDEFDSG
KDSF*
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spliced messenger RNA

>Ggra6540.t1 ID=Ggra6540.t1|Name=Ggra6540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1665bp|location=Sequence derived from alignment at tig00000081_pilon:215029..216795+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGCCCGCCCACCCCGGCCGCGCCCATCGTGCGCACGCGCACTAT
GGACTCGGTCGTCATCGACCCGGACGACCCCCTGCAGTCGCGACAGGACC
TGCCCAAGGTCATCAAGCACGCGCGCGTGTCGTACGACGACATGCACACC
CCCATCTCGTCGCCGCGCCTGGAGCGCTTTTCGAAGATCGTCTTCCCGCG
CCCCTGTCGCGGCTTGATGCCCGTGCGTATCTCCGACTGGACCAACGTGG
GCTCGTTTCCGTCGCCGTTGCAGAACAACCCGTCGCAGCTCAATCTCGGC
CTCAGCTTCGTCGGCTCGCGCGAGACCATCCTGGTCGATATCATCTCTGA
TGCGGAGAATACCACCATGAGCCGCGAGTTTGTGCGCGCTGGGCCGCGTA
GTGAGCTGGCGTTTCACCCGGCGAACCAGGCGCGTCCGTGCATCGTCACC
TGCGGCGGGCTGTGTCCGGGGCTCAATTCGGTCATTCGTGAGCTCGTCAT
CACTCTCAAGAACATGTATCGCGTGCCGCGTGTAGACGGTATTCCGTTTG
GCTATCGCGGCTTTTATAGCACCCACCTCAACATCACCGAGCTCACGGAG
CAGCGCGTGATGGATATCCACCACGAGGGCGGCTCCATCATTGGCTCGTC
GCGCGGAGGGCACGATACAAAACGAATCTGCGACTCCATCCTCGCCATGG
GCTACAACCAGATCTTTATCATTGGCGGCGATGGCACGCACCGAGGCGCC
GTCAAGATCTTTGAAGAGGTCAAGAGACGTCGAGCTATGGTCAGCGTCGT
TGGCATTCCGAAAACCATCGACAATGACATTGCGCTGATCGACAAGAGTT
TTGGGTTCGATACGGCCGTCGAGGAGGCGCAGAGGAGCATCAAGTGTGCC
AAGATTGAGGCAAAGAGCGCCATCAATGGTATTGGGCTAGTGAAGTTGAT
GGGACGTCACTCCGGACAGATTGCGATGTTTGCCACGCTGGCTTCGCGTG
ATGTTGATTGTTGCCTCATTCCAGAGGTGCACTTTGAGTTGGATGGCAAG
GCCGGGCTGTTTCAGTACATCGAGGACAGGCTACGCTCAAAAGGGCATAT
GGTTATTGTGGTTGCGGAGGGAGCCGGACTGGAATTGATTGAACGCGAAA
TACCTTCAGAGTCTGTTGACGCCTCTGGAAACAAGAAGCTGGCAGACGTG
GGACTGTGGCTGAAGCGCAAGATTGACAGCGACTTTAGAAGCCGCGGGCG
TGAGATTAATATCAAGCTCATTGACCCAACGTATGAGATTCGCAGCGTTC
CGGCTAACGCCAGTGATAATTTGCATTGTAGTCTGTTGGCACAATCGGCT
GTGCATGGAGCTATGCACGGCTTCTCGGGCTTTTCGGTGGGTCTGATTAA
CACGCACTTTGTACTGATTCCCATGGAAGAAATTTGTCGGCGTGGACGCA
CAAGAGTTGACGTGAAGAGCCGAATGTGGCACCGTGTTATCGCAACCACA
ATGCAGCCGAGTCTGTCCGGGCACTCAAGCGTGTCACAAAGTTTGATCGA
AGCTATCGATGGCGGTCTGAGGATGCCGAAGGAACCGCTGGTTGTGGACT
GCAATACTCTACCAACGGTTGTAGAACCTGAAGATGAATTCGATAGCGGA
AAGGACTCGTTTTGA
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protein sequence of Ggra6540.t1

>Ggra6540.t1 ID=Ggra6540.t1|Name=Ggra6540.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=555bp
MSRPPTPAAPIVRTRTMDSVVIDPDDPLQSRQDLPKVIKHARVSYDDMHT
PISSPRLERFSKIVFPRPCRGLMPVRISDWTNVGSFPSPLQNNPSQLNLG
LSFVGSRETILVDIISDAENTTMSREFVRAGPRSELAFHPANQARPCIVT
CGGLCPGLNSVIRELVITLKNMYRVPRVDGIPFGYRGFYSTHLNITELTE
QRVMDIHHEGGSIIGSSRGGHDTKRICDSILAMGYNQIFIIGGDGTHRGA
VKIFEEVKRRRAMVSVVGIPKTIDNDIALIDKSFGFDTAVEEAQRSIKCA
KIEAKSAINGIGLVKLMGRHSGQIAMFATLASRDVDCCLIPEVHFELDGK
AGLFQYIEDRLRSKGHMVIVVAEGAGLELIEREIPSESVDASGNKKLADV
GLWLKRKIDSDFRSRGREINIKLIDPTYEIRSVPANASDNLHCSLLAQSA
VHGAMHGFSGFSVGLINTHFVLIPMEEICRRGRTRVDVKSRMWHRVIATT
MQPSLSGHSSVSQSLIEAIDGGLRMPKEPLVVDCNTLPTVVEPEDEFDSG
KDSF*
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mRNA from alignment at tig00000081_pilon:215029..216795+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6540.t1 ID=Ggra6540.t1|Name=Ggra6540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00000081_pilon:215029..216795+ (Gracilaria gracilis GNS1m male)
ATGTCTCGCCCGCCCACCCCGGCCGCGCCCATCGTGCGCACGCGCACTAT
GGACTCGGTCGTCATCGACCCGGACGACCCCCTGCAGTCGCGACAGGACC
TGCCCAAGGTCATCAAGCACGCGCGCGTGTCGTACGACGACATGCACACC
CCCATCTCGTCGCCGCGCCTGGAGCGCTTTTCGAAGATCGTCTTCCCGCG
CCCCTGTCGCGGCTTGATGCCCGTGCGTATCTCCGACTGGACCAACGTGG
GCTCGTTTCCGTCGCCGTTGCAGAACAACCCGTCGCAGCTCAATCTCGGC
CTCAGCTTCGTCGGCTCGCGCGAGACCATCCTGGTCGATATCATCTCTGA
TGCGGAGAATACCACCATGAGCCGCGAGTTTGTGCGCGCTGGGCCGCGTA
GTGAGCTGGCGTTTCACCCGGCGAACCAGGCGCGTCCGTGCATCGTCACC
TGCGGCGGGCTGTGTCCGGGGCTCAATTCGGTCATTCGTGAGCTCGTCAT
CACTCTCAAGAACATGTATCGCGTGCCGCGTGTAGACGGTATTCCGTTTG
GCTATCGCGGCTTTTATAGCACCCACCTCAACATCACCGAGCTCACGGAG
CAGCGCGTGATGGATATCCACCACGAGGGCGGCTCCATCATTGGCTCGTC
GCGCGGAGGGCACGATACAAAACGAATCTGCGACTCCATCCTCGCCATGG
GCTACAACCAGATCTTTATCATTGGCGGCGATGGCACGCACCGAGGCGCC
GTCAAGATCTTTGAAGAGGTCAAGAGACGTCGAGCTATGGTCAGCGTCGT
TGGCATTCCGAAAACCATCGACAATGACATTGCGCTGATCGACAAGAGTT
TTGGGTTCGATACGGCCGTCGAGGAGGCGCAGAGGAGCATCAAGTGTGCC
AAGATTGAGGCAAAGAGCGCCATCAATGGTATTGGGCTAGTGAAGTTGAT
GGGACGTCACTCCGGACAGATTGCGATGTTTGCCACGCTGGCTTCGCGTG
ATGTTGATTGTTGCCTCATTCCAGAGGTGCACTTTGAGTTGGATGGCAAG
GCCGGGCTGTTTCAGTACATCGAGGACAGGCTACGCTCAAAAGGGCATAT
GGTTATTGTGGTTGCGGAGGGAGCCGGACTGGAATTGATTGAACGCGAAA
TACCTTCAGAGTCTGTTGACGCCTCTGGAAACAAGAAGCTGGCAGACGTG
GGACTGTGGCTGAAGCGCAAGATTGACAGCGACTTTAGAAGCCGCGGGCG
TGAGATTAATATCAAGCTCATTGACCCAACGTATGAGATTCGCAGCGTTC
CGGCTAACGCCAGTGATAATTTGCATTGTAGTCTGTTGGCACAATCGGCT
GTGCATGGAGCTATGCACGGCTTCTCGGGCTTTTCGGTGGGTCTGATTAA
CACGCACTTTGTACTGATTCCCATGGAAGAAATTTGTCGGCGTGGACGCA
CAAGAGGTACGTAGAAGAACGCAGCGAGAAGATGGCTGCGATGGTTGCAA
CGCTTTTGTATTTATACTGACtttgtgaactgtgtttgttttgttttgtg
tttgCTAGTTGACGTGAAGAGCCGAATGTGGCACCGTGTTATCGCAACCA
CAATGCAGCCGAGTCTGTCCGGGCACTCAAGCGTGTCACAAAGTTTGATC
GAAGCTATCGATGGCGGTCTGAGGATGCCGAAGGAACCGCTGGTTGTGGA
CTGCAATACTCTACCAACGGTTGTAGAACCTGAAGATGAATTCGATAGCG
GAAAGGACTCGTTTTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:215029..216795+

>Ggra6540.t1 ID=Ggra6540.t1|Name=Ggra6540.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1665bp|location=Sequence derived from alignment at tig00000081_pilon:215029..216795+ (Gracilaria gracilis GNS1m male)
ATGTCTCGCCCGCCCACCCCGGCCGCGCCCATCGTGCGCACGCGCACTAT
GGACTCGGTCGTCATCGACCCGGACGACCCCCTGCAGTCGCGACAGGACC
TGCCCAAGGTCATCAAGCACGCGCGCGTGTCGTACGACGACATGCACACC
CCCATCTCGTCGCCGCGCCTGGAGCGCTTTTCGAAGATCGTCTTCCCGCG
CCCCTGTCGCGGCTTGATGCCCGTGCGTATCTCCGACTGGACCAACGTGG
GCTCGTTTCCGTCGCCGTTGCAGAACAACCCGTCGCAGCTCAATCTCGGC
CTCAGCTTCGTCGGCTCGCGCGAGACCATCCTGGTCGATATCATCTCTGA
TGCGGAGAATACCACCATGAGCCGCGAGTTTGTGCGCGCTGGGCCGCGTA
GTGAGCTGGCGTTTCACCCGGCGAACCAGGCGCGTCCGTGCATCGTCACC
TGCGGCGGGCTGTGTCCGGGGCTCAATTCGGTCATTCGTGAGCTCGTCAT
CACTCTCAAGAACATGTATCGCGTGCCGCGTGTAGACGGTATTCCGTTTG
GCTATCGCGGCTTTTATAGCACCCACCTCAACATCACCGAGCTCACGGAG
CAGCGCGTGATGGATATCCACCACGAGGGCGGCTCCATCATTGGCTCGTC
GCGCGGAGGGCACGATACAAAACGAATCTGCGACTCCATCCTCGCCATGG
GCTACAACCAGATCTTTATCATTGGCGGCGATGGCACGCACCGAGGCGCC
GTCAAGATCTTTGAAGAGGTCAAGAGACGTCGAGCTATGGTCAGCGTCGT
TGGCATTCCGAAAACCATCGACAATGACATTGCGCTGATCGACAAGAGTT
TTGGGTTCGATACGGCCGTCGAGGAGGCGCAGAGGAGCATCAAGTGTGCC
AAGATTGAGGCAAAGAGCGCCATCAATGGTATTGGGCTAGTGAAGTTGAT
GGGACGTCACTCCGGACAGATTGCGATGTTTGCCACGCTGGCTTCGCGTG
ATGTTGATTGTTGCCTCATTCCAGAGGTGCACTTTGAGTTGGATGGCAAG
GCCGGGCTGTTTCAGTACATCGAGGACAGGCTACGCTCAAAAGGGCATAT
GGTTATTGTGGTTGCGGAGGGAGCCGGACTGGAATTGATTGAACGCGAAA
TACCTTCAGAGTCTGTTGACGCCTCTGGAAACAAGAAGCTGGCAGACGTG
GGACTGTGGCTGAAGCGCAAGATTGACAGCGACTTTAGAAGCCGCGGGCG
TGAGATTAATATCAAGCTCATTGACCCAACGTATGAGATTCGCAGCGTTC
CGGCTAACGCCAGTGATAATTTGCATTGTAGTCTGTTGGCACAATCGGCT
GTGCATGGAGCTATGCACGGCTTCTCGGGCTTTTCGGTGGGTCTGATTAA
CACGCACTTTGTACTGATTCCCATGGAAGAAATTTGTCGGCGTGGACGCA
CAAGAGTTGACGTGAAGAGCCGAATGTGGCACCGTGTTATCGCAACCACA
ATGCAGCCGAGTCTGTCCGGGCACTCAAGCGTGTCACAAAGTTTGATCGA
AGCTATCGATGGCGGTCTGAGGATGCCGAAGGAACCGCTGGTTGTGGACT
GCAATACTCTACCAACGGTTGTAGAACCTGAAGATGAATTCGATAGCGGA
AAGGACTCGTTTTGA
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