Ggra6536.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6536.t1
Unique NameGgra6536.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:200277..201182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6536Ggra6536Gracilaria gracilis GNS1m malegenetig00000081_pilon 200277..201182 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6536.t1.start1Ggra6536.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 200277..200279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6536.t1.CDS1Ggra6536.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 200277..201182 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6536.t1.exon1Ggra6536.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 200277..201182 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6536.t1.stop1Ggra6536.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 201180..201182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6536.t1Ggra6536.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 200277..201182 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6536.t1 ID=Ggra6536.t1|Name=Ggra6536.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=302bp
MDLFSAKPEITTAPPLPPYSDADAALHDTIASFIHMTDKMEHILPPDLNL
ATIQQHSSSDELFTPAATPASTAPPSFNLSSSSLSTSPLPNTLAPTSYEA
AQPDSSAVCIATINNALHAAISAQATAPLAQCQTPSCSPCTVRNLSPLNS
VRKRKSTRKPKTYSKPVASRFCHICSRMPRKGQGSATCRRMREGYCRKIV
CEQCVREQGWDYDAIAQNPNDWLCPHCADICPPRSQCHIYNRINARRKKV
GQKRPNSVATALASSDALMRPYAHLLEPSAIQVIQPPPNFRLNLPPHYSQ
P*
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spliced messenger RNA

>Ggra6536.t1 ID=Ggra6536.t1|Name=Ggra6536.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000081_pilon:200277..201182+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTGTTCTCCGCAAAGCCCGAAATCACCACCGCACCCCCTCTTCC
TCCTTACTCCGACGCCGACGCCGCGCTACACGACACAATAGCCTCCTTCA
TACACATGACGGACAAGATGGAACACATTCTACCACCGGATCTAAATCTA
GCCACTATCCAGCAGCACTCCTCCAGCGACGAACTGTTTACGCCGGCCGC
CACCCCCGCGTCCACAGCGCCGCCTTCGTTCAATCTTTCTTCCTCTTCGC
TCAGCACCAGCCCGCTCCCGAACACGCTTGCCCCCACTTCGTACGAGGCT
GCGCAGCCCGACTCATCCGCTGTGTGCATCGCTACCATCAACAACGCTCT
CCATGCCGCCATCTCTGCACAGGCTACTGCGCCGCTGGCACAATGTCAAA
CGCCAAGCTGTTCGCCGTGCACTGTCCGCAACCTCTCTCCTCTCAACAGC
GTGCGTAAGCGCAAGAGCACTCGGAAACCCAAGACGTATTCCAAGCCTGT
CGCGAGCCGTTTCTGTCATATATGCTCGCGAATGCCCAGAAAAGGACAAG
GTAGCGCTACGTGCCGCCGTATGCGCGAAGGGTACTGCAGGAAGATCGTG
TGTGAGCAATGCGTTCGCGAGCAAGGCTGGGACTACGATGCGATTGCGCA
GAATCCCAACGACTGGTTATGCCCACATTGTGCTGATATATGCCCACCAC
GCTCGCAGTGTCATATTTACAACCGGATCAATGCGAGAAGGAAGAAGGTG
GGCCAAAAGCGACCCAACTCTGTGGCCACTGCTCTGGCCAGTTCCGACGC
ATTGATGCGCCCGTACGCACATTTGCTGGAACCGTCGGCTATTCAAGTGA
TTCAGCCGCCGCCGAACTTCCGACTCAACTTGCCGCCGCACTACTCGCAG
CCGTGA
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protein sequence of Ggra6536.t1

>Ggra6536.t1 ID=Ggra6536.t1|Name=Ggra6536.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=302bp
MDLFSAKPEITTAPPLPPYSDADAALHDTIASFIHMTDKMEHILPPDLNL
ATIQQHSSSDELFTPAATPASTAPPSFNLSSSSLSTSPLPNTLAPTSYEA
AQPDSSAVCIATINNALHAAISAQATAPLAQCQTPSCSPCTVRNLSPLNS
VRKRKSTRKPKTYSKPVASRFCHICSRMPRKGQGSATCRRMREGYCRKIV
CEQCVREQGWDYDAIAQNPNDWLCPHCADICPPRSQCHIYNRINARRKKV
GQKRPNSVATALASSDALMRPYAHLLEPSAIQVIQPPPNFRLNLPPHYSQ
P*
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mRNA from alignment at tig00000081_pilon:200277..201182+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6536.t1 ID=Ggra6536.t1|Name=Ggra6536.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000081_pilon:200277..201182+ (Gracilaria gracilis GNS1m male)
ATGGATTTGTTCTCCGCAAAGCCCGAAATCACCACCGCACCCCCTCTTCC
TCCTTACTCCGACGCCGACGCCGCGCTACACGACACAATAGCCTCCTTCA
TACACATGACGGACAAGATGGAACACATTCTACCACCGGATCTAAATCTA
GCCACTATCCAGCAGCACTCCTCCAGCGACGAACTGTTTACGCCGGCCGC
CACCCCCGCGTCCACAGCGCCGCCTTCGTTCAATCTTTCTTCCTCTTCGC
TCAGCACCAGCCCGCTCCCGAACACGCTTGCCCCCACTTCGTACGAGGCT
GCGCAGCCCGACTCATCCGCTGTGTGCATCGCTACCATCAACAACGCTCT
CCATGCCGCCATCTCTGCACAGGCTACTGCGCCGCTGGCACAATGTCAAA
CGCCAAGCTGTTCGCCGTGCACTGTCCGCAACCTCTCTCCTCTCAACAGC
GTGCGTAAGCGCAAGAGCACTCGGAAACCCAAGACGTATTCCAAGCCTGT
CGCGAGCCGTTTCTGTCATATATGCTCGCGAATGCCCAGAAAAGGACAAG
GTAGCGCTACGTGCCGCCGTATGCGCGAAGGGTACTGCAGGAAGATCGTG
TGTGAGCAATGCGTTCGCGAGCAAGGCTGGGACTACGATGCGATTGCGCA
GAATCCCAACGACTGGTTATGCCCACATTGTGCTGATATATGCCCACCAC
GCTCGCAGTGTCATATTTACAACCGGATCAATGCGAGAAGGAAGAAGGTG
GGCCAAAAGCGACCCAACTCTGTGGCCACTGCTCTGGCCAGTTCCGACGC
ATTGATGCGCCCGTACGCACATTTGCTGGAACCGTCGGCTATTCAAGTGA
TTCAGCCGCCGCCGAACTTCCGACTCAACTTGCCGCCGCACTACTCGCAG
CCGTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:200277..201182+

>Ggra6536.t1 ID=Ggra6536.t1|Name=Ggra6536.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=906bp|location=Sequence derived from alignment at tig00000081_pilon:200277..201182+ (Gracilaria gracilis GNS1m male)
ATGGATTTGTTCTCCGCAAAGCCCGAAATCACCACCGCACCCCCTCTTCC
TCCTTACTCCGACGCCGACGCCGCGCTACACGACACAATAGCCTCCTTCA
TACACATGACGGACAAGATGGAACACATTCTACCACCGGATCTAAATCTA
GCCACTATCCAGCAGCACTCCTCCAGCGACGAACTGTTTACGCCGGCCGC
CACCCCCGCGTCCACAGCGCCGCCTTCGTTCAATCTTTCTTCCTCTTCGC
TCAGCACCAGCCCGCTCCCGAACACGCTTGCCCCCACTTCGTACGAGGCT
GCGCAGCCCGACTCATCCGCTGTGTGCATCGCTACCATCAACAACGCTCT
CCATGCCGCCATCTCTGCACAGGCTACTGCGCCGCTGGCACAATGTCAAA
CGCCAAGCTGTTCGCCGTGCACTGTCCGCAACCTCTCTCCTCTCAACAGC
GTGCGTAAGCGCAAGAGCACTCGGAAACCCAAGACGTATTCCAAGCCTGT
CGCGAGCCGTTTCTGTCATATATGCTCGCGAATGCCCAGAAAAGGACAAG
GTAGCGCTACGTGCCGCCGTATGCGCGAAGGGTACTGCAGGAAGATCGTG
TGTGAGCAATGCGTTCGCGAGCAAGGCTGGGACTACGATGCGATTGCGCA
GAATCCCAACGACTGGTTATGCCCACATTGTGCTGATATATGCCCACCAC
GCTCGCAGTGTCATATTTACAACCGGATCAATGCGAGAAGGAAGAAGGTG
GGCCAAAAGCGACCCAACTCTGTGGCCACTGCTCTGGCCAGTTCCGACGC
ATTGATGCGCCCGTACGCACATTTGCTGGAACCGTCGGCTATTCAAGTGA
TTCAGCCGCCGCCGAACTTCCGACTCAACTTGCCGCCGCACTACTCGCAG
CCGTGA
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