Ggra6530.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6530.t1
Unique NameGgra6530.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length94
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:177173..177554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1CUC0
PFAMsSPT_ssu-like
Max annot lvl4751|Fungi
Evalue2.08e-06
EggNOG OGs29P11@1|root,2RWCC@2759|Eukaryota,39IWZ@33154|Opisthokonta,3Q2PI@4751|Fungi,1GXWB@112252|Fungi incertae sedis
DescriptionSmall subunit of serine palmitoyltransferase-like
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6530Ggra6530Gracilaria gracilis GNS1m malegenetig00000081_pilon 177173..177554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6530.t1Ggra6530.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 177173..177554 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6530.t1.stop1Ggra6530.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 177173..177175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6530.t1.CDS1Ggra6530.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 177173..177335 -
Ggra6530.t1.CDS2Ggra6530.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 177436..177554 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6530.t1.exon1Ggra6530.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 177173..177335 -
Ggra6530.t1.exon2Ggra6530.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 177436..177554 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6530.t1.intron1Ggra6530.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 177336..177435 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6530.t1.start1Ggra6530.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 177552..177554 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6530.t1 ID=Ggra6530.t1|Name=Ggra6530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=94bp
MTRQATVVAPSSSLHHTYGTAPATLPPPSTRTLKQSLNLWIYRYNLSTAL
YMLQPWERALFNIIVIAILAYIVYGLYYAALHPLFERLAISYM*
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spliced messenger RNA

>Ggra6530.t1 ID=Ggra6530.t1|Name=Ggra6530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=282bp|location=Sequence derived from alignment at tig00000081_pilon:177173..177554- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGACAAGCCACCGTAGTCGCGCCGTCATCAAGCCTACACCACAC
ATATGGCACTGCTCCCGCAACTCTTCCACCGCCATCGACCCGTACGTTGA
AGCAGTCCCTCAATTTATGGATCTATCGGTACAATCTTAGCACAGCACTT
TATATGCTACAACCGTGGGAACGAGCACTCTTCAACATCATCGTTATTGC
CATTCTTGCGTACATCGTATACGGCCTTTATTACGCTGCGCTCCATCCGC
TCTTCGAAAGACTCGCAATTTCGTACATGTAG
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protein sequence of Ggra6530.t1

>Ggra6530.t1 ID=Ggra6530.t1|Name=Ggra6530.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=94bp
MTRQATVVAPSSSLHHTYGTAPATLPPPSTRTLKQSLNLWIYRYNLSTAL
YMLQPWERALFNIIVIAILAYIVYGLYYAALHPLFERLAISYM*
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mRNA from alignment at tig00000081_pilon:177173..177554-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6530.t1 ID=Ggra6530.t1|Name=Ggra6530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp|location=Sequence derived from alignment at tig00000081_pilon:177173..177554- (Gracilaria gracilis GNS1m male)
ATGACTCGACAAGCCACCGTAGTCGCGCCGTCATCAAGCCTACACCACAC
ATATGGCACTGCTCCCGCAACTCTTCCACCGCCATCGACCCGTACGTTGA
AGCAGTCCCTCAATTTATGGTAAGTACCAACCCCCTCGATAACAACTCAA
ATCGGTACCTTGTTCGCACCCAATCTTACATGTGATTGTTCCTCATTATT
CTCAACGCCCTTCCACCAGGATCTATCGGTACAATCTTAGCACAGCACTT
TATATGCTACAACCGTGGGAACGAGCACTCTTCAACATCATCGTTATTGC
CATTCTTGCGTACATCGTATACGGCCTTTATTACGCTGCGCTCCATCCGC
TCTTCGAAAGACTCGCAATTTCGTACATGTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:177173..177554-

>Ggra6530.t1 ID=Ggra6530.t1|Name=Ggra6530.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=282bp|location=Sequence derived from alignment at tig00000081_pilon:177173..177554- (Gracilaria gracilis GNS1m male)
ATGACTCGACAAGCCACCGTAGTCGCGCCGTCATCAAGCCTACACCACAC
ATATGGCACTGCTCCCGCAACTCTTCCACCGCCATCGACCCGTACGTTGA
AGCAGTCCCTCAATTTATGGATCTATCGGTACAATCTTAGCACAGCACTT
TATATGCTACAACCGTGGGAACGAGCACTCTTCAACATCATCGTTATTGC
CATTCTTGCGTACATCGTATACGGCCTTTATTACGCTGCGCTCCATCCGC
TCTTCGAAAGACTCGCAATTTCGTACATGTAG
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