Ggra6527.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6527.t1
Unique NameGgra6527.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length505
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:157043..158557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7220.FBpp0135843
PFAMszf-AD,zf-C2H2,zf-C2H2_4,zf-C2H2_6,zf-met
Max annot lvl33208|Metazoa
KEGG koko:K22402
GOsGO:0000122,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue1.83e-05
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,3A0BC@33154|Opisthokonta,3BQ1Z@33208|Metazoa,3D6UM@33213|Bilateria,41Z1S@6656|Arthropoda,3SFZD@50557|Insecta,451JW@7147|Diptera,45PHM@7214|Drosophilidae
Descriptionnucleic acid binding
COG categoryK
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6527Ggra6527Gracilaria gracilis GNS1m malegenetig00000081_pilon 157043..158557 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6527.t1.stop1Ggra6527.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 157043..157045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6527.t1.CDS1Ggra6527.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 157043..158557 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6527.t1.exon1Ggra6527.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 157043..158557 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6527.t1.start1Ggra6527.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 158555..158557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6527.t1Ggra6527.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 157043..158557 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6527.t1 ID=Ggra6527.t1|Name=Ggra6527.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=505bp
MESRYANIPPNSSRVIPDRSSPPFVSGSHGTGGQYPPSHNRDRLPSVRSI
VMGTSLAEATSNAIQLPPPRPVPYQRAIEVLPSPRYYSNSAYGQQSNVWS
HGYYDDNRNPSVFNQVHGSFPQENAAYNVYPQHIQVPPPPAVVTTQSTPM
DSNMGYRVNTVPMPRLMEPTVNPYYRSPHMHMADTRTPPVQDRYATAGTA
PHVPTAGIQNTPRTMMTAGCANLESTGERLGPRNGANEQGLGSSLSQHHG
IPHSLPVGASSYPYASMYYQQGGYQYQQLDNAARESQPSTEPNVRYIELG
SYGITEAFLSHITARAWMDTENSIRCTECEEEFGNVASWKRHASRSHRKV
RTPKVKCPICSIEVKSEGNIKRHLKTVHKSVPDPLVCTHCPAMFSSDRAR
SIHVMRIHSVQVPVETDLSACGGVPDKQGKRRRAGTQVGKPKMHKCPNCD
YMSRWKGNISRHVNAVHLQLRQFPCDICDRRFNTASNLTVHKLTHLRDSD
PGTP*
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spliced messenger RNA

>Ggra6527.t1 ID=Ggra6527.t1|Name=Ggra6527.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000081_pilon:157043..158557- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCCAGGTATGCCAACATCCCCCCGAACTCTTCACGGGTCATACC
TGACCGATCATCCCCGCCGTTTGTTTCCGGATCACATGGCACCGGCGGCC
AGTATCCACCGTCCCACAACCGCGACAGACTCCCGTCTGTCCGGAGCATT
GTAATGGGTACTTCCTTGGCCGAGGCTACCTCGAACGCGATACAACTACC
GCCTCCTCGCCCTGTACCTTATCAAAGAGCCATCGAGGTTTTGCCGTCTC
CGAGATACTACTCGAATAGTGCATACGGTCAACAGTCGAACGTTTGGAGT
CACGGTTATTACGACGACAACCGAAATCCATCCGTTTTCAACCAGGTACA
CGGATCCTTCCCCCAAGAGAACGCGGCCTACAACGTCTACCCTCAGCACA
TTCAGGTTCCCCCACCGCCTGCTGTTGTCACCACGCAATCAACGCCGATG
GACTCTAATATGGGATACAGAGTTAATACTGTACCCATGCCGCGGCTGAT
GGAACCGACTGTGAATCCGTACTACCGTAGTCCTCACATGCATATGGCCG
ACACAAGAACACCCCCGGTACAAGATCGATATGCAACTGCTGGAACTGCT
CCTCATGTTCCCACAGCTGGAATACAAAACACTCCCAGAACCATGATGAC
GGCGGGCTGTGCCAATCTAGAGTCAACTGGTGAGCGCCTTGGCCCTAGGA
ATGGAGCCAATGAGCAAGGACTTGGTTCATCTCTTTCGCAGCATCATGGA
ATACCACACTCGCTTCCAGTAGGAGCTTCTAGTTATCCGTATGCTTCGAT
GTACTACCAGCAGGGTGGATATCAATACCAGCAGCTCGATAATGCCGCTC
GCGAAAGCCAACCAAGTACCGAACCGAATGTGAGATACATTGAGTTGGGT
TCTTATGGAATAACTGAAGCTTTCCTCTCACATATAACGGCCCGGGCGTG
GATGGATACGGAAAATAGTATCAGGTGCACTGAATGTGAGGAAGAATTCG
GTAACGTGGCTTCGTGGAAGAGACATGCATCGCGATCACATCGGAAGGTA
CGCACGCCGAAGGTAAAATGTCCGATCTGCTCAATTGAAGTCAAGAGCGA
AGGGAACATAAAACGGCATCTTAAAACGGTACACAAGTCCGTTCCCGACC
CGCTCGTTTGCACACACTGTCCGGCTATGTTCTCATCGGATCGGGCACGT
TCGATCCACGTGATGCGGATTCACTCGGTGCAGGTGCCGGTTGAAACCGA
TCTATCCGCCTGCGGAGGGGTTCCCGACAAGCAAGGGAAACGAAGACGAG
CGGGGACACAGGTGGGGAAGCCGAAGATGCACAAGTGCCCGAACTGCGAT
TATATGTCACGATGGAAGGGAAATATCTCGCGACACGTGAACGCCGTCCA
TCTCCAGCTTCGACAGTTTCCATGTGACATCTGCGATCGAAGATTCAACA
CGGCCAGTAATCTCACCGTTCACAAACTGACACATCTGAGAGATTCTGAT
CCCGGTACTCCGTAG
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protein sequence of Ggra6527.t1

>Ggra6527.t1 ID=Ggra6527.t1|Name=Ggra6527.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=505bp
MESRYANIPPNSSRVIPDRSSPPFVSGSHGTGGQYPPSHNRDRLPSVRSI
VMGTSLAEATSNAIQLPPPRPVPYQRAIEVLPSPRYYSNSAYGQQSNVWS
HGYYDDNRNPSVFNQVHGSFPQENAAYNVYPQHIQVPPPPAVVTTQSTPM
DSNMGYRVNTVPMPRLMEPTVNPYYRSPHMHMADTRTPPVQDRYATAGTA
PHVPTAGIQNTPRTMMTAGCANLESTGERLGPRNGANEQGLGSSLSQHHG
IPHSLPVGASSYPYASMYYQQGGYQYQQLDNAARESQPSTEPNVRYIELG
SYGITEAFLSHITARAWMDTENSIRCTECEEEFGNVASWKRHASRSHRKV
RTPKVKCPICSIEVKSEGNIKRHLKTVHKSVPDPLVCTHCPAMFSSDRAR
SIHVMRIHSVQVPVETDLSACGGVPDKQGKRRRAGTQVGKPKMHKCPNCD
YMSRWKGNISRHVNAVHLQLRQFPCDICDRRFNTASNLTVHKLTHLRDSD
PGTP*
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mRNA from alignment at tig00000081_pilon:157043..158557-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6527.t1 ID=Ggra6527.t1|Name=Ggra6527.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000081_pilon:157043..158557- (Gracilaria gracilis GNS1m male)
ATGGAATCCAGGTATGCCAACATCCCCCCGAACTCTTCACGGGTCATACC
TGACCGATCATCCCCGCCGTTTGTTTCCGGATCACATGGCACCGGCGGCC
AGTATCCACCGTCCCACAACCGCGACAGACTCCCGTCTGTCCGGAGCATT
GTAATGGGTACTTCCTTGGCCGAGGCTACCTCGAACGCGATACAACTACC
GCCTCCTCGCCCTGTACCTTATCAAAGAGCCATCGAGGTTTTGCCGTCTC
CGAGATACTACTCGAATAGTGCATACGGTCAACAGTCGAACGTTTGGAGT
CACGGTTATTACGACGACAACCGAAATCCATCCGTTTTCAACCAGGTACA
CGGATCCTTCCCCCAAGAGAACGCGGCCTACAACGTCTACCCTCAGCACA
TTCAGGTTCCCCCACCGCCTGCTGTTGTCACCACGCAATCAACGCCGATG
GACTCTAATATGGGATACAGAGTTAATACTGTACCCATGCCGCGGCTGAT
GGAACCGACTGTGAATCCGTACTACCGTAGTCCTCACATGCATATGGCCG
ACACAAGAACACCCCCGGTACAAGATCGATATGCAACTGCTGGAACTGCT
CCTCATGTTCCCACAGCTGGAATACAAAACACTCCCAGAACCATGATGAC
GGCGGGCTGTGCCAATCTAGAGTCAACTGGTGAGCGCCTTGGCCCTAGGA
ATGGAGCCAATGAGCAAGGACTTGGTTCATCTCTTTCGCAGCATCATGGA
ATACCACACTCGCTTCCAGTAGGAGCTTCTAGTTATCCGTATGCTTCGAT
GTACTACCAGCAGGGTGGATATCAATACCAGCAGCTCGATAATGCCGCTC
GCGAAAGCCAACCAAGTACCGAACCGAATGTGAGATACATTGAGTTGGGT
TCTTATGGAATAACTGAAGCTTTCCTCTCACATATAACGGCCCGGGCGTG
GATGGATACGGAAAATAGTATCAGGTGCACTGAATGTGAGGAAGAATTCG
GTAACGTGGCTTCGTGGAAGAGACATGCATCGCGATCACATCGGAAGGTA
CGCACGCCGAAGGTAAAATGTCCGATCTGCTCAATTGAAGTCAAGAGCGA
AGGGAACATAAAACGGCATCTTAAAACGGTACACAAGTCCGTTCCCGACC
CGCTCGTTTGCACACACTGTCCGGCTATGTTCTCATCGGATCGGGCACGT
TCGATCCACGTGATGCGGATTCACTCGGTGCAGGTGCCGGTTGAAACCGA
TCTATCCGCCTGCGGAGGGGTTCCCGACAAGCAAGGGAAACGAAGACGAG
CGGGGACACAGGTGGGGAAGCCGAAGATGCACAAGTGCCCGAACTGCGAT
TATATGTCACGATGGAAGGGAAATATCTCGCGACACGTGAACGCCGTCCA
TCTCCAGCTTCGACAGTTTCCATGTGACATCTGCGATCGAAGATTCAACA
CGGCCAGTAATCTCACCGTTCACAAACTGACACATCTGAGAGATTCTGAT
CCCGGTACTCCGTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:157043..158557-

>Ggra6527.t1 ID=Ggra6527.t1|Name=Ggra6527.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1515bp|location=Sequence derived from alignment at tig00000081_pilon:157043..158557- (Gracilaria gracilis GNS1m male)
ATGGAATCCAGGTATGCCAACATCCCCCCGAACTCTTCACGGGTCATACC
TGACCGATCATCCCCGCCGTTTGTTTCCGGATCACATGGCACCGGCGGCC
AGTATCCACCGTCCCACAACCGCGACAGACTCCCGTCTGTCCGGAGCATT
GTAATGGGTACTTCCTTGGCCGAGGCTACCTCGAACGCGATACAACTACC
GCCTCCTCGCCCTGTACCTTATCAAAGAGCCATCGAGGTTTTGCCGTCTC
CGAGATACTACTCGAATAGTGCATACGGTCAACAGTCGAACGTTTGGAGT
CACGGTTATTACGACGACAACCGAAATCCATCCGTTTTCAACCAGGTACA
CGGATCCTTCCCCCAAGAGAACGCGGCCTACAACGTCTACCCTCAGCACA
TTCAGGTTCCCCCACCGCCTGCTGTTGTCACCACGCAATCAACGCCGATG
GACTCTAATATGGGATACAGAGTTAATACTGTACCCATGCCGCGGCTGAT
GGAACCGACTGTGAATCCGTACTACCGTAGTCCTCACATGCATATGGCCG
ACACAAGAACACCCCCGGTACAAGATCGATATGCAACTGCTGGAACTGCT
CCTCATGTTCCCACAGCTGGAATACAAAACACTCCCAGAACCATGATGAC
GGCGGGCTGTGCCAATCTAGAGTCAACTGGTGAGCGCCTTGGCCCTAGGA
ATGGAGCCAATGAGCAAGGACTTGGTTCATCTCTTTCGCAGCATCATGGA
ATACCACACTCGCTTCCAGTAGGAGCTTCTAGTTATCCGTATGCTTCGAT
GTACTACCAGCAGGGTGGATATCAATACCAGCAGCTCGATAATGCCGCTC
GCGAAAGCCAACCAAGTACCGAACCGAATGTGAGATACATTGAGTTGGGT
TCTTATGGAATAACTGAAGCTTTCCTCTCACATATAACGGCCCGGGCGTG
GATGGATACGGAAAATAGTATCAGGTGCACTGAATGTGAGGAAGAATTCG
GTAACGTGGCTTCGTGGAAGAGACATGCATCGCGATCACATCGGAAGGTA
CGCACGCCGAAGGTAAAATGTCCGATCTGCTCAATTGAAGTCAAGAGCGA
AGGGAACATAAAACGGCATCTTAAAACGGTACACAAGTCCGTTCCCGACC
CGCTCGTTTGCACACACTGTCCGGCTATGTTCTCATCGGATCGGGCACGT
TCGATCCACGTGATGCGGATTCACTCGGTGCAGGTGCCGGTTGAAACCGA
TCTATCCGCCTGCGGAGGGGTTCCCGACAAGCAAGGGAAACGAAGACGAG
CGGGGACACAGGTGGGGAAGCCGAAGATGCACAAGTGCCCGAACTGCGAT
TATATGTCACGATGGAAGGGAAATATCTCGCGACACGTGAACGCCGTCCA
TCTCCAGCTTCGACAGTTTCCATGTGACATCTGCGATCGAAGATTCAACA
CGGCCAGTAATCTCACCGTTCACAAACTGACACATCTGAGAGATTCTGAT
CCCGGTACTCCGTAG
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