Ggra6508.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6508.t1
Unique NameGgra6508.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:573295..573774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6500.XP_005096337.1
PFAMsAlpha_kinase
Max annot lvl33208|Metazoa
Evalue2.91e-05
EggNOG OGs2CYGU@1|root,2S4BB@2759|Eukaryota,39VJ2@33154|Opisthokonta,3BWIE@33208|Metazoa,3DJ27@33213|Bilateria
DescriptionAlpha-kinase family
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6508Ggra6508Gracilaria gracilis GNS1m malegenetig00000074_pilon 573295..573774 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6508.t1.start1Ggra6508.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 573295..573297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6508.t1.CDS1Ggra6508.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 573295..573774 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6508.t1.exon1Ggra6508.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 573295..573774 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6508.t1.stop1Ggra6508.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 573772..573774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6508.t1Ggra6508.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 573295..573774 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6508.t1 ID=Ggra6508.t1|Name=Ggra6508.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=160bp
MREAKDCSKVVEAFLNEVDTGGWKVKVLMPRKMKMNHCHGHSAIVEPFLE
DYYTFYKSAKDIRKMGSHSSDKVLQALLHFSIIKSKKKQMMTNLEGYVDE
KKKTIFLSGPVIRKDGQESSHGKEADISTFLKRHECSSMCKKFEEPKSPR
RKRFLFIPA*
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spliced messenger RNA

>Ggra6508.t1 ID=Ggra6508.t1|Name=Ggra6508.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000074_pilon:573295..573774+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGAAGCAAAAGATTGTTCCAAAGTGGTCGAAGCGTTCCTGAACGA
AGTGGACACGGGTGGTTGGAAAGTGAAGGTTCTCATGCCAAGGAAAATGA
AGATGAATCATTGTCATGGCCATTCAGCGATCGTGGAACCGTTCCTCGAA
GACTACTATACTTTCTACAAGAGTGCAAAGGATATTCGAAAGATGGGTTC
TCACTCCTCCGATAAAGTTCTGCAGGCGTTGCTTCACTTCAGCATCATTA
AGAGTAAAAAGAAGCAAATGATGACCAATCTTGAGGGATATGTCGATGAG
AAAAAGAAGACTATCTTCCTTTCAGGTCCGGTAATCAGAAAAGATGGACA
GGAGAGTTCGCATGGGAAGGAAGCTGATATATCGACGTTCTTGAAAAGAC
ATGAATGTTCTAGTATGTGTAAGAAGTTTGAGGAGCCAAAGAGCCCAAGG
AGGAAGCGTTTCCTCTTCATACCAGCATAA
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protein sequence of Ggra6508.t1

>Ggra6508.t1 ID=Ggra6508.t1|Name=Ggra6508.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=160bp
MREAKDCSKVVEAFLNEVDTGGWKVKVLMPRKMKMNHCHGHSAIVEPFLE
DYYTFYKSAKDIRKMGSHSSDKVLQALLHFSIIKSKKKQMMTNLEGYVDE
KKKTIFLSGPVIRKDGQESSHGKEADISTFLKRHECSSMCKKFEEPKSPR
RKRFLFIPA*
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mRNA from alignment at tig00000074_pilon:573295..573774+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6508.t1 ID=Ggra6508.t1|Name=Ggra6508.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000074_pilon:573295..573774+ (Gracilaria gracilis GNS1m male)
ATGCGTGAAGCAAAAGATTGTTCCAAAGTGGTCGAAGCGTTCCTGAACGA
AGTGGACACGGGTGGTTGGAAAGTGAAGGTTCTCATGCCAAGGAAAATGA
AGATGAATCATTGTCATGGCCATTCAGCGATCGTGGAACCGTTCCTCGAA
GACTACTATACTTTCTACAAGAGTGCAAAGGATATTCGAAAGATGGGTTC
TCACTCCTCCGATAAAGTTCTGCAGGCGTTGCTTCACTTCAGCATCATTA
AGAGTAAAAAGAAGCAAATGATGACCAATCTTGAGGGATATGTCGATGAG
AAAAAGAAGACTATCTTCCTTTCAGGTCCGGTAATCAGAAAAGATGGACA
GGAGAGTTCGCATGGGAAGGAAGCTGATATATCGACGTTCTTGAAAAGAC
ATGAATGTTCTAGTATGTGTAAGAAGTTTGAGGAGCCAAAGAGCCCAAGG
AGGAAGCGTTTCCTCTTCATACCAGCATAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:573295..573774+

>Ggra6508.t1 ID=Ggra6508.t1|Name=Ggra6508.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=480bp|location=Sequence derived from alignment at tig00000074_pilon:573295..573774+ (Gracilaria gracilis GNS1m male)
ATGCGTGAAGCAAAAGATTGTTCCAAAGTGGTCGAAGCGTTCCTGAACGA
AGTGGACACGGGTGGTTGGAAAGTGAAGGTTCTCATGCCAAGGAAAATGA
AGATGAATCATTGTCATGGCCATTCAGCGATCGTGGAACCGTTCCTCGAA
GACTACTATACTTTCTACAAGAGTGCAAAGGATATTCGAAAGATGGGTTC
TCACTCCTCCGATAAAGTTCTGCAGGCGTTGCTTCACTTCAGCATCATTA
AGAGTAAAAAGAAGCAAATGATGACCAATCTTGAGGGATATGTCGATGAG
AAAAAGAAGACTATCTTCCTTTCAGGTCCGGTAATCAGAAAAGATGGACA
GGAGAGTTCGCATGGGAAGGAAGCTGATATATCGACGTTCTTGAAAAGAC
ATGAATGTTCTAGTATGTGTAAGAAGTTTGAGGAGCCAAAGAGCCCAAGG
AGGAAGCGTTTCCTCTTCATACCAGCATAA
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