Ggra6495.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6495.t1
Unique Name	Ggra6495.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	439

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000074_pilon	contig	tig00000074_pilon:454821..456137 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708907.1
PFAMs	Glucokinase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00017
KEGG ko	ko:K00845
KEGG Reaction	R00299,R01600,R01786
KEGG Pathway	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200
KEGG Module	M00001,M00549
Evalue	8.78e-108
EggNOG OGs	COG0837@1\|root,2QSB1@2759\|Eukaryota
EC	2.7.1.2
Description	Glucokinase
COG category	G
BiGG Reaction	iRC1080.CRv4_Au5_s1_g1623_t1
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6495	Ggra6495	Gracilaria gracilis GNS1m male	gene	tig00000074_pilon 454821..456137 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6495.t1.stop1	Ggra6495.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000074_pilon 454821..454823 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6495.t1.CDS1	Ggra6495.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000074_pilon 454821..456137 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6495.t1.exon1	Ggra6495.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000074_pilon 454821..456137 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6495.t1.start1	Ggra6495.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000074_pilon 456135..456137 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6495.t1	Ggra6495.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000074_pilon 454821..456137 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000074_pilon:454821..456137-
coding sequence from alignment at tig00000074_pilon:454821..456137-

mRNA sequence

>Ggra6495.t1 ID=Ggra6495.t1|Name=Ggra6495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=439bp
MRLLVGDIGGTNARLLLYEAPDNYNELSDYKKVTSQSVISQKYYKNNDFE
SFTQVLWTFFSLPANANLKVHSCCLAVAGPVANNHINFTNREGWIIDGYA
IEEEFGIDSVILINDFVANGYGLLSLTEEELVTLKQGNPSAPDIFSAPVA
LVGAGTGLGECFLTPNKDGTVTAYPTEGGHVEFAPRSKLEQELLSFLEKR
LDTKQPKGNDDYSDADLLPRVSVERLVSGKGLENIYEFLREKYPDQVNEA
FDQMYQSSTEKGRLIGSEKYNYHLFMRALQIMFAIYGGEVGNVALKYLPY
GGIYVAGGIAPKNIEFIKSHDSDFVLRFEDKGRMSSLMPEFPLYVVMKED
LGLRGAHNLASQNAAKLVSGEESLKGDVVAEVVPKMVSRESSLSMSQAIR
EAISSYPLTYAVVTSMTAAVTAAACVGVFQTLRKMKRL*

spliced messenger RNA

>Ggra6495.t1 ID=Ggra6495.t1|Name=Ggra6495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000074_pilon:454821..456137- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACTTCTAGTTGGTGATATCGGAGGCACCAACGCCCGCTTGCTGCT
TTATGAGGCCCCAGACAATTATAATGAGCTATCTGACTATAAGAAAGTAA
CCTCTCAGAGCGTCATTTCTCAGAAGTATTACAAGAACAATGACTTCGAG
TCGTTCACCCAAGTTCTTTGGACCTTTTTTTCACTTCCGGCAAATGCAAA
TCTGAAGGTCCACAGTTGCTGCCTGGCAGTTGCGGGACCTGTCGCGAATA
ATCATATCAATTTCACCAACCGTGAAGGGTGGATCATCGATGGGTATGCT
ATCGAGGAAGAATTCGGCATTGACTCAGTTATCCTCATCAATGACTTTGT
AGCGAACGGTTATGGCTTACTTTCTTTGACAGAGGAAGAACTAGTCACTC
TCAAGCAAGGAAATCCGTCCGCACCGGACATTTTTTCGGCGCCTGTAGCA
CTCGTTGGCGCTGGCACTGGATTAGGTGAGTGCTTTTTGACTCCAAACAA
GGATGGAACTGTAACAGCATATCCTACTGAAGGTGGTCATGTCGAGTTCG
CTCCACGTTCAAAGCTTGAGCAGGAGCTGTTATCCTTTCTTGAAAAACGT
TTGGATACAAAACAACCAAAGGGCAACGATGATTACTCAGATGCGGACCT
ACTCCCTCGCGTTAGCGTCGAGCGACTCGTATCTGGGAAGGGACTTGAGA
ACATCTACGAATTCCTGCGGGAGAAGTACCCAGATCAGGTAAACGAGGCA
TTTGATCAAATGTATCAGAGTTCGACAGAGAAAGGCCGTTTGATCGGTTC
TGAGAAGTACAACTACCACCTTTTCATGCGAGCGCTTCAAATTATGTTCG
CTATCTACGGTGGGGAAGTCGGGAACGTGGCGCTTAAGTATCTGCCATAT
GGCGGTATATATGTAGCTGGTGGTATTGCACCGAAGAACATTGAGTTCAT
CAAAAGTCATGACTCGGACTTTGTCTTGCGATTTGAAGATAAGGGGAGAA
TGAGTAGCCTGATGCCGGAGTTTCCTTTGTATGTCGTCATGAAGGAAGAT
CTGGGTCTTCGAGGGGCACACAATCTAGCATCACAAAACGCTGCCAAACT
TGTTTCCGGAGAAGAAAGCTTGAAGGGAGACGTCGTAGCGGAGGTTGTTC
CGAAGATGGTATCGCGTGAGTCAAGCCTCTCCATGTCTCAGGCCATTCGC
GAAGCGATTTCTTCTTATCCATTGACGTACGCAGTGGTGACGAGTATGAC
AGCGGCGGTAACTGCGGCGGCGTGCGTTGGTGTATTTCAGACTTTGCGAA
AGATGAAACGCCTCTGA

protein sequence of Ggra6495.t1

>Ggra6495.t1 ID=Ggra6495.t1|Name=Ggra6495.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=439bp
MRLLVGDIGGTNARLLLYEAPDNYNELSDYKKVTSQSVISQKYYKNNDFE
SFTQVLWTFFSLPANANLKVHSCCLAVAGPVANNHINFTNREGWIIDGYA
IEEEFGIDSVILINDFVANGYGLLSLTEEELVTLKQGNPSAPDIFSAPVA
LVGAGTGLGECFLTPNKDGTVTAYPTEGGHVEFAPRSKLEQELLSFLEKR
LDTKQPKGNDDYSDADLLPRVSVERLVSGKGLENIYEFLREKYPDQVNEA
FDQMYQSSTEKGRLIGSEKYNYHLFMRALQIMFAIYGGEVGNVALKYLPY
GGIYVAGGIAPKNIEFIKSHDSDFVLRFEDKGRMSSLMPEFPLYVVMKED
LGLRGAHNLASQNAAKLVSGEESLKGDVVAEVVPKMVSRESSLSMSQAIR
EAISSYPLTYAVVTSMTAAVTAAACVGVFQTLRKMKRL*

mRNA from alignment at tig00000074_pilon:454821..456137-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6495.t1 ID=Ggra6495.t1|Name=Ggra6495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000074_pilon:454821..456137- (Gracilaria gracilis GNS1m male)
ATGAGACTTCTAGTTGGTGATATCGGAGGCACCAACGCCCGCTTGCTGCT
TTATGAGGCCCCAGACAATTATAATGAGCTATCTGACTATAAGAAAGTAA
CCTCTCAGAGCGTCATTTCTCAGAAGTATTACAAGAACAATGACTTCGAG
TCGTTCACCCAAGTTCTTTGGACCTTTTTTTCACTTCCGGCAAATGCAAA
TCTGAAGGTCCACAGTTGCTGCCTGGCAGTTGCGGGACCTGTCGCGAATA
ATCATATCAATTTCACCAACCGTGAAGGGTGGATCATCGATGGGTATGCT
ATCGAGGAAGAATTCGGCATTGACTCAGTTATCCTCATCAATGACTTTGT
AGCGAACGGTTATGGCTTACTTTCTTTGACAGAGGAAGAACTAGTCACTC
TCAAGCAAGGAAATCCGTCCGCACCGGACATTTTTTCGGCGCCTGTAGCA
CTCGTTGGCGCTGGCACTGGATTAGGTGAGTGCTTTTTGACTCCAAACAA
GGATGGAACTGTAACAGCATATCCTACTGAAGGTGGTCATGTCGAGTTCG
CTCCACGTTCAAAGCTTGAGCAGGAGCTGTTATCCTTTCTTGAAAAACGT
TTGGATACAAAACAACCAAAGGGCAACGATGATTACTCAGATGCGGACCT
ACTCCCTCGCGTTAGCGTCGAGCGACTCGTATCTGGGAAGGGACTTGAGA
ACATCTACGAATTCCTGCGGGAGAAGTACCCAGATCAGGTAAACGAGGCA
TTTGATCAAATGTATCAGAGTTCGACAGAGAAAGGCCGTTTGATCGGTTC
TGAGAAGTACAACTACCACCTTTTCATGCGAGCGCTTCAAATTATGTTCG
CTATCTACGGTGGGGAAGTCGGGAACGTGGCGCTTAAGTATCTGCCATAT
GGCGGTATATATGTAGCTGGTGGTATTGCACCGAAGAACATTGAGTTCAT
CAAAAGTCATGACTCGGACTTTGTCTTGCGATTTGAAGATAAGGGGAGAA
TGAGTAGCCTGATGCCGGAGTTTCCTTTGTATGTCGTCATGAAGGAAGAT
CTGGGTCTTCGAGGGGCACACAATCTAGCATCACAAAACGCTGCCAAACT
TGTTTCCGGAGAAGAAAGCTTGAAGGGAGACGTCGTAGCGGAGGTTGTTC
CGAAGATGGTATCGCGTGAGTCAAGCCTCTCCATGTCTCAGGCCATTCGC
GAAGCGATTTCTTCTTATCCATTGACGTACGCAGTGGTGACGAGTATGAC
AGCGGCGGTAACTGCGGCGGCGTGCGTTGGTGTATTTCAGACTTTGCGAA
AGATGAAACGCCTCTGA

Coding sequence (CDS) from alignment at tig00000074_pilon:454821..456137-

>Ggra6495.t1 ID=Ggra6495.t1|Name=Ggra6495.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1317bp|location=Sequence derived from alignment at tig00000074_pilon:454821..456137- (Gracilaria gracilis GNS1m male)
ATGAGACTTCTAGTTGGTGATATCGGAGGCACCAACGCCCGCTTGCTGCT
TTATGAGGCCCCAGACAATTATAATGAGCTATCTGACTATAAGAAAGTAA
CCTCTCAGAGCGTCATTTCTCAGAAGTATTACAAGAACAATGACTTCGAG
TCGTTCACCCAAGTTCTTTGGACCTTTTTTTCACTTCCGGCAAATGCAAA
TCTGAAGGTCCACAGTTGCTGCCTGGCAGTTGCGGGACCTGTCGCGAATA
ATCATATCAATTTCACCAACCGTGAAGGGTGGATCATCGATGGGTATGCT
ATCGAGGAAGAATTCGGCATTGACTCAGTTATCCTCATCAATGACTTTGT
AGCGAACGGTTATGGCTTACTTTCTTTGACAGAGGAAGAACTAGTCACTC
TCAAGCAAGGAAATCCGTCCGCACCGGACATTTTTTCGGCGCCTGTAGCA
CTCGTTGGCGCTGGCACTGGATTAGGTGAGTGCTTTTTGACTCCAAACAA
GGATGGAACTGTAACAGCATATCCTACTGAAGGTGGTCATGTCGAGTTCG
CTCCACGTTCAAAGCTTGAGCAGGAGCTGTTATCCTTTCTTGAAAAACGT
TTGGATACAAAACAACCAAAGGGCAACGATGATTACTCAGATGCGGACCT
ACTCCCTCGCGTTAGCGTCGAGCGACTCGTATCTGGGAAGGGACTTGAGA
ACATCTACGAATTCCTGCGGGAGAAGTACCCAGATCAGGTAAACGAGGCA
TTTGATCAAATGTATCAGAGTTCGACAGAGAAAGGCCGTTTGATCGGTTC
TGAGAAGTACAACTACCACCTTTTCATGCGAGCGCTTCAAATTATGTTCG
CTATCTACGGTGGGGAAGTCGGGAACGTGGCGCTTAAGTATCTGCCATAT
GGCGGTATATATGTAGCTGGTGGTATTGCACCGAAGAACATTGAGTTCAT
CAAAAGTCATGACTCGGACTTTGTCTTGCGATTTGAAGATAAGGGGAGAA
TGAGTAGCCTGATGCCGGAGTTTCCTTTGTATGTCGTCATGAAGGAAGAT
CTGGGTCTTCGAGGGGCACACAATCTAGCATCACAAAACGCTGCCAAACT
TGTTTCCGGAGAAGAAAGCTTGAAGGGAGACGTCGTAGCGGAGGTTGTTC
CGAAGATGGTATCGCGTGAGTCAAGCCTCTCCATGTCTCAGGCCATTCGC
GAAGCGATTTCTTCTTATCCATTGACGTACGCAGTGGTGACGAGTATGAC
AGCGGCGGTAACTGCGGCGGCGTGCGTTGGTGTATTTCAGACTTTGCGAA
AGATGAAACGCCTCTGA