Ggra6489.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6489.t1
Unique NameGgra6489.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:384966..385982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6489Ggra6489Gracilaria gracilis GNS1m malegenetig00000074_pilon 384966..385982 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6489.t1.start1Ggra6489.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 384966..384968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6489.t1.CDS1Ggra6489.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 384966..385982 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6489.t1.exon1Ggra6489.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 384966..385982 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6489.t1.stop1Ggra6489.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 385980..385982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6489.t1Ggra6489.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 384966..385982 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6489.t1 ID=Ggra6489.t1|Name=Ggra6489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MATIALRPSLFSLLVTLVSVLTELALLSALLRFNTLLQCRRLSRGATLSI
ARHRRCTTQLALLTMLLFVLIELLASANTITVFSVQTIRQPCTQFSPLFP
QRSGASGAEVALYSCLRVNGLQFSVFAGNHSSVTDAVRCAQSFAFRYQNL
QRVSQPLADDGVMRCTPSAFCAIARARGRTLFTSEAFELPSDDVDQSQLL
RFLPTQLSFAPAPHLPMFAMRTAQAFEQGITDELDLRRRVIMGWSSGSCL
FTSDGEEQTQIPAPMLGATIAVWVLSVLLFILSLSLRAKVHFDMNNQMHW
ANRVRRQVDDETEATLLKLAAASDGSAATVYLINKHAA*
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spliced messenger RNA

>Ggra6489.t1 ID=Ggra6489.t1|Name=Ggra6489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000074_pilon:384966..385982+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCATCGCGCTGCGCCCATCGCTCTTCTCCCTACTCGTCACGCT
CGTCTCCGTTCTCACCGAACTCGCCCTGCTCTCCGCCCTGCTCCGTTTCA
ACACCCTTCTGCAATGCCGCCGTCTTTCGCGCGGCGCCACGCTCAGCATC
GCGCGCCACCGCCGCTGCACCACCCAGCTGGCGCTGCTCACCATGCTTCT
CTTCGTGCTCATCGAGCTGCTCGCCTCCGCCAACACCATCACCGTCTTTT
CTGTCCAAACCATCCGCCAGCCCTGCACCCAATTCTCCCCGCTGTTCCCG
CAGCGCTCCGGCGCGTCTGGCGCCGAGGTGGCGCTGTACTCGTGTCTGCG
CGTCAACGGCTTGCAATTCTCCGTGTTTGCCGGCAACCACAGCTCCGTCA
CCGACGCCGTGCGCTGCGCGCAGTCGTTCGCATTTCGCTATCAAAACCTG
CAACGCGTGTCACAGCCGCTGGCGGATGACGGCGTCATGCGTTGCACGCC
CTCTGCCTTTTGCGCCATTGCGCGCGCGCGCGGCCGCACCTTGTTCACGT
CGGAGGCGTTTGAGCTACCGTCGGACGACGTGGATCAGTCGCAGTTGCTG
CGCTTTCTGCCCACGCAGCTGAGCTTTGCGCCCGCGCCGCATTTGCCCAT
GTTTGCAATGCGCACAGCGCAGGCTTTTGAGCAGGGAATCACGGACGAGT
TGGACTTGAGACGACGCGTCATTATGGGCTGGAGTTCAGGCAGCTGTTTG
TTTACTTCCGACGGCGAGGAACAGACGCAGATCCCGGCGCCAATGCTGGG
CGCTACCATAGCTGTGTGGGTGCTGTCCGTGCTGCTGTTTATTCTCAGTT
TGTCGTTGAGAGCCAAGGTGCACTTTGACATGAACAACCAGATGCACTGG
GCAAATCGCGTGCGCAGGCAGGTGGATGATGAGACGGAGGCTACATTGCT
GAAATTAGCGGCCGCATCTGATGGAAGCGCCGCAACCGTTTACTTGATCA
ACAAACATGCGGCGTGA
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protein sequence of Ggra6489.t1

>Ggra6489.t1 ID=Ggra6489.t1|Name=Ggra6489.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MATIALRPSLFSLLVTLVSVLTELALLSALLRFNTLLQCRRLSRGATLSI
ARHRRCTTQLALLTMLLFVLIELLASANTITVFSVQTIRQPCTQFSPLFP
QRSGASGAEVALYSCLRVNGLQFSVFAGNHSSVTDAVRCAQSFAFRYQNL
QRVSQPLADDGVMRCTPSAFCAIARARGRTLFTSEAFELPSDDVDQSQLL
RFLPTQLSFAPAPHLPMFAMRTAQAFEQGITDELDLRRRVIMGWSSGSCL
FTSDGEEQTQIPAPMLGATIAVWVLSVLLFILSLSLRAKVHFDMNNQMHW
ANRVRRQVDDETEATLLKLAAASDGSAATVYLINKHAA*
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mRNA from alignment at tig00000074_pilon:384966..385982+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6489.t1 ID=Ggra6489.t1|Name=Ggra6489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000074_pilon:384966..385982+ (Gracilaria gracilis GNS1m male)
ATGGCCACCATCGCGCTGCGCCCATCGCTCTTCTCCCTACTCGTCACGCT
CGTCTCCGTTCTCACCGAACTCGCCCTGCTCTCCGCCCTGCTCCGTTTCA
ACACCCTTCTGCAATGCCGCCGTCTTTCGCGCGGCGCCACGCTCAGCATC
GCGCGCCACCGCCGCTGCACCACCCAGCTGGCGCTGCTCACCATGCTTCT
CTTCGTGCTCATCGAGCTGCTCGCCTCCGCCAACACCATCACCGTCTTTT
CTGTCCAAACCATCCGCCAGCCCTGCACCCAATTCTCCCCGCTGTTCCCG
CAGCGCTCCGGCGCGTCTGGCGCCGAGGTGGCGCTGTACTCGTGTCTGCG
CGTCAACGGCTTGCAATTCTCCGTGTTTGCCGGCAACCACAGCTCCGTCA
CCGACGCCGTGCGCTGCGCGCAGTCGTTCGCATTTCGCTATCAAAACCTG
CAACGCGTGTCACAGCCGCTGGCGGATGACGGCGTCATGCGTTGCACGCC
CTCTGCCTTTTGCGCCATTGCGCGCGCGCGCGGCCGCACCTTGTTCACGT
CGGAGGCGTTTGAGCTACCGTCGGACGACGTGGATCAGTCGCAGTTGCTG
CGCTTTCTGCCCACGCAGCTGAGCTTTGCGCCCGCGCCGCATTTGCCCAT
GTTTGCAATGCGCACAGCGCAGGCTTTTGAGCAGGGAATCACGGACGAGT
TGGACTTGAGACGACGCGTCATTATGGGCTGGAGTTCAGGCAGCTGTTTG
TTTACTTCCGACGGCGAGGAACAGACGCAGATCCCGGCGCCAATGCTGGG
CGCTACCATAGCTGTGTGGGTGCTGTCCGTGCTGCTGTTTATTCTCAGTT
TGTCGTTGAGAGCCAAGGTGCACTTTGACATGAACAACCAGATGCACTGG
GCAAATCGCGTGCGCAGGCAGGTGGATGATGAGACGGAGGCTACATTGCT
GAAATTAGCGGCCGCATCTGATGGAAGCGCCGCAACCGTTTACTTGATCA
ACAAACATGCGGCGTGA
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Coding sequence (CDS) from alignment at tig00000074_pilon:384966..385982+

>Ggra6489.t1 ID=Ggra6489.t1|Name=Ggra6489.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000074_pilon:384966..385982+ (Gracilaria gracilis GNS1m male)
ATGGCCACCATCGCGCTGCGCCCATCGCTCTTCTCCCTACTCGTCACGCT
CGTCTCCGTTCTCACCGAACTCGCCCTGCTCTCCGCCCTGCTCCGTTTCA
ACACCCTTCTGCAATGCCGCCGTCTTTCGCGCGGCGCCACGCTCAGCATC
GCGCGCCACCGCCGCTGCACCACCCAGCTGGCGCTGCTCACCATGCTTCT
CTTCGTGCTCATCGAGCTGCTCGCCTCCGCCAACACCATCACCGTCTTTT
CTGTCCAAACCATCCGCCAGCCCTGCACCCAATTCTCCCCGCTGTTCCCG
CAGCGCTCCGGCGCGTCTGGCGCCGAGGTGGCGCTGTACTCGTGTCTGCG
CGTCAACGGCTTGCAATTCTCCGTGTTTGCCGGCAACCACAGCTCCGTCA
CCGACGCCGTGCGCTGCGCGCAGTCGTTCGCATTTCGCTATCAAAACCTG
CAACGCGTGTCACAGCCGCTGGCGGATGACGGCGTCATGCGTTGCACGCC
CTCTGCCTTTTGCGCCATTGCGCGCGCGCGCGGCCGCACCTTGTTCACGT
CGGAGGCGTTTGAGCTACCGTCGGACGACGTGGATCAGTCGCAGTTGCTG
CGCTTTCTGCCCACGCAGCTGAGCTTTGCGCCCGCGCCGCATTTGCCCAT
GTTTGCAATGCGCACAGCGCAGGCTTTTGAGCAGGGAATCACGGACGAGT
TGGACTTGAGACGACGCGTCATTATGGGCTGGAGTTCAGGCAGCTGTTTG
TTTACTTCCGACGGCGAGGAACAGACGCAGATCCCGGCGCCAATGCTGGG
CGCTACCATAGCTGTGTGGGTGCTGTCCGTGCTGCTGTTTATTCTCAGTT
TGTCGTTGAGAGCCAAGGTGCACTTTGACATGAACAACCAGATGCACTGG
GCAAATCGCGTGCGCAGGCAGGTGGATGATGAGACGGAGGCTACATTGCT
GAAATTAGCGGCCGCATCTGATGGAAGCGCCGCAACCGTTTACTTGATCA
ACAAACATGCGGCGTGA
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