Ggra6473.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6473.t1
Unique NameGgra6473.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:223807..224222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog653948.CCA17227
PFAMsNADH-u_ox-rdase
Max annot lvl2759|Eukaryota
Evalue1.07e-15
EggNOG OGs2BS7Y@1|root,2S3JI@2759|Eukaryota
DescriptionNADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6473Ggra6473Gracilaria gracilis GNS1m malegenetig00000074_pilon 223807..224222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6473.t1Ggra6473.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 223807..224222 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6473.t1.stop1Ggra6473.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 223807..223809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6473.t1.CDS1Ggra6473.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 223807..223979 -
Ggra6473.t1.CDS2Ggra6473.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 224078..224222 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6473.t1.exon1Ggra6473.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 223807..223979 -
Ggra6473.t1.exon2Ggra6473.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 224078..224222 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6473.t1.intron1Ggra6473.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 223980..224077 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6473.t1.start1Ggra6473.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 224220..224222 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6473.t1 ID=Ggra6473.t1|Name=Ggra6473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=106bp
MAHPINDPTFPVVDGDPSFGKVMSSLRARDWQNAALVTFVSIPFGYAAGR
PLVMRPSMYMAGMLGATFGLFLGFQNSFARLTGYKDNAVEIAKYGPQTAM
SESST*
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spliced messenger RNA

>Ggra6473.t1 ID=Ggra6473.t1|Name=Ggra6473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=318bp|location=Sequence derived from alignment at tig00000074_pilon:223807..224222- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCATCCAATCAACGATCCGACGTTCCCAGTCGTCGATGGTGATCC
CTCCTTCGGGAAGGTAATGTCATCCCTTCGAGCCCGTGATTGGCAGAATG
CTGCTCTAGTAACCTTTGTGTCCATCCCGTTTGGATATGCAGCAGGACGT
CCACTCGTCATGCGCCCTTCAATGTACATGGCAGGCATGCTTGGGGCTAC
TTTTGGGTTGTTCTTGGGTTTTCAAAACTCTTTTGCGAGACTCACTGGAT
ACAAAGACAACGCAGTAGAAATTGCGAAGTATGGACCTCAAACCGCCATG
TCCGAGTCTTCAACATAG
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protein sequence of Ggra6473.t1

>Ggra6473.t1 ID=Ggra6473.t1|Name=Ggra6473.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=106bp
MAHPINDPTFPVVDGDPSFGKVMSSLRARDWQNAALVTFVSIPFGYAAGR
PLVMRPSMYMAGMLGATFGLFLGFQNSFARLTGYKDNAVEIAKYGPQTAM
SESST*
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mRNA from alignment at tig00000074_pilon:223807..224222-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6473.t1 ID=Ggra6473.t1|Name=Ggra6473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=416bp|location=Sequence derived from alignment at tig00000074_pilon:223807..224222- (Gracilaria gracilis GNS1m male)
ATGGCCCATCCAATCAACGATCCGACGTTCCCAGTCGTCGATGGTGATCC
CTCCTTCGGGAAGGTAATGTCATCCCTTCGAGCCCGTGATTGGCAGAATG
CTGCTCTAGTAACCTTTGTGTCCATCCCGTTTGGATATGCAGCAGGTTCG
TTACGGCATTCAATCTGAACCCCTGTAATAACACAAGTGTGGGTGTAACT
GACTCATTGTAAAATGTATACGCATCGGGATTTTGTACTTTAGGACGTCC
ACTCGTCATGCGCCCTTCAATGTACATGGCAGGCATGCTTGGGGCTACTT
TTGGGTTGTTCTTGGGTTTTCAAAACTCTTTTGCGAGACTCACTGGATAC
AAAGACAACGCAGTAGAAATTGCGAAGTATGGACCTCAAACCGCCATGTC
CGAGTCTTCAACATAG
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Coding sequence (CDS) from alignment at tig00000074_pilon:223807..224222-

>Ggra6473.t1 ID=Ggra6473.t1|Name=Ggra6473.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=318bp|location=Sequence derived from alignment at tig00000074_pilon:223807..224222- (Gracilaria gracilis GNS1m male)
ATGGCCCATCCAATCAACGATCCGACGTTCCCAGTCGTCGATGGTGATCC
CTCCTTCGGGAAGGTAATGTCATCCCTTCGAGCCCGTGATTGGCAGAATG
CTGCTCTAGTAACCTTTGTGTCCATCCCGTTTGGATATGCAGCAGGACGT
CCACTCGTCATGCGCCCTTCAATGTACATGGCAGGCATGCTTGGGGCTAC
TTTTGGGTTGTTCTTGGGTTTTCAAAACTCTTTTGCGAGACTCACTGGAT
ACAAAGACAACGCAGTAGAAATTGCGAAGTATGGACCTCAAACCGCCATG
TCCGAGTCTTCAACATAG
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