Ggra6459.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6459.t1
Unique NameGgra6459.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:178188..178697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7070.TC008912-PA
Preferred nameAP3S1
PFAMsClat_adaptor_s
Max annot lvl33208|Metazoa
KEGG koko:K12399
KEGG Pathwayko04142,map04142
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006725,GO:0006726,GO:0006727,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008055,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008286,GO:0008565,GO:0009058,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010970,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0018130,GO:0019438,GO:0019748,GO:0023052,GO:0030117,GO:0030119,GO:0030123,GO:0030133,GO:0030659,GO:0030705,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033060,GO:0034613,GO:0042221,GO:0042440,GO:0042441,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043434,GO:0043473,GO:0043474,GO:0044237,GO:0044249,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045184,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046907,GO:0047496,GO:0048066,GO:0048069,GO:0048072,GO:0048475,GO:0048489,GO:0048490,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0080171,GO:0097479,GO:0097480,GO:0097708,GO:0098791,GO:0098796,GO:0098930,GO:0099003,GO:0099111,GO:0099514,GO:0099517,GO:0099518,GO:1901360,GO:1901362,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701
Evalue4.98e-70
EggNOG OGsCOG5030@1|root,KOG0936@2759|Eukaryota,38T6J@33154|Opisthokonta,3BA4R@33208|Metazoa,3CW6F@33213|Bilateria,41TCJ@6656|Arthropoda,3SJ2I@50557|Insecta
DescriptionProtein transporter activity. It is involved in the biological process described with vesicle-mediated transport
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6459Ggra6459Gracilaria gracilis GNS1m malegenetig00000074_pilon 178188..178697 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6459.t1.stop1Ggra6459.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 178188..178190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6459.t1.CDS1Ggra6459.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 178188..178697 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6459.t1.exon1Ggra6459.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 178188..178697 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6459.t1.start1Ggra6459.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 178695..178697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6459.t1Ggra6459.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 178188..178697 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6459.t1 ID=Ggra6459.t1|Name=Ggra6459.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=170bp
MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFV
EGGTMFGPGVRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCF
ENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAESQA
SKPSLVSTGRSFSLSRVYR*
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spliced messenger RNA

>Ggra6459.t1 ID=Ggra6459.t1|Name=Ggra6459.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00000074_pilon:178188..178697- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTAAGTCCGTAATAGTTCTTAACAATCATGGCCAACCGCGTTTAAC
AAAGTTTTACGACTATCTGCCTGAGGACCGCCAACAACAGCTCATTCGTG
ATGTTTTCGCTATCGTTTCAAAACGCAGCGACGGTCTCTGCAACTTTGTG
GAGGGTGGTACGATGTTCGGACCTGGCGTTCGCGTTATATACCGTCACTA
TGCCACTCTGTTTTTCGTTTTCTGCGTCGACGAGGCCGAGAGTGAATTGG
GTATTCTGGACCTGATTCAAGTCTTCGTCGAGACCCTGGATCGCTGCTTT
GAGAACGTATGTGAGCTGGACCTCATTTTCTACATGAACAAGATTCATTA
CGTTCTGGATGAGATTGTTGTTGGTGGCTTAGTGCTGGAGACTAATATGG
CAGATATTCTAGCTGCTCTGCAGGAAGCGAAGCGAGCAGAGTCTCAAGCC
TCTAAACCGTCTTTGGTCTCCACCGGCAGATCATTCAGTCTTTCACGAGT
TTACAGATAA
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protein sequence of Ggra6459.t1

>Ggra6459.t1 ID=Ggra6459.t1|Name=Ggra6459.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=170bp
MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFV
EGGTMFGPGVRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCF
ENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAESQA
SKPSLVSTGRSFSLSRVYR*
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mRNA from alignment at tig00000074_pilon:178188..178697-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6459.t1 ID=Ggra6459.t1|Name=Ggra6459.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00000074_pilon:178188..178697- (Gracilaria gracilis GNS1m male)
ATGATTAAGTCCGTAATAGTTCTTAACAATCATGGCCAACCGCGTTTAAC
AAAGTTTTACGACTATCTGCCTGAGGACCGCCAACAACAGCTCATTCGTG
ATGTTTTCGCTATCGTTTCAAAACGCAGCGACGGTCTCTGCAACTTTGTG
GAGGGTGGTACGATGTTCGGACCTGGCGTTCGCGTTATATACCGTCACTA
TGCCACTCTGTTTTTCGTTTTCTGCGTCGACGAGGCCGAGAGTGAATTGG
GTATTCTGGACCTGATTCAAGTCTTCGTCGAGACCCTGGATCGCTGCTTT
GAGAACGTATGTGAGCTGGACCTCATTTTCTACATGAACAAGATTCATTA
CGTTCTGGATGAGATTGTTGTTGGTGGCTTAGTGCTGGAGACTAATATGG
CAGATATTCTAGCTGCTCTGCAGGAAGCGAAGCGAGCAGAGTCTCAAGCC
TCTAAACCGTCTTTGGTCTCCACCGGCAGATCATTCAGTCTTTCACGAGT
TTACAGATAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:178188..178697-

>Ggra6459.t1 ID=Ggra6459.t1|Name=Ggra6459.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=510bp|location=Sequence derived from alignment at tig00000074_pilon:178188..178697- (Gracilaria gracilis GNS1m male)
ATGATTAAGTCCGTAATAGTTCTTAACAATCATGGCCAACCGCGTTTAAC
AAAGTTTTACGACTATCTGCCTGAGGACCGCCAACAACAGCTCATTCGTG
ATGTTTTCGCTATCGTTTCAAAACGCAGCGACGGTCTCTGCAACTTTGTG
GAGGGTGGTACGATGTTCGGACCTGGCGTTCGCGTTATATACCGTCACTA
TGCCACTCTGTTTTTCGTTTTCTGCGTCGACGAGGCCGAGAGTGAATTGG
GTATTCTGGACCTGATTCAAGTCTTCGTCGAGACCCTGGATCGCTGCTTT
GAGAACGTATGTGAGCTGGACCTCATTTTCTACATGAACAAGATTCATTA
CGTTCTGGATGAGATTGTTGTTGGTGGCTTAGTGCTGGAGACTAATATGG
CAGATATTCTAGCTGCTCTGCAGGAAGCGAAGCGAGCAGAGTCTCAAGCC
TCTAAACCGTCTTTGGTCTCCACCGGCAGATCATTCAGTCTTTCACGAGT
TTACAGATAA
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