Ggra6448.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6448.t1
Unique NameGgra6448.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:85182..86306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog746128.CADAFUBP00008646
Preferred nameSWR1
PFAMsHSA,Helicase_C,SNF2_N
Max annot lvl4751|Fungi
KEGG koko:K11681
GOsGO:0000166,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005198,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006996,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034728,GO:0035639,GO:0036094,GO:0042623,GO:0043044,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070603,GO:0071103,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0097346,GO:0097367,GO:0140097,GO:1900239,GO:1900545,GO:1901265,GO:1901363,GO:1902494,GO:1903506,GO:1904949,GO:2000112,GO:2001141
Evalue2.06e-39
EggNOG OGsCOG0553@1|root,KOG0391@2759|Eukaryota,38C85@33154|Opisthokonta,3NVPE@4751|Fungi,3QQNZ@4890|Ascomycota,20F6K@147545|Eurotiomycetes,3S453@5042|Eurotiales
EC3.6.4.12
DescriptionSNF2 family helicase ATPase (Swr1)
COG categoryL
BRITEko00000,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6448Ggra6448Gracilaria gracilis GNS1m malegenetig00000074_pilon 85182..86306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6448.t1Ggra6448.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 85182..86306 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6448.t1.stop1Ggra6448.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 85182..85184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6448.t1.CDS1Ggra6448.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 85182..85618 -
Ggra6448.t1.CDS2Ggra6448.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 86129..86306 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6448.t1.exon1Ggra6448.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 85182..85618 -
Ggra6448.t1.exon2Ggra6448.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 86129..86306 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6448.t1.intron1Ggra6448.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 85619..86128 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6448.t1.start1Ggra6448.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 86304..86306 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6448.t1 ID=Ggra6448.t1|Name=Ggra6448.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
MAMAEAEEEKDQNDILALQTQADLPLKDLLRCQGIDPENYLSPMKPSRPP
ESNDSDFDINTNGTAEELAGTEAPAKKTPDPNVNAKPFAIESQATPYNRL
PNELLRGNLRDYHRRGLDWLQILWRRDLNRILAVEMGLGKNIQTIALLAW
LEVEKRMWDPHLIVVPTSVMVNWEVQFKKWLPGFKVLIYFGSVKEGKEKR
RGWT*
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spliced messenger RNA

>Ggra6448.t1 ID=Ggra6448.t1|Name=Ggra6448.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000074_pilon:85182..86306- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATGGCAGAAGCCGAAGAAGAGAAAGATCAGAACGATATTTTAGC
CCTTCAAACGCAAGCTGATTTACCTCTGAAGGACTTGTTGAGGTGTCAAG
GTATCGATCCCGAAAACTATTTGTCTCCAATGAAGCCTTCAAGACCGCCT
GAATCAAATGACAGTGATTTTGATATCAATACAAATGGCACAGCGGAGGA
GTTAGCTGGAACTGAAGCCCCTGCCAAAAAGACCCCTGATCCGAACGTGA
ATGCAAAGCCTTTCGCCATTGAGTCGCAAGCAACCCCATATAATCGTCTC
CCGAACGAGCTGCTTCGAGGTAATTTACGAGACTACCATAGGAGAGGTTT
AGATTGGCTTCAAATATTATGGCGTAGGGACCTCAACAGGATTCTGGCTG
TTGAGATGGGACTTGGCAAAAACATTCAAACGATTGCGCTCTTGGCATGG
CTTGAAGTAGAAAAGAGGATGTGGGATCCCCATCTAATCGTCGTTCCAAC
TTCAGTTATGGTTAATTGGGAGGTTCAGTTTAAGAAATGGCTTCCAGGAT
TTAAGGTTCTAATCTACTTCGGCAGCGTGAAAGAAGGAAAGGAGAAGAGA
AGAGGGTGGACCTGA
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protein sequence of Ggra6448.t1

>Ggra6448.t1 ID=Ggra6448.t1|Name=Ggra6448.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MAMAEAEEEKDQNDILALQTQADLPLKDLLRCQGIDPENYLSPMKPSRPP
ESNDSDFDINTNGTAEELAGTEAPAKKTPDPNVNAKPFAIESQATPYNRL
PNELLRGNLRDYHRRGLDWLQILWRRDLNRILAVEMGLGKNIQTIALLAW
LEVEKRMWDPHLIVVPTSVMVNWEVQFKKWLPGFKVLIYFGSVKEGKEKR
RGWT*
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mRNA from alignment at tig00000074_pilon:85182..86306-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6448.t1 ID=Ggra6448.t1|Name=Ggra6448.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000074_pilon:85182..86306- (Gracilaria gracilis GNS1m male)
ATGGCAATGGCAGAAGCCGAAGAAGAGAAAGATCAGAACGATATTTTAGC
CCTTCAAACGCAAGCTGATTTACCTCTGAAGGACTTGTTGAGGTGTCAAG
GTATCGATCCCGAAAACTATTTGTCTCCAATGAAGCCTTCAAGACCGCCT
GAATCAAATGACAGTGATTTTGATATCAGTGAGTCGCTATCATGAGGGTG
ACAGTGTCGATGATGAAGAGACGATTCGAGTTGCAGAAACAGAAGACGCT
CCTGCCGTATTTGAAGGTCAAGAACTTGCAGAATAAGCTGCCACCGGAAC
AAAAGAGATTTCGAGAGCCGAGAGTATTGATCCTGATGTGTACAGGGTTG
ATCAAACCAATAACTCAAACCTCATAATGAATCCGATGCTTTGATACCAT
CAGAGGTTTGGTCTAAGCGTGTCCACTCCAAGAGTAGTTTGGTTCATCTT
TCACACAAGAAGGATGAACCCCGGGAGAGCATTGAGAAGGGGTCAACTAG
TGATCGGCAGATTTTGGCATTGACTCCTGCATTGCCGCAGAAAAATATGA
AAGTTGAAGGAAAGAAGAACGTTGTAGCAACGGAGAATTATGGTTCCATG
AATGTAGATGCGCAGAAAACTCAATGCGAAAGAATTTGCTCCCAATAAGA
CTGTCGCTCGAAGACCGCCTCAAATTCTTTGTTTACAGATACAAATGGCA
CAGCGGAGGAGTTAGCTGGAACTGAAGCCCCTGCCAAAAAGACCCCTGAT
CCGAACGTGAATGCAAAGCCTTTCGCCATTGAGTCGCAAGCAACCCCATA
TAATCGTCTCCCGAACGAGCTGCTTCGAGGTAATTTACGAGACTACCATA
GGAGAGGTTTAGATTGGCTTCAAATATTATGGCGTAGGGACCTCAACAGG
ATTCTGGCTGTTGAGATGGGACTTGGCAAAAACATTCAAACGATTGCGCT
CTTGGCATGGCTTGAAGTAGAAAAGAGGATGTGGGATCCCCATCTAATCG
TCGTTCCAACTTCAGTTATGGTTAATTGGGAGGTTCAGTTTAAGAAATGG
CTTCCAGGATTTAAGGTTCTAATCTACTTCGGCAGCGTGAAAGAAGGAAA
GGAGAAGAGAAGAGGGTGGACCTGA
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Coding sequence (CDS) from alignment at tig00000074_pilon:85182..86306-

>Ggra6448.t1 ID=Ggra6448.t1|Name=Ggra6448.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000074_pilon:85182..86306- (Gracilaria gracilis GNS1m male)
ATGGCAATGGCAGAAGCCGAAGAAGAGAAAGATCAGAACGATATTTTAGC
CCTTCAAACGCAAGCTGATTTACCTCTGAAGGACTTGTTGAGGTGTCAAG
GTATCGATCCCGAAAACTATTTGTCTCCAATGAAGCCTTCAAGACCGCCT
GAATCAAATGACAGTGATTTTGATATCAATACAAATGGCACAGCGGAGGA
GTTAGCTGGAACTGAAGCCCCTGCCAAAAAGACCCCTGATCCGAACGTGA
ATGCAAAGCCTTTCGCCATTGAGTCGCAAGCAACCCCATATAATCGTCTC
CCGAACGAGCTGCTTCGAGGTAATTTACGAGACTACCATAGGAGAGGTTT
AGATTGGCTTCAAATATTATGGCGTAGGGACCTCAACAGGATTCTGGCTG
TTGAGATGGGACTTGGCAAAAACATTCAAACGATTGCGCTCTTGGCATGG
CTTGAAGTAGAAAAGAGGATGTGGGATCCCCATCTAATCGTCGTTCCAAC
TTCAGTTATGGTTAATTGGGAGGTTCAGTTTAAGAAATGGCTTCCAGGAT
TTAAGGTTCTAATCTACTTCGGCAGCGTGAAAGAAGGAAAGGAGAAGAGA
AGAGGGTGGACCTGA
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