Ggra6438.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6438.t1
Unique NameGgra6438.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length118
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:9094..9447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705410.1
Preferred nameKIFC3
PFAMsKinesin
Max annot lvl2759|Eukaryota
KEGG koko:K10406
GOsGO:0003008,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005871,GO:0005875,GO:0005911,GO:0005912,GO:0005913,GO:0005915,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007030,GO:0007155,GO:0007600,GO:0007601,GO:0008150,GO:0008569,GO:0009987,GO:0010256,GO:0012505,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022610,GO:0030054,GO:0032501,GO:0032991,GO:0034330,GO:0034331,GO:0034332,GO:0034334,GO:0042623,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043296,GO:0043954,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045216,GO:0045217,GO:0045218,GO:0050877,GO:0050953,GO:0070161,GO:0071840,GO:0090136,GO:0098609,GO:1990939
Evalue7.07e-09
EggNOG OGsCOG5059@1|root,KOG0239@2759|Eukaryota
Descriptionmicrotubule motor activity
COG categoryZ
BRITEko00000,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6438Ggra6438Gracilaria gracilis GNS1m malegenetig00000074_pilon 9094..9447 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6438.t1.start1Ggra6438.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 9094..9096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6438.t1.CDS1Ggra6438.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 9094..9447 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6438.t1.exon1Ggra6438.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 9094..9447 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6438.t1.stop1Ggra6438.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 9445..9447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6438.t1Ggra6438.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 9094..9447 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6438.t1 ID=Ggra6438.t1|Name=Ggra6438.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=118bp
MHPSLLSRQPDADCNADESGTRRVCFQLDKFTQTFSHVYVLGDAHALGEW
DPNRALSMNMQTAANSICRGEWRLDLPIDDDDNPIRYTYMIISSSESHEQ
RQVVAPDRVRTLDFTST*
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spliced messenger RNA

>Ggra6438.t1 ID=Ggra6438.t1|Name=Ggra6438.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00000074_pilon:9094..9447+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCCCTCGCTGCTGTCGCGGCAGCCCGACGCCGACTGCAACGCCGA
CGAATCGGGAACTCGTCGCGTCTGTTTTCAATTGGACAAGTTCACGCAGA
CCTTTTCGCACGTGTATGTTCTTGGAGACGCGCATGCCCTCGGCGAATGG
GACCCAAACAGAGCTTTGAGTATGAACATGCAAACTGCTGCTAATTCCAT
TTGTCGTGGCGAATGGCGTCTTGACCTGCCAATTGATGACGATGACAATC
CAATTCGCTACACCTACATGATCATCAGTTCTTCCGAGTCGCACGAACAG
CGCCAAGTGGTCGCTCCAGACCGTGTGCGAACCTTGGACTTCACCTCAAC
CTGA
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protein sequence of Ggra6438.t1

>Ggra6438.t1 ID=Ggra6438.t1|Name=Ggra6438.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=118bp
MHPSLLSRQPDADCNADESGTRRVCFQLDKFTQTFSHVYVLGDAHALGEW
DPNRALSMNMQTAANSICRGEWRLDLPIDDDDNPIRYTYMIISSSESHEQ
RQVVAPDRVRTLDFTST*
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mRNA from alignment at tig00000074_pilon:9094..9447+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6438.t1 ID=Ggra6438.t1|Name=Ggra6438.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00000074_pilon:9094..9447+ (Gracilaria gracilis GNS1m male)
ATGCACCCCTCGCTGCTGTCGCGGCAGCCCGACGCCGACTGCAACGCCGA
CGAATCGGGAACTCGTCGCGTCTGTTTTCAATTGGACAAGTTCACGCAGA
CCTTTTCGCACGTGTATGTTCTTGGAGACGCGCATGCCCTCGGCGAATGG
GACCCAAACAGAGCTTTGAGTATGAACATGCAAACTGCTGCTAATTCCAT
TTGTCGTGGCGAATGGCGTCTTGACCTGCCAATTGATGACGATGACAATC
CAATTCGCTACACCTACATGATCATCAGTTCTTCCGAGTCGCACGAACAG
CGCCAAGTGGTCGCTCCAGACCGTGTGCGAACCTTGGACTTCACCTCAAC
CTGA
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Coding sequence (CDS) from alignment at tig00000074_pilon:9094..9447+

>Ggra6438.t1 ID=Ggra6438.t1|Name=Ggra6438.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=354bp|location=Sequence derived from alignment at tig00000074_pilon:9094..9447+ (Gracilaria gracilis GNS1m male)
ATGCACCCCTCGCTGCTGTCGCGGCAGCCCGACGCCGACTGCAACGCCGA
CGAATCGGGAACTCGTCGCGTCTGTTTTCAATTGGACAAGTTCACGCAGA
CCTTTTCGCACGTGTATGTTCTTGGAGACGCGCATGCCCTCGGCGAATGG
GACCCAAACAGAGCTTTGAGTATGAACATGCAAACTGCTGCTAATTCCAT
TTGTCGTGGCGAATGGCGTCTTGACCTGCCAATTGATGACGATGACAATC
CAATTCGCTACACCTACATGATCATCAGTTCTTCCGAGTCGCACGAACAG
CGCCAAGTGGTCGCTCCAGACCGTGTGCGAACCTTGGACTTCACCTCAAC
CTGA
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