Ggra6432.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6432.t1
Unique NameGgra6432.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:216532..217711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog197221.22295307
Max annot lvl1117|Cyanobacteria
Evalue2.05e-07
EggNOG OGs28NP8@1|root,2ZBP7@2|Bacteria,1G577@1117|Cyanobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6432Ggra6432Gracilaria gracilis GNS1m malegenetig00000918_pilon 216532..217711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6432.t1Ggra6432.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 216532..217711 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6432.t1.stop1Ggra6432.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 216532..216534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6432.t1.CDS1Ggra6432.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 216532..216945 -
Ggra6432.t1.CDS2Ggra6432.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000918_pilon 217061..217711 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6432.t1.exon1Ggra6432.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 216532..216945 -
Ggra6432.t1.exon2Ggra6432.t1.exon2Gracilaria gracilis GNS1m maleexontig00000918_pilon 217061..217711 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6432.t1.intron1Ggra6432.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000918_pilon 216946..217060 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6432.t1.start1Ggra6432.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 217709..217711 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6432.t1 ID=Ggra6432.t1|Name=Ggra6432.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=355bp
MEAFALAPRVAHFAPLHQQRLHTQQQQQQRLAARCARRRATHTRRAVAPM
RCAASRRADEPPPPPPPQPQPQQWTDSRLSAPGGGGDADDDAALSSGTGF
SLRELHTQRFSQLSSRRDALSRRGAYAIRAHDGDVVYMGYSKNVAAKLLF
HHTRVPQHCVSFQVYAPPLPPHLLTPDVLEGVLEYWVRETGGVPVGNAVD
RALWEPAVEPPPPAQRKPAEEQVPLRERSSPPRSARARASAQPSSSSSSP
PSSSSTFSDAFRATAAPGVDWSASEHDYVHVHVDPFDAFSASGKRAAGSR
SSSAWQHDEHDEGGGANARADWVPILALMGVAGLIWLIGVLGNALPAATP
SMGM*
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spliced messenger RNA

>Ggra6432.t1 ID=Ggra6432.t1|Name=Ggra6432.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000918_pilon:216532..217711- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCGTTCGCGCTCGCGCCGCGCGTGGCGCACTTTGCGCCGCTGCA
CCAGCAGCGCCTGCACACGCAGCAGCAGCAGCAGCAGCGGCTCGCCGCGC
GATGCGCGCGCCGCCGCGCGACGCATACGCGCCGCGCCGTCGCGCCGATG
CGCTGCGCGGCGTCGCGCCGCGCAGACGAACCGCCGCCGCCGCCGCCGCC
GCAACCGCAGCCGCAGCAGTGGACGGACTCGCGCCTGTCCGCGCCGGGCG
GCGGCGGCGACGCCGACGACGACGCCGCGCTGTCAAGCGGCACGGGCTTC
TCGCTACGCGAGCTGCACACGCAGCGCTTCTCGCAGCTTTCGTCGCGACG
CGACGCGCTCTCGCGGCGCGGCGCGTACGCCATCCGCGCGCACGACGGCG
ACGTGGTGTACATGGGCTACAGCAAGAACGTGGCGGCCAAGCTATTGTTT
CACCACACGCGCGTGCCGCAGCACTGCGTGAGCTTCCAGGTGTACGCGCC
GCCGCTGCCGCCGCATCTGCTCACGCCCGACGTGCTGGAGGGCGTGCTGG
AGTACTGGGTGCGAGAGACGGGTGGCGTGCCCGTTGGCAACGCCGTGGAC
CGCGCGCTTTGGGAACCTGCCGTCGAACCGCCGCCGCCGGCGCAGCGAAA
GCCCGCAGAAGAACAAGTGCCGCTGCGAGAGCGCAGCTCGCCGCCGCGCA
GCGCGCGCGCACGCGCATCCGCGCAGCCGTCGTCGTCGTCGTCGTCGCCG
CCGTCATCGTCGTCCACGTTTTCGGACGCGTTCCGCGCCACGGCGGCGCC
GGGCGTGGACTGGAGCGCGTCGGAGCACGACTACGTGCACGTGCATGTGG
ACCCGTTCGACGCCTTCTCGGCGTCCGGCAAGCGCGCGGCGGGCAGTCGC
AGCAGCAGCGCGTGGCAGCACGACGAGCACGACGAAGGCGGCGGCGCAAA
CGCGCGCGCAGACTGGGTGCCCATCCTGGCGCTCATGGGCGTGGCCGGCC
TCATCTGGCTCATCGGCGTGCTGGGCAACGCGCTGCCGGCCGCCACGCCC
TCCATGGGCATGTAG
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protein sequence of Ggra6432.t1

>Ggra6432.t1 ID=Ggra6432.t1|Name=Ggra6432.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=355bp
MEAFALAPRVAHFAPLHQQRLHTQQQQQQRLAARCARRRATHTRRAVAPM
RCAASRRADEPPPPPPPQPQPQQWTDSRLSAPGGGGDADDDAALSSGTGF
SLRELHTQRFSQLSSRRDALSRRGAYAIRAHDGDVVYMGYSKNVAAKLLF
HHTRVPQHCVSFQVYAPPLPPHLLTPDVLEGVLEYWVRETGGVPVGNAVD
RALWEPAVEPPPPAQRKPAEEQVPLRERSSPPRSARARASAQPSSSSSSP
PSSSSTFSDAFRATAAPGVDWSASEHDYVHVHVDPFDAFSASGKRAAGSR
SSSAWQHDEHDEGGGANARADWVPILALMGVAGLIWLIGVLGNALPAATP
SMGM*
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mRNA from alignment at tig00000918_pilon:216532..217711-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6432.t1 ID=Ggra6432.t1|Name=Ggra6432.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1180bp|location=Sequence derived from alignment at tig00000918_pilon:216532..217711- (Gracilaria gracilis GNS1m male)
ATGGAGGCGTTCGCGCTCGCGCCGCGCGTGGCGCACTTTGCGCCGCTGCA
CCAGCAGCGCCTGCACACGCAGCAGCAGCAGCAGCAGCGGCTCGCCGCGC
GATGCGCGCGCCGCCGCGCGACGCATACGCGCCGCGCCGTCGCGCCGATG
CGCTGCGCGGCGTCGCGCCGCGCAGACGAACCGCCGCCGCCGCCGCCGCC
GCAACCGCAGCCGCAGCAGTGGACGGACTCGCGCCTGTCCGCGCCGGGCG
GCGGCGGCGACGCCGACGACGACGCCGCGCTGTCAAGCGGCACGGGCTTC
TCGCTACGCGAGCTGCACACGCAGCGCTTCTCGCAGCTTTCGTCGCGACG
CGACGCGCTCTCGCGGCGCGGCGCGTACGCCATCCGCGCGCACGACGGCG
ACGTGGTGTACATGGGCTACAGCAAGAACGTGGCGGCCAAGCTATTGTTT
CACCACACGCGCGTGCCGCAGCACTGCGTGAGCTTCCAGGTGTACGCGCC
GCCGCTGCCGCCGCATCTGCTCACGCCCGACGTGCTGGAGGGCGTGCTGG
AGTACTGGGTGCGAGAGACGGGTGGCGTGCCCGTTGGCAACGCCGTGGAC
CGCGCGCTTTGGGAACCTGCCGTCGAACCGCCGCCGCCGGCGCAGCGAAA
GGTACTGTTGGCTTCTATCCTGCTGCTGTTTGTGGCCTCGTCGCTACTCA
AGCAGTTTCTTTACTATGCAACGCGCTACTAATGCTAATACTATTGTTGT
CGTCGCGTGTTGGCAGCCCGCAGAAGAACAAGTGCCGCTGCGAGAGCGCA
GCTCGCCGCCGCGCAGCGCGCGCGCACGCGCATCCGCGCAGCCGTCGTCG
TCGTCGTCGTCGCCGCCGTCATCGTCGTCCACGTTTTCGGACGCGTTCCG
CGCCACGGCGGCGCCGGGCGTGGACTGGAGCGCGTCGGAGCACGACTACG
TGCACGTGCATGTGGACCCGTTCGACGCCTTCTCGGCGTCCGGCAAGCGC
GCGGCGGGCAGTCGCAGCAGCAGCGCGTGGCAGCACGACGAGCACGACGA
AGGCGGCGGCGCAAACGCGCGCGCAGACTGGGTGCCCATCCTGGCGCTCA
TGGGCGTGGCCGGCCTCATCTGGCTCATCGGCGTGCTGGGCAACGCGCTG
CCGGCCGCCACGCCCTCCATGGGCATGTAG
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Coding sequence (CDS) from alignment at tig00000918_pilon:216532..217711-

>Ggra6432.t1 ID=Ggra6432.t1|Name=Ggra6432.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00000918_pilon:216532..217711- (Gracilaria gracilis GNS1m male)
ATGGAGGCGTTCGCGCTCGCGCCGCGCGTGGCGCACTTTGCGCCGCTGCA
CCAGCAGCGCCTGCACACGCAGCAGCAGCAGCAGCAGCGGCTCGCCGCGC
GATGCGCGCGCCGCCGCGCGACGCATACGCGCCGCGCCGTCGCGCCGATG
CGCTGCGCGGCGTCGCGCCGCGCAGACGAACCGCCGCCGCCGCCGCCGCC
GCAACCGCAGCCGCAGCAGTGGACGGACTCGCGCCTGTCCGCGCCGGGCG
GCGGCGGCGACGCCGACGACGACGCCGCGCTGTCAAGCGGCACGGGCTTC
TCGCTACGCGAGCTGCACACGCAGCGCTTCTCGCAGCTTTCGTCGCGACG
CGACGCGCTCTCGCGGCGCGGCGCGTACGCCATCCGCGCGCACGACGGCG
ACGTGGTGTACATGGGCTACAGCAAGAACGTGGCGGCCAAGCTATTGTTT
CACCACACGCGCGTGCCGCAGCACTGCGTGAGCTTCCAGGTGTACGCGCC
GCCGCTGCCGCCGCATCTGCTCACGCCCGACGTGCTGGAGGGCGTGCTGG
AGTACTGGGTGCGAGAGACGGGTGGCGTGCCCGTTGGCAACGCCGTGGAC
CGCGCGCTTTGGGAACCTGCCGTCGAACCGCCGCCGCCGGCGCAGCGAAA
GCCCGCAGAAGAACAAGTGCCGCTGCGAGAGCGCAGCTCGCCGCCGCGCA
GCGCGCGCGCACGCGCATCCGCGCAGCCGTCGTCGTCGTCGTCGTCGCCG
CCGTCATCGTCGTCCACGTTTTCGGACGCGTTCCGCGCCACGGCGGCGCC
GGGCGTGGACTGGAGCGCGTCGGAGCACGACTACGTGCACGTGCATGTGG
ACCCGTTCGACGCCTTCTCGGCGTCCGGCAAGCGCGCGGCGGGCAGTCGC
AGCAGCAGCGCGTGGCAGCACGACGAGCACGACGAAGGCGGCGGCGCAAA
CGCGCGCGCAGACTGGGTGCCCATCCTGGCGCTCATGGGCGTGGCCGGCC
TCATCTGGCTCATCGGCGTGCTGGGCAACGCGCTGCCGGCCGCCACGCCC
TCCATGGGCATGTAG
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