Ggra6431.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6431.t1
Unique Name	Ggra6431.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	489

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000918_pilon	contig	tig00000918_pilon:213538..215004 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6431	Ggra6431	Gracilaria gracilis GNS1m male	gene	tig00000918_pilon 213538..215004 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6431.t1.stop1	Ggra6431.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000918_pilon 213538..213540 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6431.t1.CDS1	Ggra6431.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000918_pilon 213538..215004 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6431.t1.exon1	Ggra6431.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000918_pilon 213538..215004 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6431.t1.start1	Ggra6431.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000918_pilon 215002..215004 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6431.t1	Ggra6431.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000918_pilon 213538..215004 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000918_pilon:213538..215004-
coding sequence from alignment at tig00000918_pilon:213538..215004-

mRNA sequence

>Ggra6431.t1 ID=Ggra6431.t1|Name=Ggra6431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp
MPPASYFTPNKSSPILRHFARSVPTPALLCSVALAFFVFGVLFSRNVAAM
FDASSPQHFGLPTRRLATARAVLNLTHVHPDHNLVEPHADSQPLQQQQQQ
QQQQQQQQQQQQQQPPHHEPPPVAAAAAADHHHNPPADCCVGMWRSWPVS
QQYDFSHLYQVAQHLNFSRNTLLNYFHMHKTGGVTTKVEVMVLIRRYENR
VQLTNRGRPLTVIETCYQQNYTNPDEGNRLENTWHCDFGQVEGFTPQKLA
SIDMVMGHQYWEEGCEMYFGPIRDVKHFSIFRHPLARKLSFFYHFFVRNL
QRDENDVGKDEVISFLLGDSMPENDALTRDAGPNYYASRMISDGVTGFVN
HRYVIAKHQQEQAIATVLHKLQHKYAFVGLQLQPEASQCMLQKMIQVFAH
VHGLDKMYGTPKLAESKKRLNVGGYPWTPKKVWAAMTPEQRQRYRDVEKV
DLAIYEHVVQRFKEDLKVFACEHRVHADQWAEDQFDQV*

spliced messenger RNA

>Ggra6431.t1 ID=Ggra6431.t1|Name=Ggra6431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00000918_pilon:213538..215004- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCGCGTCGTACTTTACGCCCAACAAGAGCTCGCCCATCCTGCG
CCACTTTGCGCGCTCCGTGCCTACCCCCGCGCTGCTGTGCTCCGTCGCGC
TCGCCTTCTTTGTGTTTGGCGTGCTCTTCTCACGTAATGTCGCCGCTATG
TTTGACGCTTCTTCGCCGCAGCACTTTGGACTGCCTACACGACGCCTTGC
TACTGCGCGCGCCGTGCTTAATCTCACCCATGTGCACCCCGATCATAACC
TCGTTGAGCCTCACGCCGATAGCCAACCTCTGCAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACCGCCGCA
CCACGAGCCACCGCCCGTCGCTGCCGCTGCCGCAGCCGACCACCACCACA
ACCCGCCCGCGGACTGCTGCGTCGGCATGTGGAGATCGTGGCCCGTGTCC
CAACAGTATGACTTTTCGCACCTGTACCAAGTAGCCCAACACCTTAATTT
CTCCCGTAACACCCTTCTCAACTACTTTCACATGCACAAGACCGGCGGCG
TCACCACCAAGGTCGAGGTCATGGTGCTCATCCGCCGCTACGAGAACAGA
GTGCAGCTCACCAATCGCGGCCGCCCGCTCACCGTCATCGAAACCTGCTA
CCAGCAAAACTATACCAACCCGGACGAGGGTAACCGCCTGGAAAACACCT
GGCACTGCGACTTTGGCCAGGTGGAGGGCTTCACCCCGCAAAAACTCGCT
TCCATCGACATGGTCATGGGCCACCAGTACTGGGAGGAGGGCTGCGAGAT
GTACTTTGGCCCCATTCGTGACGTCAAACACTTTTCCATCTTCCGCCATC
CGCTCGCCAGAAAGCTTAGCTTCTTCTACCACTTCTTCGTGCGCAACCTG
CAGCGCGACGAGAACGACGTCGGCAAGGATGAGGTCATCTCCTTCCTGTT
GGGCGATTCCATGCCGGAGAACGACGCGCTTACGCGCGATGCGGGCCCCA
ACTATTACGCGTCGCGAATGATCTCCGACGGCGTCACCGGCTTTGTCAAC
CACCGCTACGTCATCGCCAAGCACCAGCAGGAGCAGGCCATCGCCACCGT
GCTGCACAAGCTGCAGCACAAGTACGCCTTCGTCGGCTTGCAGCTGCAGC
CCGAGGCGTCACAGTGCATGCTGCAGAAGATGATCCAGGTGTTTGCGCAC
GTGCATGGGCTGGATAAGATGTACGGCACGCCCAAGCTCGCGGAGAGTAA
GAAACGACTCAATGTGGGCGGCTACCCGTGGACGCCCAAGAAGGTGTGGG
CGGCCATGACGCCGGAGCAACGCCAGCGGTACCGCGACGTGGAGAAGGTG
GACCTTGCCATTTACGAGCACGTTGTGCAGCGCTTCAAGGAAGACCTCAA
GGTGTTTGCTTGTGAACATCGAGTGCATGCCGATCAATGGGCCGAGGACC
AGTTTGACCAGGTATAG

protein sequence of Ggra6431.t1

>Ggra6431.t1 ID=Ggra6431.t1|Name=Ggra6431.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=489bp
MPPASYFTPNKSSPILRHFARSVPTPALLCSVALAFFVFGVLFSRNVAAM
FDASSPQHFGLPTRRLATARAVLNLTHVHPDHNLVEPHADSQPLQQQQQQ
QQQQQQQQQQQQQQPPHHEPPPVAAAAAADHHHNPPADCCVGMWRSWPVS
QQYDFSHLYQVAQHLNFSRNTLLNYFHMHKTGGVTTKVEVMVLIRRYENR
VQLTNRGRPLTVIETCYQQNYTNPDEGNRLENTWHCDFGQVEGFTPQKLA
SIDMVMGHQYWEEGCEMYFGPIRDVKHFSIFRHPLARKLSFFYHFFVRNL
QRDENDVGKDEVISFLLGDSMPENDALTRDAGPNYYASRMISDGVTGFVN
HRYVIAKHQQEQAIATVLHKLQHKYAFVGLQLQPEASQCMLQKMIQVFAH
VHGLDKMYGTPKLAESKKRLNVGGYPWTPKKVWAAMTPEQRQRYRDVEKV
DLAIYEHVVQRFKEDLKVFACEHRVHADQWAEDQFDQV*

mRNA from alignment at tig00000918_pilon:213538..215004-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6431.t1 ID=Ggra6431.t1|Name=Ggra6431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00000918_pilon:213538..215004- (Gracilaria gracilis GNS1m male)
ATGCCGCCCGCGTCGTACTTTACGCCCAACAAGAGCTCGCCCATCCTGCG
CCACTTTGCGCGCTCCGTGCCTACCCCCGCGCTGCTGTGCTCCGTCGCGC
TCGCCTTCTTTGTGTTTGGCGTGCTCTTCTCACGTAATGTCGCCGCTATG
TTTGACGCTTCTTCGCCGCAGCACTTTGGACTGCCTACACGACGCCTTGC
TACTGCGCGCGCCGTGCTTAATCTCACCCATGTGCACCCCGATCATAACC
TCGTTGAGCCTCACGCCGATAGCCAACCTCTGCAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACCGCCGCA
CCACGAGCCACCGCCCGTCGCTGCCGCTGCCGCAGCCGACCACCACCACA
ACCCGCCCGCGGACTGCTGCGTCGGCATGTGGAGATCGTGGCCCGTGTCC
CAACAGTATGACTTTTCGCACCTGTACCAAGTAGCCCAACACCTTAATTT
CTCCCGTAACACCCTTCTCAACTACTTTCACATGCACAAGACCGGCGGCG
TCACCACCAAGGTCGAGGTCATGGTGCTCATCCGCCGCTACGAGAACAGA
GTGCAGCTCACCAATCGCGGCCGCCCGCTCACCGTCATCGAAACCTGCTA
CCAGCAAAACTATACCAACCCGGACGAGGGTAACCGCCTGGAAAACACCT
GGCACTGCGACTTTGGCCAGGTGGAGGGCTTCACCCCGCAAAAACTCGCT
TCCATCGACATGGTCATGGGCCACCAGTACTGGGAGGAGGGCTGCGAGAT
GTACTTTGGCCCCATTCGTGACGTCAAACACTTTTCCATCTTCCGCCATC
CGCTCGCCAGAAAGCTTAGCTTCTTCTACCACTTCTTCGTGCGCAACCTG
CAGCGCGACGAGAACGACGTCGGCAAGGATGAGGTCATCTCCTTCCTGTT
GGGCGATTCCATGCCGGAGAACGACGCGCTTACGCGCGATGCGGGCCCCA
ACTATTACGCGTCGCGAATGATCTCCGACGGCGTCACCGGCTTTGTCAAC
CACCGCTACGTCATCGCCAAGCACCAGCAGGAGCAGGCCATCGCCACCGT
GCTGCACAAGCTGCAGCACAAGTACGCCTTCGTCGGCTTGCAGCTGCAGC
CCGAGGCGTCACAGTGCATGCTGCAGAAGATGATCCAGGTGTTTGCGCAC
GTGCATGGGCTGGATAAGATGTACGGCACGCCCAAGCTCGCGGAGAGTAA
GAAACGACTCAATGTGGGCGGCTACCCGTGGACGCCCAAGAAGGTGTGGG
CGGCCATGACGCCGGAGCAACGCCAGCGGTACCGCGACGTGGAGAAGGTG
GACCTTGCCATTTACGAGCACGTTGTGCAGCGCTTCAAGGAAGACCTCAA
GGTGTTTGCTTGTGAACATCGAGTGCATGCCGATCAATGGGCCGAGGACC
AGTTTGACCAGGTATAG

Coding sequence (CDS) from alignment at tig00000918_pilon:213538..215004-

>Ggra6431.t1 ID=Ggra6431.t1|Name=Ggra6431.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1467bp|location=Sequence derived from alignment at tig00000918_pilon:213538..215004- (Gracilaria gracilis GNS1m male)
ATGCCGCCCGCGTCGTACTTTACGCCCAACAAGAGCTCGCCCATCCTGCG
CCACTTTGCGCGCTCCGTGCCTACCCCCGCGCTGCTGTGCTCCGTCGCGC
TCGCCTTCTTTGTGTTTGGCGTGCTCTTCTCACGTAATGTCGCCGCTATG
TTTGACGCTTCTTCGCCGCAGCACTTTGGACTGCCTACACGACGCCTTGC
TACTGCGCGCGCCGTGCTTAATCTCACCCATGTGCACCCCGATCATAACC
TCGTTGAGCCTCACGCCGATAGCCAACCTCTGCAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACCGCCGCA
CCACGAGCCACCGCCCGTCGCTGCCGCTGCCGCAGCCGACCACCACCACA
ACCCGCCCGCGGACTGCTGCGTCGGCATGTGGAGATCGTGGCCCGTGTCC
CAACAGTATGACTTTTCGCACCTGTACCAAGTAGCCCAACACCTTAATTT
CTCCCGTAACACCCTTCTCAACTACTTTCACATGCACAAGACCGGCGGCG
TCACCACCAAGGTCGAGGTCATGGTGCTCATCCGCCGCTACGAGAACAGA
GTGCAGCTCACCAATCGCGGCCGCCCGCTCACCGTCATCGAAACCTGCTA
CCAGCAAAACTATACCAACCCGGACGAGGGTAACCGCCTGGAAAACACCT
GGCACTGCGACTTTGGCCAGGTGGAGGGCTTCACCCCGCAAAAACTCGCT
TCCATCGACATGGTCATGGGCCACCAGTACTGGGAGGAGGGCTGCGAGAT
GTACTTTGGCCCCATTCGTGACGTCAAACACTTTTCCATCTTCCGCCATC
CGCTCGCCAGAAAGCTTAGCTTCTTCTACCACTTCTTCGTGCGCAACCTG
CAGCGCGACGAGAACGACGTCGGCAAGGATGAGGTCATCTCCTTCCTGTT
GGGCGATTCCATGCCGGAGAACGACGCGCTTACGCGCGATGCGGGCCCCA
ACTATTACGCGTCGCGAATGATCTCCGACGGCGTCACCGGCTTTGTCAAC
CACCGCTACGTCATCGCCAAGCACCAGCAGGAGCAGGCCATCGCCACCGT
GCTGCACAAGCTGCAGCACAAGTACGCCTTCGTCGGCTTGCAGCTGCAGC
CCGAGGCGTCACAGTGCATGCTGCAGAAGATGATCCAGGTGTTTGCGCAC
GTGCATGGGCTGGATAAGATGTACGGCACGCCCAAGCTCGCGGAGAGTAA
GAAACGACTCAATGTGGGCGGCTACCCGTGGACGCCCAAGAAGGTGTGGG
CGGCCATGACGCCGGAGCAACGCCAGCGGTACCGCGACGTGGAGAAGGTG
GACCTTGCCATTTACGAGCACGTTGTGCAGCGCTTCAAGGAAGACCTCAA
GGTGTTTGCTTGTGAACATCGAGTGCATGCCGATCAATGGGCCGAGGACC
AGTTTGACCAGGTATAG