Ggra6428.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6428.t1
Unique NameGgra6428.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:160675..161814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1246995.AFR_28055
PFAMsSGL,Str_synth
Max annot lvl201174|Actinobacteria
KEGG rclassRC01072,RC01568
KEGG koko:K01757,ko:K10440
KEGG TC3.A.1.2.1,3.A.1.2.13,3.A.1.2.19
KEGG ReactionR03738
KEGG Pathwayko00901,ko01100,ko01110,ko02010,map00901,map01100,map01110,map02010
KEGG ModuleM00212
Evalue2.56e-36
EggNOG OGsCOG3386@1|root,COG3386@2|Bacteria,2GIW1@201174|Actinobacteria,4DB33@85008|Micromonosporales
EC4.3.3.2
DescriptionStrictosidine synthase
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6428Ggra6428Gracilaria gracilis GNS1m malegenetig00000918_pilon 160675..161814 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6428.t1.stop1Ggra6428.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 160675..160677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6428.t1.CDS1Ggra6428.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 160675..161814 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6428.t1.exon1Ggra6428.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 160675..161814 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6428.t1.start1Ggra6428.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 161812..161814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6428.t1Ggra6428.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 160675..161814 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6428.t1 ID=Ggra6428.t1|Name=Ggra6428.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MALLVLLSLLSAALWLVRKPLHPLHLFGEHPPSLSQVEYNKGVWAENDLL
TSAIKLPHNPTLFSPETAFVRESDCKVFVTDSRGIVWTVAQNHSAYELYA
VTGGALLGGASDPNTGALYVCDSAHGLLRIPPDPSKAHVEIVSSALSSDP
FDEVTYCDDVHVAPDGKVYFTSATKLFPQREIHGRTYNTYATYVADVLYG
SPSGRVLVYDPETRQTTELADGIAFANGIAVHPSGDYALVAESITMRIWK
LWLRGDKCGEKQLFAELPGFPDGISYDAVGKRFWITLYGPPVLASRIVPR
LPVFIRRLAVNLPPKLLVPRLPASMVAVVDEETEQVSVQYGDPSRSHGLV
AAAHRCGDYLWLGILHGSTISRFRLPDTA*
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spliced messenger RNA

>Ggra6428.t1 ID=Ggra6428.t1|Name=Ggra6428.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000918_pilon:160675..161814- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTCCTCGTTTTGCTTTCGCTGCTGTCCGCCGCTCTGTGGCTCGT
TAGAAAGCCGCTACACCCGCTCCATCTTTTCGGTGAGCATCCCCCTTCCT
TGTCGCAGGTCGAATACAACAAAGGAGTCTGGGCTGAGAACGATCTGCTC
ACCTCCGCCATCAAGCTACCACATAACCCAACTCTCTTTTCGCCAGAGAC
CGCCTTCGTTCGCGAGTCCGATTGCAAGGTATTCGTCACTGATTCGCGAG
GTATCGTCTGGACAGTGGCTCAAAACCACTCAGCGTACGAGCTATACGCA
GTCACTGGCGGCGCCTTGCTAGGCGGCGCTTCCGATCCTAACACTGGTGC
CCTCTATGTATGTGACTCTGCTCATGGCCTTCTTCGCATACCACCCGATC
CGAGCAAGGCTCATGTAGAGATTGTGTCTTCCGCATTGTCATCCGATCCG
TTTGATGAGGTCACCTACTGCGATGATGTTCACGTAGCACCCGATGGCAA
GGTGTACTTCACGTCCGCCACCAAGCTTTTCCCACAACGCGAAATACACG
GTCGCACTTACAATACCTATGCAACGTACGTTGCGGATGTTTTGTACGGC
TCTCCATCCGGCCGCGTGTTGGTGTATGATCCGGAAACAAGGCAAACCAC
CGAGCTTGCAGACGGCATTGCTTTTGCAAACGGAATAGCAGTCCATCCCA
GCGGCGACTACGCGCTCGTCGCCGAGTCAATCACCATGAGAATCTGGAAG
CTATGGCTTCGAGGCGACAAGTGTGGCGAGAAACAGCTGTTTGCAGAACT
GCCGGGCTTTCCAGACGGAATCTCATATGATGCTGTTGGAAAACGATTTT
GGATCACTCTCTACGGCCCACCTGTACTGGCCTCCCGAATTGTACCGCGA
CTGCCGGTTTTCATCCGCCGACTTGCTGTAAATCTTCCTCCCAAGCTTCT
CGTGCCGAGATTGCCCGCTAGCATGGTCGCGGTCGTTGATGAAGAAACTG
AACAAGTGAGCGTGCAATATGGAGACCCTTCCCGCTCGCATGGATTAGTT
GCAGCTGCCCATCGATGTGGGGACTATCTGTGGCTGGGAATCCTTCATGG
GAGCACCATTTCTCGCTTTCGACTTCCGGACACTGCATAG
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protein sequence of Ggra6428.t1

>Ggra6428.t1 ID=Ggra6428.t1|Name=Ggra6428.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MALLVLLSLLSAALWLVRKPLHPLHLFGEHPPSLSQVEYNKGVWAENDLL
TSAIKLPHNPTLFSPETAFVRESDCKVFVTDSRGIVWTVAQNHSAYELYA
VTGGALLGGASDPNTGALYVCDSAHGLLRIPPDPSKAHVEIVSSALSSDP
FDEVTYCDDVHVAPDGKVYFTSATKLFPQREIHGRTYNTYATYVADVLYG
SPSGRVLVYDPETRQTTELADGIAFANGIAVHPSGDYALVAESITMRIWK
LWLRGDKCGEKQLFAELPGFPDGISYDAVGKRFWITLYGPPVLASRIVPR
LPVFIRRLAVNLPPKLLVPRLPASMVAVVDEETEQVSVQYGDPSRSHGLV
AAAHRCGDYLWLGILHGSTISRFRLPDTA*
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mRNA from alignment at tig00000918_pilon:160675..161814-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6428.t1 ID=Ggra6428.t1|Name=Ggra6428.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000918_pilon:160675..161814- (Gracilaria gracilis GNS1m male)
ATGGCACTCCTCGTTTTGCTTTCGCTGCTGTCCGCCGCTCTGTGGCTCGT
TAGAAAGCCGCTACACCCGCTCCATCTTTTCGGTGAGCATCCCCCTTCCT
TGTCGCAGGTCGAATACAACAAAGGAGTCTGGGCTGAGAACGATCTGCTC
ACCTCCGCCATCAAGCTACCACATAACCCAACTCTCTTTTCGCCAGAGAC
CGCCTTCGTTCGCGAGTCCGATTGCAAGGTATTCGTCACTGATTCGCGAG
GTATCGTCTGGACAGTGGCTCAAAACCACTCAGCGTACGAGCTATACGCA
GTCACTGGCGGCGCCTTGCTAGGCGGCGCTTCCGATCCTAACACTGGTGC
CCTCTATGTATGTGACTCTGCTCATGGCCTTCTTCGCATACCACCCGATC
CGAGCAAGGCTCATGTAGAGATTGTGTCTTCCGCATTGTCATCCGATCCG
TTTGATGAGGTCACCTACTGCGATGATGTTCACGTAGCACCCGATGGCAA
GGTGTACTTCACGTCCGCCACCAAGCTTTTCCCACAACGCGAAATACACG
GTCGCACTTACAATACCTATGCAACGTACGTTGCGGATGTTTTGTACGGC
TCTCCATCCGGCCGCGTGTTGGTGTATGATCCGGAAACAAGGCAAACCAC
CGAGCTTGCAGACGGCATTGCTTTTGCAAACGGAATAGCAGTCCATCCCA
GCGGCGACTACGCGCTCGTCGCCGAGTCAATCACCATGAGAATCTGGAAG
CTATGGCTTCGAGGCGACAAGTGTGGCGAGAAACAGCTGTTTGCAGAACT
GCCGGGCTTTCCAGACGGAATCTCATATGATGCTGTTGGAAAACGATTTT
GGATCACTCTCTACGGCCCACCTGTACTGGCCTCCCGAATTGTACCGCGA
CTGCCGGTTTTCATCCGCCGACTTGCTGTAAATCTTCCTCCCAAGCTTCT
CGTGCCGAGATTGCCCGCTAGCATGGTCGCGGTCGTTGATGAAGAAACTG
AACAAGTGAGCGTGCAATATGGAGACCCTTCCCGCTCGCATGGATTAGTT
GCAGCTGCCCATCGATGTGGGGACTATCTGTGGCTGGGAATCCTTCATGG
GAGCACCATTTCTCGCTTTCGACTTCCGGACACTGCATAG
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Coding sequence (CDS) from alignment at tig00000918_pilon:160675..161814-

>Ggra6428.t1 ID=Ggra6428.t1|Name=Ggra6428.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000918_pilon:160675..161814- (Gracilaria gracilis GNS1m male)
ATGGCACTCCTCGTTTTGCTTTCGCTGCTGTCCGCCGCTCTGTGGCTCGT
TAGAAAGCCGCTACACCCGCTCCATCTTTTCGGTGAGCATCCCCCTTCCT
TGTCGCAGGTCGAATACAACAAAGGAGTCTGGGCTGAGAACGATCTGCTC
ACCTCCGCCATCAAGCTACCACATAACCCAACTCTCTTTTCGCCAGAGAC
CGCCTTCGTTCGCGAGTCCGATTGCAAGGTATTCGTCACTGATTCGCGAG
GTATCGTCTGGACAGTGGCTCAAAACCACTCAGCGTACGAGCTATACGCA
GTCACTGGCGGCGCCTTGCTAGGCGGCGCTTCCGATCCTAACACTGGTGC
CCTCTATGTATGTGACTCTGCTCATGGCCTTCTTCGCATACCACCCGATC
CGAGCAAGGCTCATGTAGAGATTGTGTCTTCCGCATTGTCATCCGATCCG
TTTGATGAGGTCACCTACTGCGATGATGTTCACGTAGCACCCGATGGCAA
GGTGTACTTCACGTCCGCCACCAAGCTTTTCCCACAACGCGAAATACACG
GTCGCACTTACAATACCTATGCAACGTACGTTGCGGATGTTTTGTACGGC
TCTCCATCCGGCCGCGTGTTGGTGTATGATCCGGAAACAAGGCAAACCAC
CGAGCTTGCAGACGGCATTGCTTTTGCAAACGGAATAGCAGTCCATCCCA
GCGGCGACTACGCGCTCGTCGCCGAGTCAATCACCATGAGAATCTGGAAG
CTATGGCTTCGAGGCGACAAGTGTGGCGAGAAACAGCTGTTTGCAGAACT
GCCGGGCTTTCCAGACGGAATCTCATATGATGCTGTTGGAAAACGATTTT
GGATCACTCTCTACGGCCCACCTGTACTGGCCTCCCGAATTGTACCGCGA
CTGCCGGTTTTCATCCGCCGACTTGCTGTAAATCTTCCTCCCAAGCTTCT
CGTGCCGAGATTGCCCGCTAGCATGGTCGCGGTCGTTGATGAAGAAACTG
AACAAGTGAGCGTGCAATATGGAGACCCTTCCCGCTCGCATGGATTAGTT
GCAGCTGCCCATCGATGTGGGGACTATCTGTGGCTGGGAATCCTTCATGG
GAGCACCATTTCTCGCTTTCGACTTCCGGACACTGCATAG
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