Ggra6427.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6427.t1
Unique Name	Ggra6427.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	726

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000918_pilon	contig	tig00000918_pilon:157919..160096 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6427	Ggra6427	Gracilaria gracilis GNS1m male	gene	tig00000918_pilon 157919..160096 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6427.t1.start1	Ggra6427.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000918_pilon 157919..157921 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6427.t1.CDS1	Ggra6427.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000918_pilon 157919..160096 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6427.t1.exon1	Ggra6427.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000918_pilon 157919..160096 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6427.t1.stop1	Ggra6427.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000918_pilon 160094..160096 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6427.t1	Ggra6427.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000918_pilon 157919..160096 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000918_pilon:157919..160096+
coding sequence from alignment at tig00000918_pilon:157919..160096+

mRNA sequence

>Ggra6427.t1 ID=Ggra6427.t1|Name=Ggra6427.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp
MPTGGKTSKLISISISAAQQVLHKTADCLDKLKIDPAASHSSSSAGQPQY
SYPPPSIYPYPPGAATPPQFYPHAPTPPPPPPPPPPPSNPPGTAPTPPPP
PSDQPFAAPPNSLYSPHRPTHAPHVADQSSYASPPSHPPSSTSYPSPPYP
GRPPSYEHAPNTSTPSLRPPPAAPHHPSHPHDASASTPNLYPLPSPSAPP
LTPPPGYPQPPQPSHALPPKYYSRPAHNSSPATVSQQNNASYDASHLQRP
YVSAPDLPSPEYDQYQPASPPPNSYHPGHIPHSHSSPAVPVHYPSSSGNH
VPSRPSSRYDPVGGRLNASPPEASQPAPEGYPHPPCEADSESYHTANAPL
QSPFILPSALAGTPDYPHGSPSAPYSATPYSPTASASEGTGPPSPSVAST
CQMSCAAFKIVPVRTERPSETPELFMEDLLEEAYKRQNSVAHTLGRLVLD
EACKGLSRVLNPADDTDIQMFGIQLRRADYAACEQDYHRCARDNIPIFAI
SYTHRDRGVGRNRFSEDQWENFEVAMSVLAKSNVREVRIWLDQCLWLRDS
NLGCWAHTGIIPYVIWPVFSLGVRAPERDRTFDSFYRVWPYLEETAALWS
LGVITTSEIRQENENEPPSPHTVIRHNMRKCVDPQACLYLLFHAICDGKI
TDLECACKEDVHELTDMAMFNMDHDTEVVIVGSNWRARTSPLEGRSGARS
VSYPRSTPKSQFITAFSSGDLYLDV*

spliced messenger RNA

>Ggra6427.t1 ID=Ggra6427.t1|Name=Ggra6427.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2178bp|location=Sequence derived from alignment at tig00000918_pilon:157919..160096+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACCGGCGGAAAGACCTCCAAGCTGATTTCCATCAGCATCAGCGC
CGCGCAGCAGGTCTTGCACAAGACCGCCGACTGTTTGGACAAGCTCAAGA
TTGATCCCGCAGCCTCGCATTCTTCGTCGTCCGCTGGCCAACCCCAATAC
TCGTACCCGCCTCCATCTATCTATCCATATCCACCGGGTGCAGCCACGCC
CCCGCAATTCTACCCGCATGCACCCACCCCGcctcctcctcctcctcctc
ctcctcctccATCAAACCCGCCTGGTACCGCACCTACACCACCACCGCCT
CCGTCCGACCAGCCGTTCGCTGCTCCCCCAAACTCCTTGTACTCTCCCCA
CCGCCCTACTCACGCGCCACATGTAGCGGACCAATCCTCGTACGCCAGCC
CTCCCAGCCACCCTCCGTCATCAACTTCGTATCCTTCACCACCGTACCCA
GGTCGTCCTCCGTCTTATGAACACGCACCAAACACGTCAACACCATCTCT
TCGTCCGCCGCCTGCAGCACCGCACCACCCTTCTCATCCGCATGACGCCA
GTGCCTCGACGCCGAACCTATATCCTTTGCCGTCTCCGTCCGCCCCCCCG
CTCACACCTCCACCAGGTTATCCTCAACCACCTCAACCGTCACATGCGCT
ACCTCCAAAATATTACTCACGCCCTGCTCATAATTCGTCGCCGGCAACCG
TTTCCCAACAAAACAACGCTTCTTACGACGCCTCTCATTTGCAGCGCCCG
TATGTGTCGGCACCAGACCTACCATCGCCCGAGTATGACCAGTACCAACC
CGCTTCACCACCGCCGAACAGCTATCACCCTGGCCACATCCCTCACTCTC
ACAGCTCGCCGGCCGTGCCGGTGCACTACCCATCTTCTTCAGGTAACCAT
GTCCCTTCTCGTCCCTCGTCAAGGTATGATCCAGTCGGGGGGAGGCTGAA
CGCATCCCCACCGGAAGCCAGTCAACCTGCACCGGAAGGATACCCTCATC
CTCCGTGCGAGGCCGATAGTGAGTCGTACCATACCGCAAATGCGCCGCTT
CAAAGCCCCTTTATTCTGCCTTCCGCCTTGGCAGGTACTCCAGACTATCC
GCATGGTTCTCCATCGGCCCCGTATTCCGCCACACCATATTCACCCACAG
CCTCCGCTTCAGAGGGCACTGGCCCTCCATCGCCTTCAGTTGCTTCTACT
TGTCAAATGTCATGTGCCGCCTTCAAGATCGTTCCAGTTCGGACTGAACG
TCCTTCCGAAACACCTGAGCTGTTCATGGAAGATTTGCTGGAAGAAGCTT
ACAAACGACAAAATTCGGTTGCTCACACCCTTGGCAGGCTGGTGTTGGAT
GAAGCTTGCAAAGGCCTCTCTCGTGTTTTAAATCCAGCCGATGATACCGA
CATACAAATGTTCGGCATTCAGTTGCGACGCGCCGATTATGCTGCTTGTG
AACAAGATTATCATCGCTGTGCCAGGGATAACATTCCCATTTTTGCTATC
TCGTACACTCATCGCGACCGAGGCGTTGGTCGCAACAGGTTTTCCGAGGA
TCAGTGGGAGAATTTTGAAGTAGCGATGAGTGTACTGGCCAAGTCCAACG
TACGAGAGGTTCGAATATGGCTTGATCAATGCCTTTGGCTGCGTGATTCT
AATCTGGGCTGTTGGGCGCACACAGGAATCATACCTTACGTCATCTGGCC
TGTTTTCAGTCTTGGTGTGAGAGCACCAGAGAGGGATAGGACCTTTGATT
CGTTTTATCGTGTGTGGCCATATTTGGAGGAGACTGCTGCACTCTGGTCT
TTGGGAGTGATAACTACGAGTGAAATTCGTCAGGAGAATGAAAACGAGCC
TCCGTCTCCTCACACAGTTATTCGCCATAACATGCGAAAATGTGTTGACC
CCCAAGCTTGCCTTTACTTATTGTTTCATGCTATCTGCGATGGCAAAATC
ACAGACCTCGAATGTGCATGCAAGGAAGACGTCCATGAGCTCACGGACAT
GGCAATGTTTAACATGGACCACGACACAGAAGTTGTGATAGTCGGAAGCA
ATTGGAGAGCGCGTACTTCACCTTTAGAGGGAAGAAGTGGAGCTCGAAGC
GTTTCGTATCCCAGATCGACGCCTAAGAGCCAGTTCATAACCGCGTTTTC
ATCCGGAGACTTGTACTTGGATGTCTGA

protein sequence of Ggra6427.t1

>Ggra6427.t1 ID=Ggra6427.t1|Name=Ggra6427.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=726bp
MPTGGKTSKLISISISAAQQVLHKTADCLDKLKIDPAASHSSSSAGQPQY
SYPPPSIYPYPPGAATPPQFYPHAPTPPPPPPPPPPPSNPPGTAPTPPPP
PSDQPFAAPPNSLYSPHRPTHAPHVADQSSYASPPSHPPSSTSYPSPPYP
GRPPSYEHAPNTSTPSLRPPPAAPHHPSHPHDASASTPNLYPLPSPSAPP
LTPPPGYPQPPQPSHALPPKYYSRPAHNSSPATVSQQNNASYDASHLQRP
YVSAPDLPSPEYDQYQPASPPPNSYHPGHIPHSHSSPAVPVHYPSSSGNH
VPSRPSSRYDPVGGRLNASPPEASQPAPEGYPHPPCEADSESYHTANAPL
QSPFILPSALAGTPDYPHGSPSAPYSATPYSPTASASEGTGPPSPSVAST
CQMSCAAFKIVPVRTERPSETPELFMEDLLEEAYKRQNSVAHTLGRLVLD
EACKGLSRVLNPADDTDIQMFGIQLRRADYAACEQDYHRCARDNIPIFAI
SYTHRDRGVGRNRFSEDQWENFEVAMSVLAKSNVREVRIWLDQCLWLRDS
NLGCWAHTGIIPYVIWPVFSLGVRAPERDRTFDSFYRVWPYLEETAALWS
LGVITTSEIRQENENEPPSPHTVIRHNMRKCVDPQACLYLLFHAICDGKI
TDLECACKEDVHELTDMAMFNMDHDTEVVIVGSNWRARTSPLEGRSGARS
VSYPRSTPKSQFITAFSSGDLYLDV*

mRNA from alignment at tig00000918_pilon:157919..160096+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6427.t1 ID=Ggra6427.t1|Name=Ggra6427.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2178bp|location=Sequence derived from alignment at tig00000918_pilon:157919..160096+ (Gracilaria gracilis GNS1m male)
ATGCCCACCGGCGGAAAGACCTCCAAGCTGATTTCCATCAGCATCAGCGC
CGCGCAGCAGGTCTTGCACAAGACCGCCGACTGTTTGGACAAGCTCAAGA
TTGATCCCGCAGCCTCGCATTCTTCGTCGTCCGCTGGCCAACCCCAATAC
TCGTACCCGCCTCCATCTATCTATCCATATCCACCGGGTGCAGCCACGCC
CCCGCAATTCTACCCGCATGCACCCACCCCGcctcctcctcctcctcctc
ctcctcctccATCAAACCCGCCTGGTACCGCACCTACACCACCACCGCCT
CCGTCCGACCAGCCGTTCGCTGCTCCCCCAAACTCCTTGTACTCTCCCCA
CCGCCCTACTCACGCGCCACATGTAGCGGACCAATCCTCGTACGCCAGCC
CTCCCAGCCACCCTCCGTCATCAACTTCGTATCCTTCACCACCGTACCCA
GGTCGTCCTCCGTCTTATGAACACGCACCAAACACGTCAACACCATCTCT
TCGTCCGCCGCCTGCAGCACCGCACCACCCTTCTCATCCGCATGACGCCA
GTGCCTCGACGCCGAACCTATATCCTTTGCCGTCTCCGTCCGCCCCCCCG
CTCACACCTCCACCAGGTTATCCTCAACCACCTCAACCGTCACATGCGCT
ACCTCCAAAATATTACTCACGCCCTGCTCATAATTCGTCGCCGGCAACCG
TTTCCCAACAAAACAACGCTTCTTACGACGCCTCTCATTTGCAGCGCCCG
TATGTGTCGGCACCAGACCTACCATCGCCCGAGTATGACCAGTACCAACC
CGCTTCACCACCGCCGAACAGCTATCACCCTGGCCACATCCCTCACTCTC
ACAGCTCGCCGGCCGTGCCGGTGCACTACCCATCTTCTTCAGGTAACCAT
GTCCCTTCTCGTCCCTCGTCAAGGTATGATCCAGTCGGGGGGAGGCTGAA
CGCATCCCCACCGGAAGCCAGTCAACCTGCACCGGAAGGATACCCTCATC
CTCCGTGCGAGGCCGATAGTGAGTCGTACCATACCGCAAATGCGCCGCTT
CAAAGCCCCTTTATTCTGCCTTCCGCCTTGGCAGGTACTCCAGACTATCC
GCATGGTTCTCCATCGGCCCCGTATTCCGCCACACCATATTCACCCACAG
CCTCCGCTTCAGAGGGCACTGGCCCTCCATCGCCTTCAGTTGCTTCTACT
TGTCAAATGTCATGTGCCGCCTTCAAGATCGTTCCAGTTCGGACTGAACG
TCCTTCCGAAACACCTGAGCTGTTCATGGAAGATTTGCTGGAAGAAGCTT
ACAAACGACAAAATTCGGTTGCTCACACCCTTGGCAGGCTGGTGTTGGAT
GAAGCTTGCAAAGGCCTCTCTCGTGTTTTAAATCCAGCCGATGATACCGA
CATACAAATGTTCGGCATTCAGTTGCGACGCGCCGATTATGCTGCTTGTG
AACAAGATTATCATCGCTGTGCCAGGGATAACATTCCCATTTTTGCTATC
TCGTACACTCATCGCGACCGAGGCGTTGGTCGCAACAGGTTTTCCGAGGA
TCAGTGGGAGAATTTTGAAGTAGCGATGAGTGTACTGGCCAAGTCCAACG
TACGAGAGGTTCGAATATGGCTTGATCAATGCCTTTGGCTGCGTGATTCT
AATCTGGGCTGTTGGGCGCACACAGGAATCATACCTTACGTCATCTGGCC
TGTTTTCAGTCTTGGTGTGAGAGCACCAGAGAGGGATAGGACCTTTGATT
CGTTTTATCGTGTGTGGCCATATTTGGAGGAGACTGCTGCACTCTGGTCT
TTGGGAGTGATAACTACGAGTGAAATTCGTCAGGAGAATGAAAACGAGCC
TCCGTCTCCTCACACAGTTATTCGCCATAACATGCGAAAATGTGTTGACC
CCCAAGCTTGCCTTTACTTATTGTTTCATGCTATCTGCGATGGCAAAATC
ACAGACCTCGAATGTGCATGCAAGGAAGACGTCCATGAGCTCACGGACAT
GGCAATGTTTAACATGGACCACGACACAGAAGTTGTGATAGTCGGAAGCA
ATTGGAGAGCGCGTACTTCACCTTTAGAGGGAAGAAGTGGAGCTCGAAGC
GTTTCGTATCCCAGATCGACGCCTAAGAGCCAGTTCATAACCGCGTTTTC
ATCCGGAGACTTGTACTTGGATGTCTGA

Coding sequence (CDS) from alignment at tig00000918_pilon:157919..160096+

>Ggra6427.t1 ID=Ggra6427.t1|Name=Ggra6427.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2178bp|location=Sequence derived from alignment at tig00000918_pilon:157919..160096+ (Gracilaria gracilis GNS1m male)
ATGCCCACCGGCGGAAAGACCTCCAAGCTGATTTCCATCAGCATCAGCGC
CGCGCAGCAGGTCTTGCACAAGACCGCCGACTGTTTGGACAAGCTCAAGA
TTGATCCCGCAGCCTCGCATTCTTCGTCGTCCGCTGGCCAACCCCAATAC
TCGTACCCGCCTCCATCTATCTATCCATATCCACCGGGTGCAGCCACGCC
CCCGCAATTCTACCCGCATGCACCCACCCCGcctcctcctcctcctcctc
ctcctcctccATCAAACCCGCCTGGTACCGCACCTACACCACCACCGCCT
CCGTCCGACCAGCCGTTCGCTGCTCCCCCAAACTCCTTGTACTCTCCCCA
CCGCCCTACTCACGCGCCACATGTAGCGGACCAATCCTCGTACGCCAGCC
CTCCCAGCCACCCTCCGTCATCAACTTCGTATCCTTCACCACCGTACCCA
GGTCGTCCTCCGTCTTATGAACACGCACCAAACACGTCAACACCATCTCT
TCGTCCGCCGCCTGCAGCACCGCACCACCCTTCTCATCCGCATGACGCCA
GTGCCTCGACGCCGAACCTATATCCTTTGCCGTCTCCGTCCGCCCCCCCG
CTCACACCTCCACCAGGTTATCCTCAACCACCTCAACCGTCACATGCGCT
ACCTCCAAAATATTACTCACGCCCTGCTCATAATTCGTCGCCGGCAACCG
TTTCCCAACAAAACAACGCTTCTTACGACGCCTCTCATTTGCAGCGCCCG
TATGTGTCGGCACCAGACCTACCATCGCCCGAGTATGACCAGTACCAACC
CGCTTCACCACCGCCGAACAGCTATCACCCTGGCCACATCCCTCACTCTC
ACAGCTCGCCGGCCGTGCCGGTGCACTACCCATCTTCTTCAGGTAACCAT
GTCCCTTCTCGTCCCTCGTCAAGGTATGATCCAGTCGGGGGGAGGCTGAA
CGCATCCCCACCGGAAGCCAGTCAACCTGCACCGGAAGGATACCCTCATC
CTCCGTGCGAGGCCGATAGTGAGTCGTACCATACCGCAAATGCGCCGCTT
CAAAGCCCCTTTATTCTGCCTTCCGCCTTGGCAGGTACTCCAGACTATCC
GCATGGTTCTCCATCGGCCCCGTATTCCGCCACACCATATTCACCCACAG
CCTCCGCTTCAGAGGGCACTGGCCCTCCATCGCCTTCAGTTGCTTCTACT
TGTCAAATGTCATGTGCCGCCTTCAAGATCGTTCCAGTTCGGACTGAACG
TCCTTCCGAAACACCTGAGCTGTTCATGGAAGATTTGCTGGAAGAAGCTT
ACAAACGACAAAATTCGGTTGCTCACACCCTTGGCAGGCTGGTGTTGGAT
GAAGCTTGCAAAGGCCTCTCTCGTGTTTTAAATCCAGCCGATGATACCGA
CATACAAATGTTCGGCATTCAGTTGCGACGCGCCGATTATGCTGCTTGTG
AACAAGATTATCATCGCTGTGCCAGGGATAACATTCCCATTTTTGCTATC
TCGTACACTCATCGCGACCGAGGCGTTGGTCGCAACAGGTTTTCCGAGGA
TCAGTGGGAGAATTTTGAAGTAGCGATGAGTGTACTGGCCAAGTCCAACG
TACGAGAGGTTCGAATATGGCTTGATCAATGCCTTTGGCTGCGTGATTCT
AATCTGGGCTGTTGGGCGCACACAGGAATCATACCTTACGTCATCTGGCC
TGTTTTCAGTCTTGGTGTGAGAGCACCAGAGAGGGATAGGACCTTTGATT
CGTTTTATCGTGTGTGGCCATATTTGGAGGAGACTGCTGCACTCTGGTCT
TTGGGAGTGATAACTACGAGTGAAATTCGTCAGGAGAATGAAAACGAGCC
TCCGTCTCCTCACACAGTTATTCGCCATAACATGCGAAAATGTGTTGACC
CCCAAGCTTGCCTTTACTTATTGTTTCATGCTATCTGCGATGGCAAAATC
ACAGACCTCGAATGTGCATGCAAGGAAGACGTCCATGAGCTCACGGACAT
GGCAATGTTTAACATGGACCACGACACAGAAGTTGTGATAGTCGGAAGCA
ATTGGAGAGCGCGTACTTCACCTTTAGAGGGAAGAAGTGGAGCTCGAAGC
GTTTCGTATCCCAGATCGACGCCTAAGAGCCAGTTCATAACCGCGTTTTC
ATCCGGAGACTTGTACTTGGATGTCTGA