Ggra6423.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6423.t1
Unique Name	Ggra6423.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	294

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000918_pilon	contig	tig00000918_pilon:142120..143001 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	59689.fgenesh1_pm.C_scaffold_4001859
PFAMs	DER1,Rhomboid,UBA
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0032182,GO:0043130
Evalue	2.57e-44
EggNOG OGs	KOG4463@1\|root,KOG4463@2759\|Eukaryota,37QHJ@33090\|Viridiplantae,3GB8C@35493\|Streptophyta,3HUFJ@3699\|Brassicales
Description	domain-containing protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6423	Ggra6423	Gracilaria gracilis GNS1m male	gene	tig00000918_pilon 142120..143001 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6423.t1.start1	Ggra6423.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000918_pilon 142120..142122 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6423.t1.CDS1	Ggra6423.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000918_pilon 142120..143001 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6423.t1.exon1	Ggra6423.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000918_pilon 142120..143001 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6423.t1.stop1	Ggra6423.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000918_pilon 142999..143001 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6423.t1	Ggra6423.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000918_pilon 142120..143001 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000918_pilon:142120..143001+
coding sequence from alignment at tig00000918_pilon:142120..143001+

mRNA sequence

>Ggra6423.t1 ID=Ggra6423.t1|Name=Ggra6423.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MLNQGGLPGFYNAPITKVVIVSVVLFTVFGSITSSQYRLTLQMTDVVQRL
QIWRLLSHNLVFTTPGELIFGTILLYYFRQLERQLGSSRFASFAIISAVF
YTAILASLQLIWSSVHSASGPYSLILACLVFFYFETPKLYRFEVLGALEL
SDKTFVYLIATQLLLLSSPRSLLSCAASILAGIIYRIPIIRENADMPVVI
ISLCSRYVLPLLGTTRHSSSRGRSRRHNDPNSANLRRLEAAAVPPRQTTT
HEAETSVGTLVSMGFSEEQATTALQRTDNDLQRATELLLSEGS*

spliced messenger RNA

>Ggra6423.t1 ID=Ggra6423.t1|Name=Ggra6423.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000918_pilon:142120..143001+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAATCAAGGTGGCCTTCCCGGGTTTTACAATGCCCCGATTACCAA
AGTTGTCATCGTCTCCGTCGTTCTGTTTACCGTTTTTGGATCCATAACTA
GTTCGCAGTATCGCTTGACGCTGCAAATGACCGATGTCGTCCAAAGACTT
CAAATCTGGCGCTTGCTTTCTCATAACCTTGTCTTCACTACTCCCGGTGA
GCTTATCTTTGGCACCATCTTATTGTACTACTTCCGCCAGCTTGAAAGGC
AACTCGGTTCATCGCGATTTGCGTCGTTCGCAATCATCTCAGCCGTATTC
TACACTGCTATCCTTGCATCTCTTCAACTCATATGGTCATCTGTACATTC
AGCCTCTGGACCATACTCTCTTATACTCGCCTGTCTTGTTTTCTTCTATT
TCGAGACGCCCAAGCTATACCGTTTCGAGGTTCTTGGTGCGTTAGAATTG
TCCGACAAAACGTTTGTCTACCTCATAGCCACACAATTGCTCTTGTTGTC
GTCGCCTAGATCTCTGCTATCATGCGCTGCCTCGATTCTTGCGGGAATTA
TTTACCGCATCCCGATAATCCGCGAGAACGCCGATATGCCGGTCGTTATC
ATCTCGTTGTGTTCCCGCTATGTGCTCCCGCTGCTTGGCACCACCAGACA
TAGTAGCTCAAGGGGAAGATCGCGACGTCACAATGATCCCAACTCGGCCA
ATCTCAGGAGACTTGAGGCAGCAGCCGTTCCTCCGCGGCAAACCACAACC
CATGAAGCAGAGACAAGTGTTGGTACTCTTGTGTCGATGGGATTCTCAGA
GGAGCAGGCAACTACTGCTCTTCAACGAACAGATAATGATTTGCAAAGGG
CTACCGAACTCTTATTGAGTGAAGGAAGCTAA

protein sequence of Ggra6423.t1

>Ggra6423.t1 ID=Ggra6423.t1|Name=Ggra6423.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MLNQGGLPGFYNAPITKVVIVSVVLFTVFGSITSSQYRLTLQMTDVVQRL
QIWRLLSHNLVFTTPGELIFGTILLYYFRQLERQLGSSRFASFAIISAVF
YTAILASLQLIWSSVHSASGPYSLILACLVFFYFETPKLYRFEVLGALEL
SDKTFVYLIATQLLLLSSPRSLLSCAASILAGIIYRIPIIRENADMPVVI
ISLCSRYVLPLLGTTRHSSSRGRSRRHNDPNSANLRRLEAAAVPPRQTTT
HEAETSVGTLVSMGFSEEQATTALQRTDNDLQRATELLLSEGS*

mRNA from alignment at tig00000918_pilon:142120..143001+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6423.t1 ID=Ggra6423.t1|Name=Ggra6423.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000918_pilon:142120..143001+ (Gracilaria gracilis GNS1m male)
ATGCTCAATCAAGGTGGCCTTCCCGGGTTTTACAATGCCCCGATTACCAA
AGTTGTCATCGTCTCCGTCGTTCTGTTTACCGTTTTTGGATCCATAACTA
GTTCGCAGTATCGCTTGACGCTGCAAATGACCGATGTCGTCCAAAGACTT
CAAATCTGGCGCTTGCTTTCTCATAACCTTGTCTTCACTACTCCCGGTGA
GCTTATCTTTGGCACCATCTTATTGTACTACTTCCGCCAGCTTGAAAGGC
AACTCGGTTCATCGCGATTTGCGTCGTTCGCAATCATCTCAGCCGTATTC
TACACTGCTATCCTTGCATCTCTTCAACTCATATGGTCATCTGTACATTC
AGCCTCTGGACCATACTCTCTTATACTCGCCTGTCTTGTTTTCTTCTATT
TCGAGACGCCCAAGCTATACCGTTTCGAGGTTCTTGGTGCGTTAGAATTG
TCCGACAAAACGTTTGTCTACCTCATAGCCACACAATTGCTCTTGTTGTC
GTCGCCTAGATCTCTGCTATCATGCGCTGCCTCGATTCTTGCGGGAATTA
TTTACCGCATCCCGATAATCCGCGAGAACGCCGATATGCCGGTCGTTATC
ATCTCGTTGTGTTCCCGCTATGTGCTCCCGCTGCTTGGCACCACCAGACA
TAGTAGCTCAAGGGGAAGATCGCGACGTCACAATGATCCCAACTCGGCCA
ATCTCAGGAGACTTGAGGCAGCAGCCGTTCCTCCGCGGCAAACCACAACC
CATGAAGCAGAGACAAGTGTTGGTACTCTTGTGTCGATGGGATTCTCAGA
GGAGCAGGCAACTACTGCTCTTCAACGAACAGATAATGATTTGCAAAGGG
CTACCGAACTCTTATTGAGTGAAGGAAGCTAA

Coding sequence (CDS) from alignment at tig00000918_pilon:142120..143001+

>Ggra6423.t1 ID=Ggra6423.t1|Name=Ggra6423.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000918_pilon:142120..143001+ (Gracilaria gracilis GNS1m male)
ATGCTCAATCAAGGTGGCCTTCCCGGGTTTTACAATGCCCCGATTACCAA
AGTTGTCATCGTCTCCGTCGTTCTGTTTACCGTTTTTGGATCCATAACTA
GTTCGCAGTATCGCTTGACGCTGCAAATGACCGATGTCGTCCAAAGACTT
CAAATCTGGCGCTTGCTTTCTCATAACCTTGTCTTCACTACTCCCGGTGA
GCTTATCTTTGGCACCATCTTATTGTACTACTTCCGCCAGCTTGAAAGGC
AACTCGGTTCATCGCGATTTGCGTCGTTCGCAATCATCTCAGCCGTATTC
TACACTGCTATCCTTGCATCTCTTCAACTCATATGGTCATCTGTACATTC
AGCCTCTGGACCATACTCTCTTATACTCGCCTGTCTTGTTTTCTTCTATT
TCGAGACGCCCAAGCTATACCGTTTCGAGGTTCTTGGTGCGTTAGAATTG
TCCGACAAAACGTTTGTCTACCTCATAGCCACACAATTGCTCTTGTTGTC
GTCGCCTAGATCTCTGCTATCATGCGCTGCCTCGATTCTTGCGGGAATTA
TTTACCGCATCCCGATAATCCGCGAGAACGCCGATATGCCGGTCGTTATC
ATCTCGTTGTGTTCCCGCTATGTGCTCCCGCTGCTTGGCACCACCAGACA
TAGTAGCTCAAGGGGAAGATCGCGACGTCACAATGATCCCAACTCGGCCA
ATCTCAGGAGACTTGAGGCAGCAGCCGTTCCTCCGCGGCAAACCACAACC
CATGAAGCAGAGACAAGTGTTGGTACTCTTGTGTCGATGGGATTCTCAGA
GGAGCAGGCAACTACTGCTCTTCAACGAACAGATAATGATTTGCAAAGGG
CTACCGAACTCTTATTGAGTGAAGGAAGCTAA