Ggra6420.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6420.t1
Unique Name	Ggra6420.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	515

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000918_pilon	contig	tig00000918_pilon:131606..133150 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705580.1
PFAMs	MFS_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15378
KEGG TC	2.A.2.4,2.A.2.6
Evalue	7.92e-117
EggNOG OGs	KOG0637@1\|root,KOG0637@2759\|Eukaryota
Description	sucrose transmembrane transporter activity
COG category	S
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6420	Ggra6420	Gracilaria gracilis GNS1m male	gene	tig00000918_pilon 131606..133150 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6420.t1.start1	Ggra6420.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000918_pilon 131606..131608 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6420.t1.CDS1	Ggra6420.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000918_pilon 131606..133150 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6420.t1.exon1	Ggra6420.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000918_pilon 131606..133150 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6420.t1.stop1	Ggra6420.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000918_pilon 133148..133150 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6420.t1	Ggra6420.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000918_pilon 131606..133150 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000918_pilon:131606..133150+
coding sequence from alignment at tig00000918_pilon:131606..133150+

mRNA sequence

>Ggra6420.t1 ID=Ggra6420.t1|Name=Ggra6420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=515bp
MTTFEGPDVSTDGLQPQLPAGSAGEAPPLARWRIILCAVAMCGVAVSYSA
QVNLGTSQLLLLGLSERAVSLAWLAGPLSGLIVQPIVGHFSDRCASPFGR
RRPFLVAGAVLTAAALLLFANAALVAEMLGASKSALPLAIFAFFLLDFSV
QAVQGPLRALITEFVPRDQRHVGNAFIGVFTGLGNLLGSVFTAVGLARYL
PYFEHDVQAVFALAAFILLLTVAISVCSTKEAPVSLHQYESVAPNSNSAS
ENGAIDDSHDSSQTPGGSFLYALRNLPQPYWHVFTIQLCTWCGFFALFVY
VNAWVGKNIYLGDGTAEADSQPRETFEEGVRLGGKGNALTAAVTLVYSLA
LPTLMRRFGSMPLYVASQIVEAAVLMVAPLIRGTPGQQRPSQALKAITVT
DIGLFGIVWGTTMGVPWTLIGNALESKPWYRDRVGLFQMIFNASQSGPQL
IVAVIAPLILTLFKDDPSAVMFFGGVLALVGAVLVVVLRVGKPATFNETS
KVLLPVHGFGERES*

spliced messenger RNA

>Ggra6420.t1 ID=Ggra6420.t1|Name=Ggra6420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000918_pilon:131606..133150+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACCTTCGAAGGCCCGGACGTCTCCACAGACGGTCTGCAGCCGCA
GCTACCTGCTGGTTCTGCCGGCGAGGCGCCACCGCTCGCTCGATGGCGCA
TCATCCTGTGCGCCGTCGCCATGTGCGGCGTCGCCGTCTCATACTCAGCG
CAGGTCAACCTAGGAACGTCGCAGCTACTTCTGCTCGGACTATCCGAACG
TGCCGTATCACTTGCGTGGCTGGCTGGGCCTCTCTCCGGTCTCATTGTGC
AGCCCATCGTCGGTCATTTCTCTGAccgttgcgcgtcgccgttcggtcgt
cgtcgcccgtttctcgtcgcgggtgccgtGCTTACCGCCGCTGCCTTACT
ACTGTTTGCGAACGCTGCGCTTGTGGCCGAAATGCTTGGCGCGTCCAAGT
CGGCGTTGCCACTTGCTATTTTTGCTTTCTTCCTGCTTGACTTTTCTGTG
CAGGCCGTTCAGGGTCCGTTACGAGCGCTTATTACCGAATTCGTTCCTCG
AGACCAACGTCATGTGGGCAATGCGTTTATTGGTGTGTTTACTGGCCTCG
GTAATCTGTTGGGTAGTGTCTTCACTGCCGTCGGCCTTGCTCGCTATCTA
CCGTACTTTGAACACGACGTGCAGGCTGTCTTTGCACTTGCCGCCTTTAT
TCTGCTCCTTACCGTAGCGATATCAGTGTGTTCTACTAAAGAGGCACCAG
TTTCTCTTCACCAGTACGAATCAGTAGCGCCGAATTCGAACAGTGCTTCC
GAGAACGGTGCAATTGATGACTCGCACGATTCATCTCAAACTCCTGGCGG
TTCATTTCTGTACGCTTTACGCAATTTGCCGCAACCGTACTGGCACGTGT
TCACTATTCAACTATGCACGTGGTGTGGTTTCTTCGCGCTCTTTGTCTAT
GTCAATGCATGGGTTGGGAAGAATATCTATCTGGGTGATGGCACTGCAGA
GGCGGACAGCCAACCAAGAGAAACTTTTGAGGAGGGAGTCCGTCTGGGCG
GTAAGGGAAATGCACTCACTGCTGCCGTCACCCTAGTCTACTCCCTTGCA
CTACCGACACTGATGCGCCGTTTCGGCAGTATGCCTTTATATGTTGCTAG
CCAAATTGTGGAGGCTGCCGTTCTAATGGTTGCGCCCCTTATAAGAGGAA
CACCTGGCCAGCAGAGGCCGTCACAGGCGCTCAAGGCAATCACGGTGACG
GACATTGGGCTGTTTGGCATAGTTTGGGGCACTACGATGGGTGTCCCATG
GACGCTAATCGGAAATGCTCTAGAGTCGAAACCATGGTATCGAGATCGTG
TGGGTCTGTTTCAGATGATTTTCAATGCTAGTCAAAGTGGGCCACAGCTT
ATTGTCGCAGTCATCGCCCCGCTGATCCTCACTTTGTTCAAAGATGACCC
TTCTGCCGTCATGTTTTTCGGCGGTGTTTTGGCACTTGTGGGCGCAGTGC
TTGTTGTTGTACTTCGAGTTGGGAAACCCGCTACATTCAATGAGACCTCG
AAAGTACTTCTACCCGTTCATGGTTTTGGTGAGCGGGAAAGTTAA

protein sequence of Ggra6420.t1

>Ggra6420.t1 ID=Ggra6420.t1|Name=Ggra6420.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=515bp
MTTFEGPDVSTDGLQPQLPAGSAGEAPPLARWRIILCAVAMCGVAVSYSA
QVNLGTSQLLLLGLSERAVSLAWLAGPLSGLIVQPIVGHFSDRCASPFGR
RRPFLVAGAVLTAAALLLFANAALVAEMLGASKSALPLAIFAFFLLDFSV
QAVQGPLRALITEFVPRDQRHVGNAFIGVFTGLGNLLGSVFTAVGLARYL
PYFEHDVQAVFALAAFILLLTVAISVCSTKEAPVSLHQYESVAPNSNSAS
ENGAIDDSHDSSQTPGGSFLYALRNLPQPYWHVFTIQLCTWCGFFALFVY
VNAWVGKNIYLGDGTAEADSQPRETFEEGVRLGGKGNALTAAVTLVYSLA
LPTLMRRFGSMPLYVASQIVEAAVLMVAPLIRGTPGQQRPSQALKAITVT
DIGLFGIVWGTTMGVPWTLIGNALESKPWYRDRVGLFQMIFNASQSGPQL
IVAVIAPLILTLFKDDPSAVMFFGGVLALVGAVLVVVLRVGKPATFNETS
KVLLPVHGFGERES*

mRNA from alignment at tig00000918_pilon:131606..133150+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6420.t1 ID=Ggra6420.t1|Name=Ggra6420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000918_pilon:131606..133150+ (Gracilaria gracilis GNS1m male)
ATGACCACCTTCGAAGGCCCGGACGTCTCCACAGACGGTCTGCAGCCGCA
GCTACCTGCTGGTTCTGCCGGCGAGGCGCCACCGCTCGCTCGATGGCGCA
TCATCCTGTGCGCCGTCGCCATGTGCGGCGTCGCCGTCTCATACTCAGCG
CAGGTCAACCTAGGAACGTCGCAGCTACTTCTGCTCGGACTATCCGAACG
TGCCGTATCACTTGCGTGGCTGGCTGGGCCTCTCTCCGGTCTCATTGTGC
AGCCCATCGTCGGTCATTTCTCTGAccgttgcgcgtcgccgttcggtcgt
cgtcgcccgtttctcgtcgcgggtgccgtGCTTACCGCCGCTGCCTTACT
ACTGTTTGCGAACGCTGCGCTTGTGGCCGAAATGCTTGGCGCGTCCAAGT
CGGCGTTGCCACTTGCTATTTTTGCTTTCTTCCTGCTTGACTTTTCTGTG
CAGGCCGTTCAGGGTCCGTTACGAGCGCTTATTACCGAATTCGTTCCTCG
AGACCAACGTCATGTGGGCAATGCGTTTATTGGTGTGTTTACTGGCCTCG
GTAATCTGTTGGGTAGTGTCTTCACTGCCGTCGGCCTTGCTCGCTATCTA
CCGTACTTTGAACACGACGTGCAGGCTGTCTTTGCACTTGCCGCCTTTAT
TCTGCTCCTTACCGTAGCGATATCAGTGTGTTCTACTAAAGAGGCACCAG
TTTCTCTTCACCAGTACGAATCAGTAGCGCCGAATTCGAACAGTGCTTCC
GAGAACGGTGCAATTGATGACTCGCACGATTCATCTCAAACTCCTGGCGG
TTCATTTCTGTACGCTTTACGCAATTTGCCGCAACCGTACTGGCACGTGT
TCACTATTCAACTATGCACGTGGTGTGGTTTCTTCGCGCTCTTTGTCTAT
GTCAATGCATGGGTTGGGAAGAATATCTATCTGGGTGATGGCACTGCAGA
GGCGGACAGCCAACCAAGAGAAACTTTTGAGGAGGGAGTCCGTCTGGGCG
GTAAGGGAAATGCACTCACTGCTGCCGTCACCCTAGTCTACTCCCTTGCA
CTACCGACACTGATGCGCCGTTTCGGCAGTATGCCTTTATATGTTGCTAG
CCAAATTGTGGAGGCTGCCGTTCTAATGGTTGCGCCCCTTATAAGAGGAA
CACCTGGCCAGCAGAGGCCGTCACAGGCGCTCAAGGCAATCACGGTGACG
GACATTGGGCTGTTTGGCATAGTTTGGGGCACTACGATGGGTGTCCCATG
GACGCTAATCGGAAATGCTCTAGAGTCGAAACCATGGTATCGAGATCGTG
TGGGTCTGTTTCAGATGATTTTCAATGCTAGTCAAAGTGGGCCACAGCTT
ATTGTCGCAGTCATCGCCCCGCTGATCCTCACTTTGTTCAAAGATGACCC
TTCTGCCGTCATGTTTTTCGGCGGTGTTTTGGCACTTGTGGGCGCAGTGC
TTGTTGTTGTACTTCGAGTTGGGAAACCCGCTACATTCAATGAGACCTCG
AAAGTACTTCTACCCGTTCATGGTTTTGGTGAGCGGGAAAGTTAA

Coding sequence (CDS) from alignment at tig00000918_pilon:131606..133150+

>Ggra6420.t1 ID=Ggra6420.t1|Name=Ggra6420.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1545bp|location=Sequence derived from alignment at tig00000918_pilon:131606..133150+ (Gracilaria gracilis GNS1m male)
ATGACCACCTTCGAAGGCCCGGACGTCTCCACAGACGGTCTGCAGCCGCA
GCTACCTGCTGGTTCTGCCGGCGAGGCGCCACCGCTCGCTCGATGGCGCA
TCATCCTGTGCGCCGTCGCCATGTGCGGCGTCGCCGTCTCATACTCAGCG
CAGGTCAACCTAGGAACGTCGCAGCTACTTCTGCTCGGACTATCCGAACG
TGCCGTATCACTTGCGTGGCTGGCTGGGCCTCTCTCCGGTCTCATTGTGC
AGCCCATCGTCGGTCATTTCTCTGAccgttgcgcgtcgccgttcggtcgt
cgtcgcccgtttctcgtcgcgggtgccgtGCTTACCGCCGCTGCCTTACT
ACTGTTTGCGAACGCTGCGCTTGTGGCCGAAATGCTTGGCGCGTCCAAGT
CGGCGTTGCCACTTGCTATTTTTGCTTTCTTCCTGCTTGACTTTTCTGTG
CAGGCCGTTCAGGGTCCGTTACGAGCGCTTATTACCGAATTCGTTCCTCG
AGACCAACGTCATGTGGGCAATGCGTTTATTGGTGTGTTTACTGGCCTCG
GTAATCTGTTGGGTAGTGTCTTCACTGCCGTCGGCCTTGCTCGCTATCTA
CCGTACTTTGAACACGACGTGCAGGCTGTCTTTGCACTTGCCGCCTTTAT
TCTGCTCCTTACCGTAGCGATATCAGTGTGTTCTACTAAAGAGGCACCAG
TTTCTCTTCACCAGTACGAATCAGTAGCGCCGAATTCGAACAGTGCTTCC
GAGAACGGTGCAATTGATGACTCGCACGATTCATCTCAAACTCCTGGCGG
TTCATTTCTGTACGCTTTACGCAATTTGCCGCAACCGTACTGGCACGTGT
TCACTATTCAACTATGCACGTGGTGTGGTTTCTTCGCGCTCTTTGTCTAT
GTCAATGCATGGGTTGGGAAGAATATCTATCTGGGTGATGGCACTGCAGA
GGCGGACAGCCAACCAAGAGAAACTTTTGAGGAGGGAGTCCGTCTGGGCG
GTAAGGGAAATGCACTCACTGCTGCCGTCACCCTAGTCTACTCCCTTGCA
CTACCGACACTGATGCGCCGTTTCGGCAGTATGCCTTTATATGTTGCTAG
CCAAATTGTGGAGGCTGCCGTTCTAATGGTTGCGCCCCTTATAAGAGGAA
CACCTGGCCAGCAGAGGCCGTCACAGGCGCTCAAGGCAATCACGGTGACG
GACATTGGGCTGTTTGGCATAGTTTGGGGCACTACGATGGGTGTCCCATG
GACGCTAATCGGAAATGCTCTAGAGTCGAAACCATGGTATCGAGATCGTG
TGGGTCTGTTTCAGATGATTTTCAATGCTAGTCAAAGTGGGCCACAGCTT
ATTGTCGCAGTCATCGCCCCGCTGATCCTCACTTTGTTCAAAGATGACCC
TTCTGCCGTCATGTTTTTCGGCGGTGTTTTGGCACTTGTGGGCGCAGTGC
TTGTTGTTGTACTTCGAGTTGGGAAACCCGCTACATTCAATGAGACCTCG
AAAGTACTTCTACCCGTTCATGGTTTTGGTGAGCGGGAAAGTTAA