Ggra6413.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6413.t1
Unique NameGgra6413.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:113286..113870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G639
Preferred nameRPS10
PFAMsCH,Plectin,S10_plectin
Max annot lvl2759|Eukaryota
KEGG koko:K02947,ko:K09422,ko:K10388,ko:K11131
KEGG Pathwayko03008,ko03010,map03008,map03010
KEGG ModuleM00177,M00425
GOsGO:0000028,GO:0000049,GO:0000184,GO:0000956,GO:0001763,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005856,GO:0005886,GO:0005903,GO:0005912,GO:0005924,GO:0005925,GO:0006139,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007044,GO:0007275,GO:0007568,GO:0007584,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008307,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009605,GO:0009653,GO:0009888,GO:0009892,GO:0009925,GO:0009933,GO:0009987,GO:0009991,GO:0010014,GO:0010016,GO:0010223,GO:0010252,GO:0010259,GO:0010346,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016323,GO:0016324,GO:0016528,GO:0019222,GO:0019439,GO:0019538,GO:0022603,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030016,GO:0030054,GO:0030055,GO:0030056,GO:0030312,GO:0030506,GO:0031503,GO:0031581,GO:0031667,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034329,GO:0034330,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042383,GO:0042592,GO:0042788,GO:0042886,GO:0043034,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044459,GO:0044464,GO:0045047,GO:0045111,GO:0045177,GO:0045178,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0047485,GO:0048367,GO:0048471,GO:0048507,GO:0048519,GO:0048532,GO:0048646,GO:0048731,GO:0048831,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050896,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051641,GO:0051649,GO:0060255,GO:0060688,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070161,GO:0070727,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090506,GO:0097064,GO:0097159,GO:0098590,GO:0098862,GO:0099080,GO:0099081,GO:0099512,GO:1900618,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1905393,GO:1905428,GO:1990904,GO:2000026,GO:2000032
Evalue2.37e-43
EggNOG OGsCOG5045@1|root,KOG3344@2759|Eukaryota
Descriptionribosomal small subunit assembly
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03000,ko03009,ko03011,ko03032,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6413Ggra6413Gracilaria gracilis GNS1m malegenetig00000918_pilon 113286..113870 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6413.t1.stop1Ggra6413.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 113286..113288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6413.t1.CDS1Ggra6413.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 113286..113870 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6413.t1.exon1Ggra6413.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 113286..113870 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6413.t1.start1Ggra6413.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 113868..113870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6413.t1Ggra6413.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 113286..113870 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6413.t1 ID=Ggra6413.t1|Name=Ggra6413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=195bp
MRVRRGRRRRARSSEEARPRYDDAVARSEQLRSSIRFHRAAPPFVTMLMP
KKNRVAIYSQLFKDGVCVVKKDPMLKEHLEIKDVPNLHVMQTMKSLRSRE
YVRETFSWQYYYYYLTDEGIEYLRSYLNLPSTVKPTTLNPPPRQPARSAL
GGRGDRPRRSYGDGGDKKMGPGGDFRPSYREGGGFGRGGPIRSD*
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spliced messenger RNA

>Ggra6413.t1 ID=Ggra6413.t1|Name=Ggra6413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000918_pilon:113286..113870- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTGCGTCGCGGTCGTCGACGGCGCGCACGCAGCAGCGAAGAGGC
CCGCCCGCGATACGACGACGCCGTCGCGCGCTCGGAACAGCTTCGTAGTT
CGATCCGGTTCCATCGCGCCGCGCCACCGTTCGTCACCATGTTGATGCCC
AAGAAGAACCGCGTTGCAATCTACTCGCAGCTGTTCAAGGATGGTGTATG
CGTCGTGAAGAAGGATCCGATGCTCAAGGAGCATCTGGAAATCAAGGATG
TGCCCAACCTTCACGTCATGCAGACCATGAAGTCACTCAGGTCGCGCGAG
TACGTGCGCGAAACCTTCTCATGGCAGTATTATTACTATTACCTTACGGA
TGAAGGCATTGAGTACTTGCGTTCCTACTTGAATCTGCCGAGTACCGTCA
AGCCCACTACGCTCAACCCGCCGCCGCGTCAGCCGGCGCGATCCGCGCTG
GGTGGACGTGGTGATCGCCCGCGAAGGAGCTATGGAGATGGTGGAGACAA
GAAGATGGGACCTGGTGGTGACTTCCGCCCGTCCTACAGAGAAGGCGGCG
GCTTTGGTCGTGGTGGACCAATTCGCTCCGATTAA
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protein sequence of Ggra6413.t1

>Ggra6413.t1 ID=Ggra6413.t1|Name=Ggra6413.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=195bp
MRVRRGRRRRARSSEEARPRYDDAVARSEQLRSSIRFHRAAPPFVTMLMP
KKNRVAIYSQLFKDGVCVVKKDPMLKEHLEIKDVPNLHVMQTMKSLRSRE
YVRETFSWQYYYYYLTDEGIEYLRSYLNLPSTVKPTTLNPPPRQPARSAL
GGRGDRPRRSYGDGGDKKMGPGGDFRPSYREGGGFGRGGPIRSD*
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mRNA from alignment at tig00000918_pilon:113286..113870-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6413.t1 ID=Ggra6413.t1|Name=Ggra6413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000918_pilon:113286..113870- (Gracilaria gracilis GNS1m male)
ATGCGCGTGCGTCGCGGTCGTCGACGGCGCGCACGCAGCAGCGAAGAGGC
CCGCCCGCGATACGACGACGCCGTCGCGCGCTCGGAACAGCTTCGTAGTT
CGATCCGGTTCCATCGCGCCGCGCCACCGTTCGTCACCATGTTGATGCCC
AAGAAGAACCGCGTTGCAATCTACTCGCAGCTGTTCAAGGATGGTGTATG
CGTCGTGAAGAAGGATCCGATGCTCAAGGAGCATCTGGAAATCAAGGATG
TGCCCAACCTTCACGTCATGCAGACCATGAAGTCACTCAGGTCGCGCGAG
TACGTGCGCGAAACCTTCTCATGGCAGTATTATTACTATTACCTTACGGA
TGAAGGCATTGAGTACTTGCGTTCCTACTTGAATCTGCCGAGTACCGTCA
AGCCCACTACGCTCAACCCGCCGCCGCGTCAGCCGGCGCGATCCGCGCTG
GGTGGACGTGGTGATCGCCCGCGAAGGAGCTATGGAGATGGTGGAGACAA
GAAGATGGGACCTGGTGGTGACTTCCGCCCGTCCTACAGAGAAGGCGGCG
GCTTTGGTCGTGGTGGACCAATTCGCTCCGATTAA
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Coding sequence (CDS) from alignment at tig00000918_pilon:113286..113870-

>Ggra6413.t1 ID=Ggra6413.t1|Name=Ggra6413.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00000918_pilon:113286..113870- (Gracilaria gracilis GNS1m male)
ATGCGCGTGCGTCGCGGTCGTCGACGGCGCGCACGCAGCAGCGAAGAGGC
CCGCCCGCGATACGACGACGCCGTCGCGCGCTCGGAACAGCTTCGTAGTT
CGATCCGGTTCCATCGCGCCGCGCCACCGTTCGTCACCATGTTGATGCCC
AAGAAGAACCGCGTTGCAATCTACTCGCAGCTGTTCAAGGATGGTGTATG
CGTCGTGAAGAAGGATCCGATGCTCAAGGAGCATCTGGAAATCAAGGATG
TGCCCAACCTTCACGTCATGCAGACCATGAAGTCACTCAGGTCGCGCGAG
TACGTGCGCGAAACCTTCTCATGGCAGTATTATTACTATTACCTTACGGA
TGAAGGCATTGAGTACTTGCGTTCCTACTTGAATCTGCCGAGTACCGTCA
AGCCCACTACGCTCAACCCGCCGCCGCGTCAGCCGGCGCGATCCGCGCTG
GGTGGACGTGGTGATCGCCCGCGAAGGAGCTATGGAGATGGTGGAGACAA
GAAGATGGGACCTGGTGGTGACTTCCGCCCGTCCTACAGAGAAGGCGGCG
GCTTTGGTCGTGGTGGACCAATTCGCTCCGATTAA
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