Ggra6404.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6404.t1
Unique NameGgra6404.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:82598..83536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6404Ggra6404Gracilaria gracilis GNS1m malegenetig00000918_pilon 82598..83536 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6404.t1.stop1Ggra6404.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 82598..82600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6404.t1.CDS1Ggra6404.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 82598..83536 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6404.t1.exon1Ggra6404.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 82598..83536 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6404.t1.start1Ggra6404.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 83534..83536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6404.t1Ggra6404.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 82598..83536 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6404.t1 ID=Ggra6404.t1|Name=Ggra6404.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=313bp
MVHPSSSRSDVTSEQLGNPLVRTFIRLLMLFGIVLPLAMYCTHHIQRMRL
EEPLQQLRAFARREAANNKLNDIEDLTVDGMKLYAQATCVKGPTITHVRN
ALSAQLRQIPQQAREDIIESAVVEGMDTVSTRQDTSADPGESGTAFSYLA
YWNTKFNGNQVLVSDRYSTCIMAAGVDVKIGEDLAGYEESSRKVRIGTRP
CECGMLWCVGRCPEYETVTTKRPVFKRHRLTLRDQGKLHRWMVKQAVKRA
ESLVLSREQLDSNSGISYSIEDGMPSASWKAPDEDYFSGDDNFADVSKSR
PNPDQKHPKQDL*
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spliced messenger RNA

>Ggra6404.t1 ID=Ggra6404.t1|Name=Ggra6404.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000918_pilon:82598..83536- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACATCCCTCCTCGTCCAGGAGCGATGTGACATCCGAACAACTTGG
TAATCCACTGGTTCGGACGTTCATAAGATTGTTAATGCTCTTCGGGATTG
TCCTTCCGCTAGCTATGTATTGCACACATCATATTCAAAGAATGCGATTG
GAAGAGCCTTTGCAACAACTACGAGCGTTTGCTCGGAGAGAAGCTGCTAA
CAACAAGCTTAACGACATTGAAGATCTCACTGTCGATGGAATGAAGCTCT
ATGCGCAGGCCACATGCGTAAAGGGTCCCACCATCACACACGTTAGAAAT
GCCCTTAGCGCTCAGTTGCGACAAATACCACAGCAAGCTCGTGAAGACAT
CATCGAAAGCGCAGTTGTTGAAGGAATGGACACCGTCAGTACACGGCAGG
ATACCTCAGCGGATCCGGGAGAGTCTGGAACTGCTTTCAGCTATCTAGCA
TATTGGAACACCAAATTCAACGGTAACCAAGTTTTAGTTTCGGATAGATA
CTCAACATGTATCATGGCAGCAGGCGTCGACGTGAAGATAGGAGAGGACC
TCGCAGGATATGAAGAGAGCTCTCGCAAAGTTAGAATCGGTACACGGCCG
TGCGAGTGCGGTATGCTCTGGTGTGTGGGTCGCTGTCCAGAGTATGAAAC
GGTCACGACGAAGAGACCAGTGTTCAAGCGCCACCGCCTTACGCTAAGGG
ACCAGGGCAAACTTCATCGCTGGATGGTGAAGCAAGCCGTCAAACGTGCG
GAATCGCTCGTACTATCCCGAGAACAGCTTGATAGCAACTCTGGCATTTC
GTACAGCATCGAGGATGGAATGCCCTCCGCCTCATGGAAAGCACCGGATG
AAGATTATTTTAGTGGAGATGACAATTTCGCTGACGTATCGAAGAGTCGT
CCCAACCCAGATCAAAAGCATCCCAAACAGGATCTGTGA
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protein sequence of Ggra6404.t1

>Ggra6404.t1 ID=Ggra6404.t1|Name=Ggra6404.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MVHPSSSRSDVTSEQLGNPLVRTFIRLLMLFGIVLPLAMYCTHHIQRMRL
EEPLQQLRAFARREAANNKLNDIEDLTVDGMKLYAQATCVKGPTITHVRN
ALSAQLRQIPQQAREDIIESAVVEGMDTVSTRQDTSADPGESGTAFSYLA
YWNTKFNGNQVLVSDRYSTCIMAAGVDVKIGEDLAGYEESSRKVRIGTRP
CECGMLWCVGRCPEYETVTTKRPVFKRHRLTLRDQGKLHRWMVKQAVKRA
ESLVLSREQLDSNSGISYSIEDGMPSASWKAPDEDYFSGDDNFADVSKSR
PNPDQKHPKQDL*
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mRNA from alignment at tig00000918_pilon:82598..83536-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6404.t1 ID=Ggra6404.t1|Name=Ggra6404.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000918_pilon:82598..83536- (Gracilaria gracilis GNS1m male)
ATGGTACATCCCTCCTCGTCCAGGAGCGATGTGACATCCGAACAACTTGG
TAATCCACTGGTTCGGACGTTCATAAGATTGTTAATGCTCTTCGGGATTG
TCCTTCCGCTAGCTATGTATTGCACACATCATATTCAAAGAATGCGATTG
GAAGAGCCTTTGCAACAACTACGAGCGTTTGCTCGGAGAGAAGCTGCTAA
CAACAAGCTTAACGACATTGAAGATCTCACTGTCGATGGAATGAAGCTCT
ATGCGCAGGCCACATGCGTAAAGGGTCCCACCATCACACACGTTAGAAAT
GCCCTTAGCGCTCAGTTGCGACAAATACCACAGCAAGCTCGTGAAGACAT
CATCGAAAGCGCAGTTGTTGAAGGAATGGACACCGTCAGTACACGGCAGG
ATACCTCAGCGGATCCGGGAGAGTCTGGAACTGCTTTCAGCTATCTAGCA
TATTGGAACACCAAATTCAACGGTAACCAAGTTTTAGTTTCGGATAGATA
CTCAACATGTATCATGGCAGCAGGCGTCGACGTGAAGATAGGAGAGGACC
TCGCAGGATATGAAGAGAGCTCTCGCAAAGTTAGAATCGGTACACGGCCG
TGCGAGTGCGGTATGCTCTGGTGTGTGGGTCGCTGTCCAGAGTATGAAAC
GGTCACGACGAAGAGACCAGTGTTCAAGCGCCACCGCCTTACGCTAAGGG
ACCAGGGCAAACTTCATCGCTGGATGGTGAAGCAAGCCGTCAAACGTGCG
GAATCGCTCGTACTATCCCGAGAACAGCTTGATAGCAACTCTGGCATTTC
GTACAGCATCGAGGATGGAATGCCCTCCGCCTCATGGAAAGCACCGGATG
AAGATTATTTTAGTGGAGATGACAATTTCGCTGACGTATCGAAGAGTCGT
CCCAACCCAGATCAAAAGCATCCCAAACAGGATCTGTGA
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Coding sequence (CDS) from alignment at tig00000918_pilon:82598..83536-

>Ggra6404.t1 ID=Ggra6404.t1|Name=Ggra6404.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000918_pilon:82598..83536- (Gracilaria gracilis GNS1m male)
ATGGTACATCCCTCCTCGTCCAGGAGCGATGTGACATCCGAACAACTTGG
TAATCCACTGGTTCGGACGTTCATAAGATTGTTAATGCTCTTCGGGATTG
TCCTTCCGCTAGCTATGTATTGCACACATCATATTCAAAGAATGCGATTG
GAAGAGCCTTTGCAACAACTACGAGCGTTTGCTCGGAGAGAAGCTGCTAA
CAACAAGCTTAACGACATTGAAGATCTCACTGTCGATGGAATGAAGCTCT
ATGCGCAGGCCACATGCGTAAAGGGTCCCACCATCACACACGTTAGAAAT
GCCCTTAGCGCTCAGTTGCGACAAATACCACAGCAAGCTCGTGAAGACAT
CATCGAAAGCGCAGTTGTTGAAGGAATGGACACCGTCAGTACACGGCAGG
ATACCTCAGCGGATCCGGGAGAGTCTGGAACTGCTTTCAGCTATCTAGCA
TATTGGAACACCAAATTCAACGGTAACCAAGTTTTAGTTTCGGATAGATA
CTCAACATGTATCATGGCAGCAGGCGTCGACGTGAAGATAGGAGAGGACC
TCGCAGGATATGAAGAGAGCTCTCGCAAAGTTAGAATCGGTACACGGCCG
TGCGAGTGCGGTATGCTCTGGTGTGTGGGTCGCTGTCCAGAGTATGAAAC
GGTCACGACGAAGAGACCAGTGTTCAAGCGCCACCGCCTTACGCTAAGGG
ACCAGGGCAAACTTCATCGCTGGATGGTGAAGCAAGCCGTCAAACGTGCG
GAATCGCTCGTACTATCCCGAGAACAGCTTGATAGCAACTCTGGCATTTC
GTACAGCATCGAGGATGGAATGCCCTCCGCCTCATGGAAAGCACCGGATG
AAGATTATTTTAGTGGAGATGACAATTTCGCTGACGTATCGAAGAGTCGT
CCCAACCCAGATCAAAAGCATCCCAAACAGGATCTGTGA
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