Ggra6340.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6340.t1
Unique NameGgra6340.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:270466..270867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709050.1
Preferred nameACACB
PFAMsACC_central,Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2,Carboxyl_trans
Max annot lvl2759|Eukaryota
KEGG rclassRC00040,RC00253,RC00367
KEGG koko:K01946,ko:K11262
KEGG ReactionR00742,R04385,R04386
KEGG Pathwayko00061,ko00254,ko00620,ko00640,ko01100,ko01110,ko01212,ko04152,ko04910,ko04920,ko04922,ko04931,map00061,map00254,map00620,map00640,map01100,map01110,map01212,map04152,map04910,map04920,map04922,map04931
KEGG ModuleM00082
GOsGO:0000166,GO:0000902,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001101,GO:0001650,GO:0001676,GO:0001894,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0003989,GO:0004075,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0005975,GO:0005976,GO:0005977,GO:0006073,GO:0006082,GO:0006084,GO:0006091,GO:0006109,GO:0006112,GO:0006139,GO:0006163,GO:0006164,GO:0006355,GO:0006606,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006638,GO:0006639,GO:0006641,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006853,GO:0006869,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006998,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009374,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010033,GO:0010256,GO:0010468,GO:0010556,GO:0010557,GO:0010565,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010675,GO:0010876,GO:0010883,GO:0010884,GO:0010906,GO:0012505,GO:0014070,GO:0015031,GO:0015629,GO:0015711,GO:0015718,GO:0015833,GO:0015849,GO:0015908,GO:0015909,GO:0015980,GO:0016020,GO:0016043,GO:0016053,GO:0016421,GO:0016874,GO:0016879,GO:0016885,GO:0017038,GO:0017076,GO:0018130,GO:0019216,GO:0019217,GO:0019218,GO:0019219,GO:0019222,GO:0019432,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0019842,GO:0019867,GO:0019899,GO:0019900,GO:0019904,GO:0022607,GO:0030554,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031406,GO:0031667,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0031998,GO:0031999,GO:0032365,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032810,GO:0032870,GO:0032879,GO:0032989,GO:0033036,GO:0033218,GO:0033293,GO:0033365,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034220,GO:0034285,GO:0034504,GO:0034613,GO:0034641,GO:0034654,GO:0034694,GO:0034695,GO:0035257,GO:0035337,GO:0035383,GO:0035384,GO:0035639,GO:0036094,GO:0040008,GO:0040029,GO:0042175,GO:0042221,GO:0042493,GO:0042592,GO:0042759,GO:0042802,GO:0042886,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043565,GO:0043603,GO:0043604,GO:0043933,GO:0044042,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045017,GO:0045184,GO:0045540,GO:0045833,GO:0045893,GO:0045922,GO:0045927,GO:0045935,GO:0046320,GO:0046322,GO:0046390,GO:0046394,GO:0046460,GO:0046463,GO:0046483,GO:0046486,GO:0046620,GO:0046622,GO:0046890,GO:0046907,GO:0046942,GO:0046949,GO:0046966,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048638,GO:0048639,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050662,GO:0050692,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050810,GO:0050896,GO:0050994,GO:0050995,GO:0051094,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051427,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0055086,GO:0055088,GO:0055114,GO:0060249,GO:0060255,GO:0060420,GO:0060421,GO:0061024,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070542,GO:0070727,GO:0070887,GO:0071229,GO:0071310,GO:0071322,GO:0071324,GO:0071329,GO:0071379,GO:0071380,GO:0071396,GO:0071398,GO:0071495,GO:0071616,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072330,GO:0072521,GO:0072522,GO:0072594,GO:0080090,GO:0090181,GO:0090407,GO:0097009,GO:0097066,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0098588,GO:0098656,GO:0098805,GO:0098827,GO:0106118,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1901654,GO:1901655,GO:1901681,GO:1901700,GO:1901701,GO:1902001,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:1903825,GO:1905039,GO:1905952,GO:1905954,GO:1990542,GO:1990837,GO:2000026,GO:2000112,GO:2001141,GO:2001293,GO:2001295
Evalue5.56e-50
EggNOG OGsCOG0439@1|root,KOG0368@2759|Eukaryota
EC2.1.3.15,6.3.4.14,6.4.1.2
Descriptionacetyl-CoA carboxylase
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6340Ggra6340Gracilaria gracilis GNS1m malegenetig00000096_pilon 270466..270867 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6340.t1.start1Ggra6340.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 270466..270468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6340.t1.CDS1Ggra6340.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 270466..270867 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6340.t1.exon1Ggra6340.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 270466..270867 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6340.t1.stop1Ggra6340.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 270865..270867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6340.t1Ggra6340.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 270466..270867 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6340.t1 ID=Ggra6340.t1|Name=Ggra6340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=134bp
MTQSADLCESQPVITSLQKYVKRLAGKRVISKILMANNGIAAVKAIRSIR
RWSYETFGNERTIEFVSMATPEDVAANAEYMPMADMWTSVPSGSNNHNFA
NVELICDLANRFDCDTVWAGWGHASENPNLPAR*
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spliced messenger RNA

>Ggra6340.t1 ID=Ggra6340.t1|Name=Ggra6340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00000096_pilon:270466..270867+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCAGTCTGCCGACCTTTGCGAGTCGCAGCCCGTGATAACCTCTCT
TCAAAAGTATGTCAAGCGTCTGGCAGGCAAGCGGGTCATCAGCAAGATCC
TTATGGCCAACAATGGAATTGCCGCCGTCAAGGCAATTCGTTCCATCCGA
AGATGGTCGTACGAGACTTTTGGAAATGAGCGCACCATCGAGTTTGTCTC
AATGGCTACCCCAGAGGATGTAGCCGCAAACGCTGAGTATATGCCAATGG
CCGACATGTGGACCTCCGTGCCAAGCGGGTCTAATAACCACAACTTCGCT
AACGTCGAGCTTATTTGCGATCTTGCAAATCGTTTCGACTGCGATACCGT
CTGGGCGGGATGGGGGCATGCCTCCGAAAACCCCAACTTGCCGGCGAGGT
AA
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protein sequence of Ggra6340.t1

>Ggra6340.t1 ID=Ggra6340.t1|Name=Ggra6340.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=134bp
MTQSADLCESQPVITSLQKYVKRLAGKRVISKILMANNGIAAVKAIRSIR
RWSYETFGNERTIEFVSMATPEDVAANAEYMPMADMWTSVPSGSNNHNFA
NVELICDLANRFDCDTVWAGWGHASENPNLPAR*
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mRNA from alignment at tig00000096_pilon:270466..270867+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6340.t1 ID=Ggra6340.t1|Name=Ggra6340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00000096_pilon:270466..270867+ (Gracilaria gracilis GNS1m male)
ATGACGCAGTCTGCCGACCTTTGCGAGTCGCAGCCCGTGATAACCTCTCT
TCAAAAGTATGTCAAGCGTCTGGCAGGCAAGCGGGTCATCAGCAAGATCC
TTATGGCCAACAATGGAATTGCCGCCGTCAAGGCAATTCGTTCCATCCGA
AGATGGTCGTACGAGACTTTTGGAAATGAGCGCACCATCGAGTTTGTCTC
AATGGCTACCCCAGAGGATGTAGCCGCAAACGCTGAGTATATGCCAATGG
CCGACATGTGGACCTCCGTGCCAAGCGGGTCTAATAACCACAACTTCGCT
AACGTCGAGCTTATTTGCGATCTTGCAAATCGTTTCGACTGCGATACCGT
CTGGGCGGGATGGGGGCATGCCTCCGAAAACCCCAACTTGCCGGCGAGGT
AA
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Coding sequence (CDS) from alignment at tig00000096_pilon:270466..270867+

>Ggra6340.t1 ID=Ggra6340.t1|Name=Ggra6340.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=402bp|location=Sequence derived from alignment at tig00000096_pilon:270466..270867+ (Gracilaria gracilis GNS1m male)
ATGACGCAGTCTGCCGACCTTTGCGAGTCGCAGCCCGTGATAACCTCTCT
TCAAAAGTATGTCAAGCGTCTGGCAGGCAAGCGGGTCATCAGCAAGATCC
TTATGGCCAACAATGGAATTGCCGCCGTCAAGGCAATTCGTTCCATCCGA
AGATGGTCGTACGAGACTTTTGGAAATGAGCGCACCATCGAGTTTGTCTC
AATGGCTACCCCAGAGGATGTAGCCGCAAACGCTGAGTATATGCCAATGG
CCGACATGTGGACCTCCGTGCCAAGCGGGTCTAATAACCACAACTTCGCT
AACGTCGAGCTTATTTGCGATCTTGCAAATCGTTTCGACTGCGATACCGT
CTGGGCGGGATGGGGGCATGCCTCCGAAAACCCCAACTTGCCGGCGAGGT
AA
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