Ggra6313.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6313.t1
Unique NameGgra6313.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:43870..44748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1112216.JH594425_gene2625
PFAMsPyridoxal_deC
Max annot lvl2|Bacteria
Evalue1.26e-66
EggNOG OGsCOG0076@1|root,COG0076@2|Bacteria
Descriptionglutamate decarboxylase activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6313Ggra6313Gracilaria gracilis GNS1m malegenetig00000096_pilon 43870..44748 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6313.t1.stop1Ggra6313.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 43870..43872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6313.t1.CDS1Ggra6313.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 43870..44748 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6313.t1.exon1Ggra6313.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 43870..44748 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6313.t1.start1Ggra6313.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 44746..44748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6313.t1Ggra6313.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 43870..44748 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6313.t1 ID=Ggra6313.t1|Name=Ggra6313.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=293bp
MKNVRYADAVGIDFHKTGWCTYNCSMFAMKYLNHFRAMMTRLGSAYLQER
TAYNPGLYTLEVSRSASYALAGWATLRYFGMSGFRSVLGGILEIQAYLRE
QLEEERSMVCVNEEDNGFVTLIRVYEPHVNAAEQFERELSEPGALEELKK
NNALQQKVADILWSWFRSGEQIDGLYGAYTSYTSGFRTTDYNDDMSSDAV
VYALKAFPMNVNITTDTIDKLLAVVKKGVQKVLDGETAPPAERLVGPPYD
AHNAAISCGDDPAAEARKQRVHDLVSGVVGSRTYSRLRPKKR*
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spliced messenger RNA

>Ggra6313.t1 ID=Ggra6313.t1|Name=Ggra6313.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000096_pilon:43870..44748- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAACGTGCGCTACGCAGACGCGGTGGGAATCGACTTTCATAAGAC
GGGCTGGTGCACGTACAACTGCTCCATGTTCGCCATGAAATATCTGAACC
ACTTTCGCGCCATGATGACGCGCCTCGGTTCTGCGTATCTACAGGAACGC
ACGGCGTACAACCCCGGGCTGTACACGCTGGAGGTGTCGCGCTCGGCGTC
GTACGCGCTGGCGGGATGGGCCACGCTGAGGTATTTCGGCATGTCTGGTT
TCCGCTCCGTGCTCGGGGGCATTCTGGAGATACAGGCGTATCTGAGAGAA
CAGCTGGAGGAAGAACGTTCGATGGTATGCGTCAACGAAGAGGATAACGG
CTTCGTGACGCTGATCCGCGTGTACGAGCCGCACGTGAACGCGGCGGAAC
AGTTCGAACGCGAGCTAAGCGAGCCCGGCGCGCTGGAGGAGCTCAAGAAG
AACAACGCGCTGCAACAAAAAGTGGCAGACATCCTCTGGAGCTGGTTCCG
CAGCGGCGAGCAAATCGACGGTCTGTACGGCGCGTACACCAGCTACACGT
CGGGCTTTCGTACCACGGACTATAACGACGACATGTCGTCCGACGCGGTG
GTGTACGCGCTCAAGGCGTTCCCCATGAACGTGAACATCACGACGGACAC
GATAGACAAGCTGTTGGCGGTGGTGAAGAAGGGCGTTCAGAAAGTGCTGG
ATGGCGAGACGGCGCCGCCGGCGGAGAGGTTGGTGGGCCCGCCGTACGAC
GCGCATAACGCCGCCATCAGCTGCGGCGACGACCCCGCCGCCGAGGCGCG
CAAGCAGCGCGTGCACGACCTCGTGTCCGGCGTCGTGGGCAGCCGCACCT
ACTCGCGCCTCAGGCCCAAGAAGCGCTAG
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protein sequence of Ggra6313.t1

>Ggra6313.t1 ID=Ggra6313.t1|Name=Ggra6313.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=293bp
MKNVRYADAVGIDFHKTGWCTYNCSMFAMKYLNHFRAMMTRLGSAYLQER
TAYNPGLYTLEVSRSASYALAGWATLRYFGMSGFRSVLGGILEIQAYLRE
QLEEERSMVCVNEEDNGFVTLIRVYEPHVNAAEQFERELSEPGALEELKK
NNALQQKVADILWSWFRSGEQIDGLYGAYTSYTSGFRTTDYNDDMSSDAV
VYALKAFPMNVNITTDTIDKLLAVVKKGVQKVLDGETAPPAERLVGPPYD
AHNAAISCGDDPAAEARKQRVHDLVSGVVGSRTYSRLRPKKR*
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mRNA from alignment at tig00000096_pilon:43870..44748-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6313.t1 ID=Ggra6313.t1|Name=Ggra6313.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000096_pilon:43870..44748- (Gracilaria gracilis GNS1m male)
ATGAAAAACGTGCGCTACGCAGACGCGGTGGGAATCGACTTTCATAAGAC
GGGCTGGTGCACGTACAACTGCTCCATGTTCGCCATGAAATATCTGAACC
ACTTTCGCGCCATGATGACGCGCCTCGGTTCTGCGTATCTACAGGAACGC
ACGGCGTACAACCCCGGGCTGTACACGCTGGAGGTGTCGCGCTCGGCGTC
GTACGCGCTGGCGGGATGGGCCACGCTGAGGTATTTCGGCATGTCTGGTT
TCCGCTCCGTGCTCGGGGGCATTCTGGAGATACAGGCGTATCTGAGAGAA
CAGCTGGAGGAAGAACGTTCGATGGTATGCGTCAACGAAGAGGATAACGG
CTTCGTGACGCTGATCCGCGTGTACGAGCCGCACGTGAACGCGGCGGAAC
AGTTCGAACGCGAGCTAAGCGAGCCCGGCGCGCTGGAGGAGCTCAAGAAG
AACAACGCGCTGCAACAAAAAGTGGCAGACATCCTCTGGAGCTGGTTCCG
CAGCGGCGAGCAAATCGACGGTCTGTACGGCGCGTACACCAGCTACACGT
CGGGCTTTCGTACCACGGACTATAACGACGACATGTCGTCCGACGCGGTG
GTGTACGCGCTCAAGGCGTTCCCCATGAACGTGAACATCACGACGGACAC
GATAGACAAGCTGTTGGCGGTGGTGAAGAAGGGCGTTCAGAAAGTGCTGG
ATGGCGAGACGGCGCCGCCGGCGGAGAGGTTGGTGGGCCCGCCGTACGAC
GCGCATAACGCCGCCATCAGCTGCGGCGACGACCCCGCCGCCGAGGCGCG
CAAGCAGCGCGTGCACGACCTCGTGTCCGGCGTCGTGGGCAGCCGCACCT
ACTCGCGCCTCAGGCCCAAGAAGCGCTAG
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Coding sequence (CDS) from alignment at tig00000096_pilon:43870..44748-

>Ggra6313.t1 ID=Ggra6313.t1|Name=Ggra6313.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00000096_pilon:43870..44748- (Gracilaria gracilis GNS1m male)
ATGAAAAACGTGCGCTACGCAGACGCGGTGGGAATCGACTTTCATAAGAC
GGGCTGGTGCACGTACAACTGCTCCATGTTCGCCATGAAATATCTGAACC
ACTTTCGCGCCATGATGACGCGCCTCGGTTCTGCGTATCTACAGGAACGC
ACGGCGTACAACCCCGGGCTGTACACGCTGGAGGTGTCGCGCTCGGCGTC
GTACGCGCTGGCGGGATGGGCCACGCTGAGGTATTTCGGCATGTCTGGTT
TCCGCTCCGTGCTCGGGGGCATTCTGGAGATACAGGCGTATCTGAGAGAA
CAGCTGGAGGAAGAACGTTCGATGGTATGCGTCAACGAAGAGGATAACGG
CTTCGTGACGCTGATCCGCGTGTACGAGCCGCACGTGAACGCGGCGGAAC
AGTTCGAACGCGAGCTAAGCGAGCCCGGCGCGCTGGAGGAGCTCAAGAAG
AACAACGCGCTGCAACAAAAAGTGGCAGACATCCTCTGGAGCTGGTTCCG
CAGCGGCGAGCAAATCGACGGTCTGTACGGCGCGTACACCAGCTACACGT
CGGGCTTTCGTACCACGGACTATAACGACGACATGTCGTCCGACGCGGTG
GTGTACGCGCTCAAGGCGTTCCCCATGAACGTGAACATCACGACGGACAC
GATAGACAAGCTGTTGGCGGTGGTGAAGAAGGGCGTTCAGAAAGTGCTGG
ATGGCGAGACGGCGCCGCCGGCGGAGAGGTTGGTGGGCCCGCCGTACGAC
GCGCATAACGCCGCCATCAGCTGCGGCGACGACCCCGCCGCCGAGGCGCG
CAAGCAGCGCGTGCACGACCTCGTGTCCGGCGTCGTGGGCAGCCGCACCT
ACTCGCGCCTCAGGCCCAAGAAGCGCTAG
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