Ggra6303.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6303.t1
Unique Name	Ggra6303.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	359

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:500358..501434 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	27923.ML29629a-PA
PFAMs	Ank_2,Ank_4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K21415
Evalue	8.91e-26
EggNOG OGs	COG0666@1\|root,KOG0504@2759\|Eukaryota
Description	protein ubiquitination
COG category	I
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6303	Ggra6303	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 500358..501434 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6303.t1.start1	Ggra6303.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 500358..500360 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6303.t1.CDS1	Ggra6303.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 500358..501434 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6303.t1.exon1	Ggra6303.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 500358..501434 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6303.t1.stop1	Ggra6303.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 501432..501434 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6303.t1	Ggra6303.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 500358..501434 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:500358..501434+
coding sequence from alignment at tig00000879_pilon:500358..501434+

mRNA sequence

>Ggra6303.t1 ID=Ggra6303.t1|Name=Ggra6303.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=359bp
MRRARPTSQPTSQPTSQPTSSATSDVTDEVFQRSFDALCINLSAPLSPAA
WQLVHRALEAAKTDPYGDGDQSPLTGSTFHPMRKAWATGLDARDAVLKHR
ASFSLHRCAWEGDVDHVNRLIRTAREKQRCGHLFALTHLLEQRVSNLRLS
PLHYVCFSARSLTNIPEPMASNFVGVVHALCQAGARVDSRDIAGYTPLSI
ASSFICNPTTLRMARVLVAYGADPNAKTRFGEPIIVSSIIGGNKDAFRTL
LRAGADITKPDRLGVSPRDLSSRRPELQTVIAEVERELAAFPMVCDVCGK
AGVTKFCAACRTVYYCSRECQRDGWRSGHRERCTASSCVSGEKDITSGIM
SDKAVPGL*

spliced messenger RNA

>Ggra6303.t1 ID=Ggra6303.t1|Name=Ggra6303.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000879_pilon:500358..501434+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGTGCTAGACCCACTTCACAGCCCACTTCACAGCCCACTTCACA
GCCCACTTCTTCCGCCACTTCCGACGTCACCGATGAAGTTTTTCAACGTT
CTTTCGATGCGTTATGCATTAATCTGAGCGCGCCGTTGTCACCTGCCGCG
TGGCAACTGGTGCATCGTGCTTTAGAAGCCGCTAAAACTGATCCTTATGG
TGACGGTGACCAGTCACCCCTTACGGGCTCCACCTTTCATCCCATGCGAA
AGGCCTGGGCCACTGGCCTTGATGCCAGGGATGCTGTACTGAAACACCGT
GCGTCATTTAGTCTACATCGCTGCGCTTGGGAAGGCGATGTTGATCATGT
CAATCGTCTCATTCGAACTGCGCGTGAAAAGCAACGTTGTGGACATCTGT
TTGCTTTGACGCACTTGCTCGAACAACGAGTGTCTAATCTCAGGCTTTCT
CCTTTGCACTACGTTTGCTTCAGCGCGCGTTCTCTAACTAATATTCCAGA
ACCAATGGCTTCTAACTTTGTCGGTGTCGTTCACGCCTTGTGCCAAGCTG
GTGCTCGTGTTGACTCCCGTGATATTGCTGGGTATACACCCCTTAGTATT
GCCTCCAGTTTCATATGCAACCCTACGACCTTACGCATGGCTCGGGTGTT
AGTTGCGTACGGCGCCGATCCGAATGCCAAGACAAGGTTCGGCGAACCTA
TTATCGTTTCCAGTATTATCGGTGGCAATAAGGATGCGTTTAGAACACTT
CTTCGTGCTGGTGCAGACATTACCAAACCCGATCGTTTGGGAGTTAGTCC
GCGTGATTTGTCCTCACGAAGACCAGAGCTTCAGACCGTTATTGCCGAAG
TTGAACGCGAACTGGCGGCTTTTCCAATGGTCTGTGACGTTTGCGGAAAG
GCGGGTGTGACCAAGTTTTGTGCCGCCTGTCGAACAGTGTATTATTGCTC
TCGCGAATGTCAGCGCGATGGATGGCGCTCGGGACATAGGGAGAGATGTA
CAGCATCTTCGTGTGTTTCCGGAGAAAAGGACATCACTTCTGGCATCATG
TCCGACAAGGCTGTCCCTGGTTTGTAG

protein sequence of Ggra6303.t1

>Ggra6303.t1 ID=Ggra6303.t1|Name=Ggra6303.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=359bp
MRRARPTSQPTSQPTSQPTSSATSDVTDEVFQRSFDALCINLSAPLSPAA
WQLVHRALEAAKTDPYGDGDQSPLTGSTFHPMRKAWATGLDARDAVLKHR
ASFSLHRCAWEGDVDHVNRLIRTAREKQRCGHLFALTHLLEQRVSNLRLS
PLHYVCFSARSLTNIPEPMASNFVGVVHALCQAGARVDSRDIAGYTPLSI
ASSFICNPTTLRMARVLVAYGADPNAKTRFGEPIIVSSIIGGNKDAFRTL
LRAGADITKPDRLGVSPRDLSSRRPELQTVIAEVERELAAFPMVCDVCGK
AGVTKFCAACRTVYYCSRECQRDGWRSGHRERCTASSCVSGEKDITSGIM
SDKAVPGL*

mRNA from alignment at tig00000879_pilon:500358..501434+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6303.t1 ID=Ggra6303.t1|Name=Ggra6303.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000879_pilon:500358..501434+ (Gracilaria gracilis GNS1m male)
ATGAGGCGTGCTAGACCCACTTCACAGCCCACTTCACAGCCCACTTCACA
GCCCACTTCTTCCGCCACTTCCGACGTCACCGATGAAGTTTTTCAACGTT
CTTTCGATGCGTTATGCATTAATCTGAGCGCGCCGTTGTCACCTGCCGCG
TGGCAACTGGTGCATCGTGCTTTAGAAGCCGCTAAAACTGATCCTTATGG
TGACGGTGACCAGTCACCCCTTACGGGCTCCACCTTTCATCCCATGCGAA
AGGCCTGGGCCACTGGCCTTGATGCCAGGGATGCTGTACTGAAACACCGT
GCGTCATTTAGTCTACATCGCTGCGCTTGGGAAGGCGATGTTGATCATGT
CAATCGTCTCATTCGAACTGCGCGTGAAAAGCAACGTTGTGGACATCTGT
TTGCTTTGACGCACTTGCTCGAACAACGAGTGTCTAATCTCAGGCTTTCT
CCTTTGCACTACGTTTGCTTCAGCGCGCGTTCTCTAACTAATATTCCAGA
ACCAATGGCTTCTAACTTTGTCGGTGTCGTTCACGCCTTGTGCCAAGCTG
GTGCTCGTGTTGACTCCCGTGATATTGCTGGGTATACACCCCTTAGTATT
GCCTCCAGTTTCATATGCAACCCTACGACCTTACGCATGGCTCGGGTGTT
AGTTGCGTACGGCGCCGATCCGAATGCCAAGACAAGGTTCGGCGAACCTA
TTATCGTTTCCAGTATTATCGGTGGCAATAAGGATGCGTTTAGAACACTT
CTTCGTGCTGGTGCAGACATTACCAAACCCGATCGTTTGGGAGTTAGTCC
GCGTGATTTGTCCTCACGAAGACCAGAGCTTCAGACCGTTATTGCCGAAG
TTGAACGCGAACTGGCGGCTTTTCCAATGGTCTGTGACGTTTGCGGAAAG
GCGGGTGTGACCAAGTTTTGTGCCGCCTGTCGAACAGTGTATTATTGCTC
TCGCGAATGTCAGCGCGATGGATGGCGCTCGGGACATAGGGAGAGATGTA
CAGCATCTTCGTGTGTTTCCGGAGAAAAGGACATCACTTCTGGCATCATG
TCCGACAAGGCTGTCCCTGGTTTGTAG

Coding sequence (CDS) from alignment at tig00000879_pilon:500358..501434+

>Ggra6303.t1 ID=Ggra6303.t1|Name=Ggra6303.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000879_pilon:500358..501434+ (Gracilaria gracilis GNS1m male)
ATGAGGCGTGCTAGACCCACTTCACAGCCCACTTCACAGCCCACTTCACA
GCCCACTTCTTCCGCCACTTCCGACGTCACCGATGAAGTTTTTCAACGTT
CTTTCGATGCGTTATGCATTAATCTGAGCGCGCCGTTGTCACCTGCCGCG
TGGCAACTGGTGCATCGTGCTTTAGAAGCCGCTAAAACTGATCCTTATGG
TGACGGTGACCAGTCACCCCTTACGGGCTCCACCTTTCATCCCATGCGAA
AGGCCTGGGCCACTGGCCTTGATGCCAGGGATGCTGTACTGAAACACCGT
GCGTCATTTAGTCTACATCGCTGCGCTTGGGAAGGCGATGTTGATCATGT
CAATCGTCTCATTCGAACTGCGCGTGAAAAGCAACGTTGTGGACATCTGT
TTGCTTTGACGCACTTGCTCGAACAACGAGTGTCTAATCTCAGGCTTTCT
CCTTTGCACTACGTTTGCTTCAGCGCGCGTTCTCTAACTAATATTCCAGA
ACCAATGGCTTCTAACTTTGTCGGTGTCGTTCACGCCTTGTGCCAAGCTG
GTGCTCGTGTTGACTCCCGTGATATTGCTGGGTATACACCCCTTAGTATT
GCCTCCAGTTTCATATGCAACCCTACGACCTTACGCATGGCTCGGGTGTT
AGTTGCGTACGGCGCCGATCCGAATGCCAAGACAAGGTTCGGCGAACCTA
TTATCGTTTCCAGTATTATCGGTGGCAATAAGGATGCGTTTAGAACACTT
CTTCGTGCTGGTGCAGACATTACCAAACCCGATCGTTTGGGAGTTAGTCC
GCGTGATTTGTCCTCACGAAGACCAGAGCTTCAGACCGTTATTGCCGAAG
TTGAACGCGAACTGGCGGCTTTTCCAATGGTCTGTGACGTTTGCGGAAAG
GCGGGTGTGACCAAGTTTTGTGCCGCCTGTCGAACAGTGTATTATTGCTC
TCGCGAATGTCAGCGCGATGGATGGCGCTCGGGACATAGGGAGAGATGTA
CAGCATCTTCGTGTGTTTCCGGAGAAAAGGACATCACTTCTGGCATCATG
TCCGACAAGGCTGTCCCTGGTTTGTAG