Ggra6295.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6295.t1
Unique Name	Ggra6295.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	609

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:470012..471838 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6295	Ggra6295	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 470012..471838 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6295.t1.start1	Ggra6295.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 470012..470014 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6295.t1.CDS1	Ggra6295.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 470012..471838 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6295.t1.exon1	Ggra6295.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 470012..471838 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6295.t1.stop1	Ggra6295.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 471836..471838 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6295.t1	Ggra6295.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 470012..471838 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:470012..471838+
coding sequence from alignment at tig00000879_pilon:470012..471838+

mRNA sequence

>Ggra6295.t1 ID=Ggra6295.t1|Name=Ggra6295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp
MAPRKPQQPTSGVVRRVVRTVTTEEVIEHIVEPSSSTPSRKTAKPKTPIK
KKTAKASSSASSSRSTTKPKAKPSVKKAEPKTIAGKKAEPKTIAVKKTKP
KTTTVKKAEPKTTTVKKAVPKTTTVKKTEPKTTTVKKAEPKTTTVKKAPA
SASKTKQTAKSRPKSNSATSATKAKAPTVKRTGTKTVISSTQKKTAAKGT
SSKAATGIKETKASATKAKPNIAKATGVKKEKKSLSVQPSIKKKTVSKPA
RKNVKKSTAAKSEPTAAQLNEAQKLHAEMRAKMFNEALQVARMEARAEFQ
RLASKGQDVTNSAVKTPKAEPLSFVSRGAPGPSSFGLEQRSGANPLFVTP
GVRARRVKQTARRTVSTPIPSSSRSAAQSVARSNHGTRAVNQDEVWILSH
ETGYVPDGFHSAELPERKEVGTFTSRADAVKEGKRLVGNDVGYSWAEVCE
AGDLEVEEDSSKKWEICWSPPDSQFSRVVALCVKLSEGTWLVETESGYYP
DRFHSYMAPTKKTLGPYKTRQMAVNMGKNQVGSVYGIDWDEVASGGDLEI
VVDNATRWEVCWSPPDSEYSRVVVKLVTAAPAQSGGNSMPARGEESDNDD
YEGFPVMF*

spliced messenger RNA

>Ggra6295.t1 ID=Ggra6295.t1|Name=Ggra6295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1827bp|location=Sequence derived from alignment at tig00000879_pilon:470012..471838+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCACGAAAGCCACAGCAACCGACCTCCGGAGTAGTTCGTCGTGT
GGTACGCACCGTCACTACCGAGGAGGTCATTGAACACATTGTGGAACCGT
CTTCCTCAACACCGTCGAGGAAGACAGCCAAACCGAAAACCCCCATTAAG
AAGAAAACAGCAAAGGCGTCTTCTTCTGCAAGCTCCTCACGCTCGACCAC
CAAGCCAAAGGCCAAGCCGTCAGTGAAGAAGGCGGAGCCGAAGACCATTG
CTGGGAAGAAGGCAGAGCCGAAGACCATTGCTGTGAAGAAAACAAAGCCG
AAGACCACTACTGTGAAGAAAGCAGAGCCGAAGACCACTACTGTGAAGAA
AGCAGTACCGAAGACCACTACTGTGAAGAAAACAGAGCCGAAGACCACTA
CTGTGAAGAAAGCAGAGCCGAAGACCACTACTGTGAAGAAGGCACCCGCA
AGTGCTAGTAAGACGAAGCAGACAGCTAAAAGTAGACCCAAATCGAACAG
CGCCACCTCCGCTACTAAAGCTAAAGCTCCAACGGTGAAAAGGACGGGGA
CTAAGACTGTCATATCCAGCACACAGAAAAAGACTGCAGCCAAGGGTACA
TCCTCAAAGGCTGCCACTGGCATAAAAGAAACCAAGGCCTCAGCTACCAA
GGCGAAGCCCAATATCGCAAAGGCAACTGGAGTGAAGAAAGAAAAGAAGT
CTCTTTCTGTACAACCTTCCATCAAGAAGAAGACTGTATCCAAACCTGCG
CGGAAAAATGTGAAGAAGAGCACTGCGGCGAAATCCGAGCCGACTGCCGC
TCAGCTGAATGAGGCGCAAAAACTTCATGCCGAAATGCGTGCTAAGATGT
TCAATGAAGCTCTGCAGGTAGCACGAATGGAAGCGCGTGCTGAGTTTCAA
CGTTTGGCAAGTAAGGGACAGGATGTTACCAACAGCGCGGTGAAAACGCC
CAAGGCCGAGCCGCTTTCTTTCGTAAGCAGAGGAGCTCCAGGACCCTCTT
CGTTTGGTTTAGAACAACGCAGTGGTGCAAATCCACTCTTTGTCACACCC
GGTGTTCGTGCCCGTCGAGTTAAGCAAACTGCTCGAAGGACAGTGAGTAC
CCCAATTCCTTCATCGTCGAGATCTGCTGCACAATCTGTAGCACGCTCGA
ATCACGGGACTAGAGCGGTTAACCAAGATGAGGTTTGGATTCTCTCACAC
GAAACGGGTTACGTCCCAGACGGCTTCCATTCCGCAGAATTGCCAGAACG
TAAAGAAGTTGGCACATTTACCAGCAGGGCTGACGCAGTGAAGGAGGGTA
AGCGTCTTGTTGGAAACGATGTTGGATACTCATGGGCGGAAGTGTGTGAA
GCAGGTGACTTGGAAGTAGAAGAAGACTCGTCCAAGAAGTGGGAAATTTG
TTGGAGTCCACCAGACTCTCAGTTTTCGCGTGTTGTGGCACTATGCGTCA
AACTCAGTGAGGGGACATGGCTAGTTGAGACTGAAAGTGGCTATTATCCG
GACAGGTTTCACTCCTACATGGCTCCAACCAAAAAGACTCTGGGGCCGTA
TAAAACACGCCAGATGGCAGTGAATATGGGTAAGAATCAGGTTGGTAGCG
TATACGGCATAGACTGGGATGAAGTCGCATCTGGGGGTGATCTAGAAATC
GTTGTCGATAATGCTACACGTTGGGAGGTTTGTTGGAGTCCACCAGACTC
TGAATATTCTCGAGTCGTTGTCAAGCTCGTCACGGCAGCACCCGCTCAAA
GCGGCGGAAATAGTATGCCAGCAAGGGGGGAAGAGAGTGACAATGATGAC
TACGAAGGATTCCCTGTTATGTTTTAG

protein sequence of Ggra6295.t1

>Ggra6295.t1 ID=Ggra6295.t1|Name=Ggra6295.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=609bp
MAPRKPQQPTSGVVRRVVRTVTTEEVIEHIVEPSSSTPSRKTAKPKTPIK
KKTAKASSSASSSRSTTKPKAKPSVKKAEPKTIAGKKAEPKTIAVKKTKP
KTTTVKKAEPKTTTVKKAVPKTTTVKKTEPKTTTVKKAEPKTTTVKKAPA
SASKTKQTAKSRPKSNSATSATKAKAPTVKRTGTKTVISSTQKKTAAKGT
SSKAATGIKETKASATKAKPNIAKATGVKKEKKSLSVQPSIKKKTVSKPA
RKNVKKSTAAKSEPTAAQLNEAQKLHAEMRAKMFNEALQVARMEARAEFQ
RLASKGQDVTNSAVKTPKAEPLSFVSRGAPGPSSFGLEQRSGANPLFVTP
GVRARRVKQTARRTVSTPIPSSSRSAAQSVARSNHGTRAVNQDEVWILSH
ETGYVPDGFHSAELPERKEVGTFTSRADAVKEGKRLVGNDVGYSWAEVCE
AGDLEVEEDSSKKWEICWSPPDSQFSRVVALCVKLSEGTWLVETESGYYP
DRFHSYMAPTKKTLGPYKTRQMAVNMGKNQVGSVYGIDWDEVASGGDLEI
VVDNATRWEVCWSPPDSEYSRVVVKLVTAAPAQSGGNSMPARGEESDNDD
YEGFPVMF*

mRNA from alignment at tig00000879_pilon:470012..471838+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6295.t1 ID=Ggra6295.t1|Name=Ggra6295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1827bp|location=Sequence derived from alignment at tig00000879_pilon:470012..471838+ (Gracilaria gracilis GNS1m male)
ATGGCACCACGAAAGCCACAGCAACCGACCTCCGGAGTAGTTCGTCGTGT
GGTACGCACCGTCACTACCGAGGAGGTCATTGAACACATTGTGGAACCGT
CTTCCTCAACACCGTCGAGGAAGACAGCCAAACCGAAAACCCCCATTAAG
AAGAAAACAGCAAAGGCGTCTTCTTCTGCAAGCTCCTCACGCTCGACCAC
CAAGCCAAAGGCCAAGCCGTCAGTGAAGAAGGCGGAGCCGAAGACCATTG
CTGGGAAGAAGGCAGAGCCGAAGACCATTGCTGTGAAGAAAACAAAGCCG
AAGACCACTACTGTGAAGAAAGCAGAGCCGAAGACCACTACTGTGAAGAA
AGCAGTACCGAAGACCACTACTGTGAAGAAAACAGAGCCGAAGACCACTA
CTGTGAAGAAAGCAGAGCCGAAGACCACTACTGTGAAGAAGGCACCCGCA
AGTGCTAGTAAGACGAAGCAGACAGCTAAAAGTAGACCCAAATCGAACAG
CGCCACCTCCGCTACTAAAGCTAAAGCTCCAACGGTGAAAAGGACGGGGA
CTAAGACTGTCATATCCAGCACACAGAAAAAGACTGCAGCCAAGGGTACA
TCCTCAAAGGCTGCCACTGGCATAAAAGAAACCAAGGCCTCAGCTACCAA
GGCGAAGCCCAATATCGCAAAGGCAACTGGAGTGAAGAAAGAAAAGAAGT
CTCTTTCTGTACAACCTTCCATCAAGAAGAAGACTGTATCCAAACCTGCG
CGGAAAAATGTGAAGAAGAGCACTGCGGCGAAATCCGAGCCGACTGCCGC
TCAGCTGAATGAGGCGCAAAAACTTCATGCCGAAATGCGTGCTAAGATGT
TCAATGAAGCTCTGCAGGTAGCACGAATGGAAGCGCGTGCTGAGTTTCAA
CGTTTGGCAAGTAAGGGACAGGATGTTACCAACAGCGCGGTGAAAACGCC
CAAGGCCGAGCCGCTTTCTTTCGTAAGCAGAGGAGCTCCAGGACCCTCTT
CGTTTGGTTTAGAACAACGCAGTGGTGCAAATCCACTCTTTGTCACACCC
GGTGTTCGTGCCCGTCGAGTTAAGCAAACTGCTCGAAGGACAGTGAGTAC
CCCAATTCCTTCATCGTCGAGATCTGCTGCACAATCTGTAGCACGCTCGA
ATCACGGGACTAGAGCGGTTAACCAAGATGAGGTTTGGATTCTCTCACAC
GAAACGGGTTACGTCCCAGACGGCTTCCATTCCGCAGAATTGCCAGAACG
TAAAGAAGTTGGCACATTTACCAGCAGGGCTGACGCAGTGAAGGAGGGTA
AGCGTCTTGTTGGAAACGATGTTGGATACTCATGGGCGGAAGTGTGTGAA
GCAGGTGACTTGGAAGTAGAAGAAGACTCGTCCAAGAAGTGGGAAATTTG
TTGGAGTCCACCAGACTCTCAGTTTTCGCGTGTTGTGGCACTATGCGTCA
AACTCAGTGAGGGGACATGGCTAGTTGAGACTGAAAGTGGCTATTATCCG
GACAGGTTTCACTCCTACATGGCTCCAACCAAAAAGACTCTGGGGCCGTA
TAAAACACGCCAGATGGCAGTGAATATGGGTAAGAATCAGGTTGGTAGCG
TATACGGCATAGACTGGGATGAAGTCGCATCTGGGGGTGATCTAGAAATC
GTTGTCGATAATGCTACACGTTGGGAGGTTTGTTGGAGTCCACCAGACTC
TGAATATTCTCGAGTCGTTGTCAAGCTCGTCACGGCAGCACCCGCTCAAA
GCGGCGGAAATAGTATGCCAGCAAGGGGGGAAGAGAGTGACAATGATGAC
TACGAAGGATTCCCTGTTATGTTTTAG

Coding sequence (CDS) from alignment at tig00000879_pilon:470012..471838+

>Ggra6295.t1 ID=Ggra6295.t1|Name=Ggra6295.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1827bp|location=Sequence derived from alignment at tig00000879_pilon:470012..471838+ (Gracilaria gracilis GNS1m male)
ATGGCACCACGAAAGCCACAGCAACCGACCTCCGGAGTAGTTCGTCGTGT
GGTACGCACCGTCACTACCGAGGAGGTCATTGAACACATTGTGGAACCGT
CTTCCTCAACACCGTCGAGGAAGACAGCCAAACCGAAAACCCCCATTAAG
AAGAAAACAGCAAAGGCGTCTTCTTCTGCAAGCTCCTCACGCTCGACCAC
CAAGCCAAAGGCCAAGCCGTCAGTGAAGAAGGCGGAGCCGAAGACCATTG
CTGGGAAGAAGGCAGAGCCGAAGACCATTGCTGTGAAGAAAACAAAGCCG
AAGACCACTACTGTGAAGAAAGCAGAGCCGAAGACCACTACTGTGAAGAA
AGCAGTACCGAAGACCACTACTGTGAAGAAAACAGAGCCGAAGACCACTA
CTGTGAAGAAAGCAGAGCCGAAGACCACTACTGTGAAGAAGGCACCCGCA
AGTGCTAGTAAGACGAAGCAGACAGCTAAAAGTAGACCCAAATCGAACAG
CGCCACCTCCGCTACTAAAGCTAAAGCTCCAACGGTGAAAAGGACGGGGA
CTAAGACTGTCATATCCAGCACACAGAAAAAGACTGCAGCCAAGGGTACA
TCCTCAAAGGCTGCCACTGGCATAAAAGAAACCAAGGCCTCAGCTACCAA
GGCGAAGCCCAATATCGCAAAGGCAACTGGAGTGAAGAAAGAAAAGAAGT
CTCTTTCTGTACAACCTTCCATCAAGAAGAAGACTGTATCCAAACCTGCG
CGGAAAAATGTGAAGAAGAGCACTGCGGCGAAATCCGAGCCGACTGCCGC
TCAGCTGAATGAGGCGCAAAAACTTCATGCCGAAATGCGTGCTAAGATGT
TCAATGAAGCTCTGCAGGTAGCACGAATGGAAGCGCGTGCTGAGTTTCAA
CGTTTGGCAAGTAAGGGACAGGATGTTACCAACAGCGCGGTGAAAACGCC
CAAGGCCGAGCCGCTTTCTTTCGTAAGCAGAGGAGCTCCAGGACCCTCTT
CGTTTGGTTTAGAACAACGCAGTGGTGCAAATCCACTCTTTGTCACACCC
GGTGTTCGTGCCCGTCGAGTTAAGCAAACTGCTCGAAGGACAGTGAGTAC
CCCAATTCCTTCATCGTCGAGATCTGCTGCACAATCTGTAGCACGCTCGA
ATCACGGGACTAGAGCGGTTAACCAAGATGAGGTTTGGATTCTCTCACAC
GAAACGGGTTACGTCCCAGACGGCTTCCATTCCGCAGAATTGCCAGAACG
TAAAGAAGTTGGCACATTTACCAGCAGGGCTGACGCAGTGAAGGAGGGTA
AGCGTCTTGTTGGAAACGATGTTGGATACTCATGGGCGGAAGTGTGTGAA
GCAGGTGACTTGGAAGTAGAAGAAGACTCGTCCAAGAAGTGGGAAATTTG
TTGGAGTCCACCAGACTCTCAGTTTTCGCGTGTTGTGGCACTATGCGTCA
AACTCAGTGAGGGGACATGGCTAGTTGAGACTGAAAGTGGCTATTATCCG
GACAGGTTTCACTCCTACATGGCTCCAACCAAAAAGACTCTGGGGCCGTA
TAAAACACGCCAGATGGCAGTGAATATGGGTAAGAATCAGGTTGGTAGCG
TATACGGCATAGACTGGGATGAAGTCGCATCTGGGGGTGATCTAGAAATC
GTTGTCGATAATGCTACACGTTGGGAGGTTTGTTGGAGTCCACCAGACTC
TGAATATTCTCGAGTCGTTGTCAAGCTCGTCACGGCAGCACCCGCTCAAA
GCGGCGGAAATAGTATGCCAGCAAGGGGGGAAGAGAGTGACAATGATGAC
TACGAAGGATTCCCTGTTATGTTTTAG