Ggra6264.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6264.t1
Unique NameGgra6264.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:362636..363076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR083CT
Preferred nameNDUFA12
PFAMsNDUFA12
Max annot lvl2759|Eukaryota
KEGG koko:K10742,ko:K11352,ko:K14012,ko:K18160
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko03030,ko04141,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map03030,map04141,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005829,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007585,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042221,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0050136,GO:0050896,GO:0050897,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue2.87e-18
EggNOG OGsKOG3382@1|root,KOG3382@2759|Eukaryota
EC3.6.4.12
DescriptionNADH dehydrogenase (quinone) activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6264Ggra6264Gracilaria gracilis GNS1m malegenetig00000879_pilon 362636..363076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6264.t1Ggra6264.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 362636..363076 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6264.t1.start1Ggra6264.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 362636..362638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6264.t1.CDS1Ggra6264.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 362636..362648 +
Ggra6264.t1.CDS2Ggra6264.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 362712..363076 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6264.t1.exon1Ggra6264.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 362636..362648 +
Ggra6264.t1.exon2Ggra6264.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 362712..363076 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6264.t1.intron1Ggra6264.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 362649..362711 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6264.t1.stop1Ggra6264.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 363074..363076 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6264.t1 ID=Ggra6264.t1|Name=Ggra6264.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=126bp
MHCFVGEDKLKNRFFENKNETYGRDRWVEYVDDRNPDSLKITPEWHAWLH
HNIDEPPTEKPLPKPIYQAEETGNPTGTRDAYVPAHHRLAKNSVGGASEK
YESWKPGAESAPSKVGSGKDVYDLK*
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spliced messenger RNA

>Ggra6264.t1 ID=Ggra6264.t1|Name=Ggra6264.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp|location=Sequence derived from alignment at tig00000879_pilon:362636..363076+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTGCTTTGTCGGGGAGGATAAGCTCAAGAATCGCTTTTTTGAGAA
CAAGAACGAGACCTACGGTCGCGATCGATGGGTAGAGTATGTCGACGATC
GCAATCCGGATAGCTTGAAGATTACACCCGAATGGCATGCATGGTTACAT
CATAATATTGATGAACCTCCAACAGAAAAGCCATTGCCAAAGCCCATTTA
CCAAGCGGAAGAGACCGGCAACCCAACCGGAACGCGCGATGCTTATGTAC
CAGCACATCACAGACTAGCGAAGAATTCTGTCGGAGGAGCTTCCGAGAAG
TATGAGTCTTGGAAACCGGGAGCTGAGTCAGCTCCATCGAAAGTAGGAAG
CGGAAAGGATGTATATGATCTCAAGTAG
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protein sequence of Ggra6264.t1

>Ggra6264.t1 ID=Ggra6264.t1|Name=Ggra6264.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=126bp
MHCFVGEDKLKNRFFENKNETYGRDRWVEYVDDRNPDSLKITPEWHAWLH
HNIDEPPTEKPLPKPIYQAEETGNPTGTRDAYVPAHHRLAKNSVGGASEK
YESWKPGAESAPSKVGSGKDVYDLK*
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mRNA from alignment at tig00000879_pilon:362636..363076+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6264.t1 ID=Ggra6264.t1|Name=Ggra6264.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000879_pilon:362636..363076+ (Gracilaria gracilis GNS1m male)
ATGCATTGCTTTGGTACGTTTATGGCAAGACCAACAACTTTGACAATATT
GCAAGCGCGCTAACCATATGATGTAGTCGGGGAGGATAAGCTCAAGAATC
GCTTTTTTGAGAACAAGAACGAGACCTACGGTCGCGATCGATGGGTAGAG
TATGTCGACGATCGCAATCCGGATAGCTTGAAGATTACACCCGAATGGCA
TGCATGGTTACATCATAATATTGATGAACCTCCAACAGAAAAGCCATTGC
CAAAGCCCATTTACCAAGCGGAAGAGACCGGCAACCCAACCGGAACGCGC
GATGCTTATGTACCAGCACATCACAGACTAGCGAAGAATTCTGTCGGAGG
AGCTTCCGAGAAGTATGAGTCTTGGAAACCGGGAGCTGAGTCAGCTCCAT
CGAAAGTAGGAAGCGGAAAGGATGTATATGATCTCAAGTAG
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Coding sequence (CDS) from alignment at tig00000879_pilon:362636..363076+

>Ggra6264.t1 ID=Ggra6264.t1|Name=Ggra6264.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=378bp|location=Sequence derived from alignment at tig00000879_pilon:362636..363076+ (Gracilaria gracilis GNS1m male)
ATGCATTGCTTTGTCGGGGAGGATAAGCTCAAGAATCGCTTTTTTGAGAA
CAAGAACGAGACCTACGGTCGCGATCGATGGGTAGAGTATGTCGACGATC
GCAATCCGGATAGCTTGAAGATTACACCCGAATGGCATGCATGGTTACAT
CATAATATTGATGAACCTCCAACAGAAAAGCCATTGCCAAAGCCCATTTA
CCAAGCGGAAGAGACCGGCAACCCAACCGGAACGCGCGATGCTTATGTAC
CAGCACATCACAGACTAGCGAAGAATTCTGTCGGAGGAGCTTCCGAGAAG
TATGAGTCTTGGAAACCGGGAGCTGAGTCAGCTCCATCGAAAGTAGGAAG
CGGAAAGGATGTATATGATCTCAAGTAG
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