Ggra626.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra626.t1
Unique NameGgra626.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length74
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000895_piloncontigtig00000895_pilon:136550..136982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog90675.XP_010431989.1
PFAMsSPC12
Max annot lvl35493|Streptophyta
KEGG koko:K12946
KEGG Pathwayko03060,map03060
Evalue1.22e-10
EggNOG OGsKOG4112@1|root,KOG4112@2759|Eukaryota,37VYY@33090|Viridiplantae,3GK39@35493|Streptophyta,3HUQP@3699|Brassicales
Descriptionsignal peptidase
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra626Ggra626Gracilaria gracilis GNS1m malegenetig00000895_pilon 136550..136982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra626.t1Ggra626.t1Gracilaria gracilis GNS1m malepolypeptidetig00000895_pilon 136550..136982 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra626.t1.start1Ggra626.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000895_pilon 136550..136552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra626.t1.CDS1Ggra626.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000895_pilon 136550..136699 +
Ggra626.t1.CDS2Ggra626.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000895_pilon 136911..136982 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra626.t1.exon1Ggra626.t1.exon1Gracilaria gracilis GNS1m maleexontig00000895_pilon 136550..136699 +
Ggra626.t1.exon2Ggra626.t1.exon2Gracilaria gracilis GNS1m maleexontig00000895_pilon 136911..136982 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra626.t1.intron1Ggra626.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000895_pilon 136700..136910 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra626.t1.stop1Ggra626.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000895_pilon 136980..136982 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra626.t1 ID=Ggra626.t1|Name=Ggra626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=74bp
MDLRGQFASERLFVALMWALTLLAALLTFAADDVRVMFGAFGGGLLLVSA
ICVPEWPCFNRHPLRFAAASAPP*
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spliced messenger RNA

>Ggra626.t1 ID=Ggra626.t1|Name=Ggra626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp|location=Sequence derived from alignment at tig00000895_pilon:136550..136982+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTGCGCGGGCAGTTTGCGAGCGAGCGGCTGTTCGTGGCGCTCAT
GTGGGCGCTCACGTTGCTGGCTGCGCTGCTGACGTTTGCGGCGGACGACG
TGCGCGTGATGTTTGGCGCGTTTGGCGGCGGGCTGCTGCTCGTGTCGGCG
ATCTGCGTGCCGGAGTGGCCGTGCTTCAAccgccacccgctgcgcttcgc
cgccgcctccgcgccgccgTGA
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protein sequence of Ggra626.t1

>Ggra626.t1 ID=Ggra626.t1|Name=Ggra626.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=74bp
MDLRGQFASERLFVALMWALTLLAALLTFAADDVRVMFGAFGGGLLLVSA
ICVPEWPCFNRHPLRFAAASAPP*
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mRNA from alignment at tig00000895_pilon:136550..136982+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra626.t1 ID=Ggra626.t1|Name=Ggra626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=433bp|location=Sequence derived from alignment at tig00000895_pilon:136550..136982+ (Gracilaria gracilis GNS1m male)
ATGGACCTGCGCGGGCAGTTTGCGAGCGAGCGGCTGTTCGTGGCGCTCAT
GTGGGCGCTCACGTTGCTGGCTGCGCTGCTGACGTTTGCGGCGGACGACG
TGCGCGTGATGTTTGGCGCGTTTGGCGGCGGGCTGCTGCTCGTGTCGGCG
GTACGTATGCACGCCAGTCTCTTTCCGGCGCTGCGGCGCGCGCGCTCCGC
CCTCTCTTCGTCGCTGCCGCTGTGTCTGACTATGCCGCCTTTTTtgtgtg
tgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtCTACTGCGTGCTG
TGCGTGCGTGCTCtcgccgttgtcgccgtcgtcgtcgtcgccgccgtcgt
cgccCGCGTAGATCTGCGTGCCGGAGTGGCCGTGCTTCAAccgccacccg
ctgcgcttcgccgccgcctccgcgccgccgTGA
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Coding sequence (CDS) from alignment at tig00000895_pilon:136550..136982+

>Ggra626.t1 ID=Ggra626.t1|Name=Ggra626.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=222bp|location=Sequence derived from alignment at tig00000895_pilon:136550..136982+ (Gracilaria gracilis GNS1m male)
ATGGACCTGCGCGGGCAGTTTGCGAGCGAGCGGCTGTTCGTGGCGCTCAT
GTGGGCGCTCACGTTGCTGGCTGCGCTGCTGACGTTTGCGGCGGACGACG
TGCGCGTGATGTTTGGCGCGTTTGGCGGCGGGCTGCTGCTCGTGTCGGCG
ATCTGCGTGCCGGAGTGGCCGTGCTTCAAccgccacccgctgcgcttcgc
cgccgcctccgcgccgccgTGA
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